>PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transporting protein)|
          Length = 585

 Score =  172 bits (437), Expect = 4e-43
 Identities = 78/174 (44%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
 Frame = +1

Query: 4   NFFSSFYICVIFGVITSGTIVVWVQENVSWAIGYGIATTCIALALVGFVAGTPIFRLREP 183
           +FF+ FY  +  G + S +++VW+QEN  W +G+GI T  + LA+  F  GTP++R ++P
Sbjct: 199 SFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKP 258

Query: 184 SGSPMKSVFQVTFAAFKNMSLEIPADSSLLYEARSKNTHKRVPR-LAHTNDFRFFDKAAV 360
            GSP+  + QV  A+F+  S+++P D++LLYE + KN+     R + HT+D ++ DKAAV
Sbjct: 259 GGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAV 318

Query: 361 ISDLPLDNSSCQSSWRICTVTQVEELKILIRLLPIWATGVLFAAAISXMHTTFI 522
           IS+    +    +SWR+CTVTQVEELKILIR+ PIWA+G++F+A  + M T F+
Sbjct: 319 ISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFV 372

>CHL1_ARATH (Q05085) Nitrate/chlorate transporter|
          Length = 590

 Score =  124 bits (312), Expect = 1e-28
 Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQENVSWAIGYGIATTCIALALVGFVAGTPIFRLREPS 186
           FF+ F+ C+  G + + T++V+VQ++V    GYGI    I LAL  F+AGT  +R ++  
Sbjct: 189 FFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLI 248

Query: 187 GSPMKSVFQVTFAAFKNMSLEIPADSSLLYEA----RSKNTHKRVPRLAHTNDFRFFDKA 354
           GSPM  V  V  AA++N  LE+PAD S LY+      ++ + K   +L HT  FR  DKA
Sbjct: 249 GSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKA 308

Query: 355 AVISDLPLDNSSCQSSWRICTVTQVEELKILIRLLPIWATGVLF 486
           A+        S+  + W + T+T VEE+K ++R+LPIWAT +LF
Sbjct: 309 AIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILF 352

>S15A2_HUMAN (Q16348) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQENVS------WAIGYGIATTCIALALVGFVAGTPIF 168
           +FS FY+ +  G + S  I   ++ +V       +A+ +G+    + +ALV F  G+ I+
Sbjct: 183 YFSVFYLSINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMGSKIY 242

Query: 169 RLREPSGSPMKSVFQVTFAA----FKNMSLEIP 255
               P G+ +  VF+  + A    FKN S +IP
Sbjct: 243 NKPPPEGNIVAQVFKCIWFAISNRFKNRSGDIP 275

>S15A2_RABIT (P46029) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQENVS------WAIGYGIATTCIALALVGFVAGTPIF 168
           +FS FY+ +  G + S  I   ++ +V       +A+ +G+    + +ALV F  G+ ++
Sbjct: 183 YFSGFYLAINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMGSKMY 242

Query: 169 RLREPSGSPMKSVFQVTFAA----FKNMSLEIP 255
           +   P G+ +  V +  + A    FKN S +IP
Sbjct: 243 KKPPPEGNIVAQVVKCIWFAISNRFKNRSEDIP 275

>S15A1_RABIT (P36836) Oligopeptide transporter, small intestine isoform (Peptide|
           transporter 1) (Intestinal H(+)/peptide cotransporter)
           (Solute carrier family 15 member 1)
          Length = 707

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQ--------ENVSWAIGYGIATTCIALALVGFVAGTP 162
           FFS FY+ +  G + S  I   V+        +   + + +GI    +A++L+ F+ G+ 
Sbjct: 162 FFSIFYLAINAGSLLSTIITPMVRVQQCGIHVKQACYPLAFGIPAILMAVSLIVFIIGSG 221

Query: 163 IFRLREPSGSPMKSVFQVTFAAFKNMSLEIPADSSLLYEARSKNTHKRVPRLAHTNDF 336
           +++  +P G+ +  V +    A KN               R ++  K+ P+ AH  D+
Sbjct: 222 MYKKFKPQGNILSKVVKCICFAIKN---------------RFRHRSKQFPKRAHWLDW 264

>S15A2_MOUSE (Q9ES07) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQENVS------WAIGYGIATTCIALALVGFVAGTPIF 168
           +FS FY+ +  G + S  I   ++ +V       +A+ +GI    + LALV F  G+ ++
Sbjct: 183 YFSVFYLSINAGSLISTFITPMLRGDVKCFGEDCYALAFGIPGLLMVLALVVFAMGSKMY 242

Query: 169 RLREPSGSPMKSVFQVTFAA----FKNMSLEIP 255
           R   P G+ +  V +  + A    F+N S +IP
Sbjct: 243 RKPPPEGNIVAQVTKCIWFAICNRFRNRSEDIP 275

>S15A2_RAT (Q63424) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQENVS------WAIGYGIATTCIALALVGFVAGTPIF 168
           +FS FY+ +  G + S  I   ++ +V       +A+ +G+    + LALV F  G+ ++
Sbjct: 183 YFSVFYLAINAGSLISTFITPMLRGDVKCFGQDCYALAFGVPGLLMVLALVVFAMGSKMY 242

Query: 169 RLREPSGSPMKSVFQVTFAA----FKNMSLEIP 255
           R   P G+ +  V +  + A    F+N S ++P
Sbjct: 243 RKPPPEGNIVAQVIKCIWFALCNRFRNRSGDLP 275

>S15A1_RAT (P51574) Oligopeptide transporter, small intestine isoform (Peptide|
           transporter 1) (Intestinal H(+)/peptide cotransporter)
           (Solute carrier family 15 member 1) (Proton-coupled
           dipeptide cotransporter)
          Length = 710

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTI--VVWVQE------NVSWAIGYGIATTCIALALVGFVAGTP 162
           FFS FY+ +  G + S  I  ++ VQ+         + + +G+    +A+AL+ FV G+ 
Sbjct: 162 FFSIFYLAINAGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSG 221

Query: 163 IFRLREPSGSPMKSVFQVTFAAFKN 237
           +++  +P G+ M  V +    A KN
Sbjct: 222 MYKKFQPQGNIMGKVAKCIRFAIKN 246

>S15A1_MOUSE (Q9JIP7) Oligopeptide transporter, small intestine isoform (Peptide|
           transporter 1) (Intestinal H(+)/peptide cotransporter)
           (Solute carrier family 15 member 1) (Proton-coupled
           dipeptide cotransporter)
          Length = 709

 Score = 37.7 bits (86), Expect = 0.019
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTI--VVWVQE------NVSWAIGYGIATTCIALALVGFVAGTP 162
           FFS FY+ +  G + S  I  ++ VQ+         + + +G+    +A+AL+ FV G+ 
Sbjct: 162 FFSIFYLAINGGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSG 221

Query: 163 IFRLREPSGSPMKSVFQVTFAAFKN 237
           +++  +P G+ M  V +    A KN
Sbjct: 222 MYKKFQPQGNIMGKVAKCIGFAIKN 246

>S15A1_HUMAN (P46059) Oligopeptide transporter, small intestine isoform (Peptide|
           transporter 1) (Intestinal H(+)/peptide cotransporter)
           (Solute carrier family 15 member 1)
          Length = 708

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQ--------ENVSWAIGYGIATTCIALALVGFVAGTP 162
           FFS FY+ +  G + S  I   ++        +   + + +G+    +A+AL+ FV G+ 
Sbjct: 162 FFSIFYLAINAGSLLSTIITPMLRVQQCGIHSKQACYPLAFGVPAALMAVALIVFVLGSG 221

Query: 163 IFRLREPSGSPMKSVFQVTFAAFKN 237
           +++  +P G+ M  V +    A KN
Sbjct: 222 MYKKFKPQGNIMGKVAKCIGFAIKN 246

>S15A1_CANFA (Q8WMX5) Oligopeptide transporter, small intestine isoform (Peptide|
           transporter 1) (Intestinal H(+)/peptide cotransporter)
           (Solute carrier family 15 member 1)
          Length = 708

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQ--------ENVSWAIGYGIATTCIALALVGFVAGTP 162
           FFS FY+ +  G + S  +   ++        +   + + +G+    +A++L+ FV G+ 
Sbjct: 162 FFSIFYLAINAGSLISTIVTPMLRVHECGIYSQKACYPLAFGVPAALMAVSLIVFVIGSG 221

Query: 163 IFRLREPSGSPMKSVFQVTFAAFKN 237
           +++  +P G+ M  V +    A KN
Sbjct: 222 MYKKFQPQGNVMGKVVKCIGFALKN 246

>OPT1_DROME (P91679) Oligopeptide transporter 1 (Protein YIN)|
          Length = 743

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQENVS-------WAIGYGIATTCIALALVGFVAGTPI 165
           FFS FY  +  G + S T    ++ +V        +++ +G+    +  +++ F+AG  +
Sbjct: 172 FFSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSLAFGVPAILMIFSVIIFMAGKRL 231

Query: 166 FRLREPSGSPMKSVFQVTFAAFK 234
           +R + P+G+ +  V +    AFK
Sbjct: 232 YRCQPPAGNMIFGVSRCIADAFK 254

>YBGH_ECOLI (P75742) Inner membrane transporter ybgH|
          Length = 493

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 10  FSSFYICVIFGVITSGTIVVWVQENVSWAIGYGIATTCIALALVGFVAGTPIF 168
           FS  Y     G I +     + QE  SWA+G+G+A   +   LV F+ G   F
Sbjct: 140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF 192

>SECY_BUCAI (P57571) Preprotein translocase secY subunit|
          Length = 437

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 19  FYICVIFGVITSGTIVVWVQENVSWAIGYGIATTCIALALVGFVAGTP 162
           FY+  I  ++TS   ++W+ E ++    YGI      +  +G +AG P
Sbjct: 156 FYLIAIISLVTSTMFLMWLGELIT---EYGIGNGISIIIFIGIIAGLP 200

>GPR4_PIG (P50132) Probable G-protein coupled receptor 4 (G-protein coupled|
           receptor 19)
          Length = 362

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 18  VLYLCHL--WRDYFWHHSSL--GSGKCELGYRIWY 110
           +LY+C L  W DYF HH +   G G C+L   I+Y
Sbjct: 64  LLYICTLPLWVDYFLHHDNWIHGPGSCKLFGFIFY 98

>GPR4_HUMAN (P46093) Probable G-protein coupled receptor 4 (G-protein coupled|
           receptor 19)
          Length = 362

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 18  VLYLCHL--WRDYFWHHSSL--GSGKCELGYRIWY 110
           +LY+C L  W DYF HH +   G G C+L   I+Y
Sbjct: 64  LLYICTLPLWVDYFLHHDNWIHGPGSCKLFGFIFY 98

>VGLB_HHV7J (P52352) Glycoprotein B precursor|
          Length = 822

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
 Frame = +1

Query: 106 GIATTCIALALVGFV----------AGTPIFRLREPSGSPMKSVFQVTFAAFKNMSLEIP 255
           G  T  + L ++G V          A TPI  L   +     SV Q T +      ++ P
Sbjct: 686 GALTILLTLGVIGLVIFLFLRHKRLAQTPIDILFPYTSKSTNSVLQATQSV--QAQVKEP 743

Query: 256 ADSSLLYEARSKNTHKRVPRLAHTNDFRFFDKAAVISDLPLDNSS 390
            DSS  Y   +K+T  +   + HTN++   +   ++  + L + S
Sbjct: 744 LDSSPPYLKTNKDTEPQGDDITHTNEYSQVEALKMLKAIKLLDES 788

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 197 IGEPLGSRSRNIGVPATKPTKARAMHVVAIPYPIAQLTFS*TQTTMVPEV 48
           +G+P   RSR+ G   + P +A A    ++P P        TQ T  PEV
Sbjct: 254 LGKPEQERSRSPGATQSGPRQAEAARATSVPGP--------TQATAPPEV 295

>RPOA_ARATH (P56762) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 312 RHSLVCVLAPGLIKKRAVGRDF*AHVLKSGKSNLENTLHWGTARLTQPEYWCSSHKAYQS 133
           R++L+CV  PG I  R +       +L      ++NT H   A LT+P   C   K  ++
Sbjct: 104 RNALICVQGPGYITARDI-------ILPPAVEIIDNTQH--IATLTEPIDLCIELKIERN 154

Query: 132 QSYA 121
           + Y+
Sbjct: 155 RGYS 158

>LPRH_MYCTU (P65316) Putative lipoprotein lprH precursor|
          Length = 228

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 37  FGVITSGTIVVWVQENVSWAIGYGIAT---TCIALALVGFVAGTPI 165
           F  ++ G ++VW   N  W   YG+A      + L+  GF  G P+
Sbjct: 169 FATLSDG-VLVWTMSNPRWTCDYGLAVVPHAVLVLSACGFKPGFPM 213

>LPRH_MYCBO (P65317) Putative lipoprotein lprH precursor|
          Length = 228

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 37  FGVITSGTIVVWVQENVSWAIGYGIAT---TCIALALVGFVAGTPI 165
           F  ++ G ++VW   N  W   YG+A      + L+  GF  G P+
Sbjct: 169 FATLSDG-VLVWTMSNPRWTCDYGLAVVPHAVLVLSACGFKPGFPM 213

>STP4_ARATH (Q39228) Sugar transport protein 4 (Hexose transporter 4)|
          Length = 514

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 7   FFSSFYICVIFGVITSGTIVVWVQE---NVSWAIGYGIATTCIALALVG 144
           F + F + +IFG++ +  I  +  +   N+ W I  G+A     + ++G
Sbjct: 169 FNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIG 217

>PIC_ECOL6 (Q8CWC7) Serine protease pic precursor (EC 3.4.21.-)|
          Length = 1371

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 192 GTARLTQPEYWCS--SHKAYQSQSYARGSNTISYSPAHIFLNPDYYGARSN 46
           G A L  P+Y  S   +  YQS S+  G NT S    +   + D++  R N
Sbjct: 112 GVATLVSPQYIVSVKHNGGYQSVSFGNGKNTYSLVDRNNHSSVDFHAPRLN 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,372,183
Number of Sequences: 219361
Number of extensions: 1470293
Number of successful extensions: 4202
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4199
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)