Clone Information

BLAST Search Result

Clone Name	bags7k12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_481801.1\| Oryza sativa (japonica cultivar-group), mRNA	434	e-118
2	dbj\|AK065348.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	426	e-116
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	163	8e-37
4	dbj\|AP004459.2\| Oryza sativa (japonica cultivar-group) genomic D...	163	8e-37
5	emb\|CT030180.3\| M.truncatula DNA sequence from clone MTH2-177C12...	60	9e-06
6	ref\|XM_807795.1\| Trypanosoma cruzi strain CL Brener hypothetical...	44	0.54
7	ref\|XM_811029.1\| Trypanosoma cruzi strain CL Brener hypothetical...	44	0.54
8	gb\|CP000153.1\| Thiomicrospira denitrificans ATCC 33889, complete...	42	2.1
9	gb\|AC094571.8\| Rattus norvegicus 20 BAC CH230-4L21 (Children's H...	42	2.1
10	emb\|AL603707.5\| Mouse DNA sequence from clone RP23-422L16 on chr...	42	2.1
11	gb\|AC008706.5\| Homo sapiens chromosome 5 clone CTB-77M23, comple...	42	2.1
12	gb\|AC005722.1\|AC005722 Homo sapiens chromosome 17, clone hRPK.3...	42	2.1
13	gb\|CP000027.1\| Dehalococcoides ethenogenes 195, complete genome	40	8.4
14	gb\|CP000013.1\| Borrelia garinii PBi, complete genome	40	8.4
15	gb\|AY280611.1\| Anopheles gambiae chloride/bicarbonate anion exch...	40	8.4
16	emb\|AJ965256.1\| Dehalococcoides sp. CBDB1 complete genome	40	8.4
17	gb\|AC139296.4\| Mus musculus BAC clone RP24-131C5 from chromosome...	40	8.4
18	gb\|AC068531.9\| Homo sapiens chromosome 17, clone RP11-463M16, co...	40	8.4
19	emb\|AL513487.3\| Human DNA sequence from clone RP13-63I15 on chro...	40	8.4
20	gb\|AC116320.5\| Mus musculus chromosome 18 clone RP23-269B16, com...	40	8.4
21	dbj\|AP008230.1\| Desulfitobacterium hafniense Y51 genomic DNA, co...	40	8.4
22	dbj\|AP007171.1\| Aspergillus oryzae RIB40 genomic DNA, SC011	40	8.4
23	gb\|AC010733.8\| Homo sapiens BAC clone RP11-373L24 from 2, comple...	40	8.4
24	gb\|AC019216.9\|AC019216 Homo sapiens BAC clone RP11-484N11 from 4...	40	8.4
25	gb\|AC016908.5\| Homo sapiens BAC clone RP11-457D4 from 2, complet...	40	8.4
26	gb\|AY157712.1\| Oryzias latipes putative zinc finger transcriptio...	40	8.4
27	gb\|AC094011.2\| Gallus gallus clone WAG-50C6, complete sequence	40	8.4
28	gb\|AC068757.20\| Homo sapiens 3 BAC RP11-49A13 (Roswell Park Canc...	40	8.4
29	gb\|AC153629.3\| Mus musculus 6 BAC RP23-462O13 (Roswell Park Canc...	40	8.4
30	ref\|XM_318820.2\| Anopheles gambiae str. PEST ENSANGP00000010112 ...	40	8.4
31	ref\|XM_318819.2\| Anopheles gambiae str. PEST ENSANGP00000010108 ...	40	8.4
32	emb\|BX000362.6\| Zebrafish DNA sequence from clone DKEYP-93D12 in...	40	8.4
33	emb\|CT025726.15\| Mouse DNA sequence from clone RP23-299H17 on ch...	40	8.4
34	emb\|AL359220.4\|CNS05TEI Human chromosome 14 DNA sequence BAC R-8...	40	8.4
35	gb\|AC116688.14\| Mus musculus chromosome 17, clone RP24-169A20, c...	40	8.4
36	gb\|AE015927.1\| Clostridium tetani E88, complete genome	40	8.4
37	gb\|AE008384.1\| Methanosarcina mazei strain Goe1, complete genome	40	8.4
38	emb\|CT030230.13\| Mouse DNA sequence from clone RP23-392N1 on chr...	40	8.4
39	gb\|AC131795.3\| Mus musculus BAC clone RP24-490N11 from 10, compl...	40	8.4
40	gb\|AC153867.3\| Mus musculus 6 BAC RP23-400K22 (Roswell Park Canc...	40	8.4
41	emb\|AL671904.8\| Mouse DNA sequence from clone RP23-243J2 on chro...	40	8.4

>ref|XM_481801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1644

 Score =  434 bits (219), Expect = e-118
 Identities = 519/617 (84%), Gaps = 2/617 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgggcggggctcatgtactacgtcctgnngctcgcaccaaaccagnacgccatacagggn 60
            ||||||||||||||||||||| || |    ||||| || |||||| ||||| ||||| | 
Sbjct: 470  tgggcggggctcatgtactacatcttccaactcgcgcccaaccag-acgccgtacagag- 527

                                                                        
Query: 61   acacatatttcttgcagaagcttttaaatcttaaagtcgatgatggctttcgaatgaacg 120
            ||||||| |||||||| |||||||  || || |||| ||| |||||||| |||||||| |
Sbjct: 528  acacatacttcttgcaaaagctttgtaacctgaaaggcgacgatggcttccgaatgaatg 587

                                                                        
Query: 121  aaattcttgtgtctctgtggtacataatgggaatctggccactggtgtacagcatgttgc 180
            |  |||||||| |||| ||||||||||||||  |||||||||| |||||||||||| |||
Sbjct: 588  atgttcttgtgcctctatggtacataatgggcctctggccactagtgtacagcatgctgc 647

                                                                        
Query: 181  ttcttcccactggaagaagttcaaaaagcaagatcccagtctggccattcctggtgcttt 240
            ||||||| ||||| |||||||||||||||||||| || ||||||||||||||  | ||||
Sbjct: 648  ttcttcctactggcagaagttcaaaaagcaagattcctgtctggccattcctaattcttt 707

                                                                        
Query: 241  catgcattggaggagcatatgcgttgattccttactttgttctgtggaaacctcctccac 300
            |||||||||| |||||||||||  ||||||| ||||||||||| ||||| ||||||||||
Sbjct: 708  catgcattgggggagcatatgccctgattccctactttgttctatggaagcctcctccac 767

                                                                        
Query: 301  ctgccattgatgaagatgaaattggacaatggccattaaaatttctcgaatctaaaataa 360
            || | |||||||| || |||||||||||||||||| | || ||||| || || ||| | |
Sbjct: 768  ctccgattgatgaggaagaaattggacaatggccactgaagtttcttgagtcaaaattga 827

                                                                        
Query: 361  ctgcaggagtaatttttgccgtgggccttgggctgattatctttgcaggcaaagctggtg 420
            ||||||||||||  ||||| |||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 828  ctgcaggagtaacgtttgctgtgggccttgggctgattgtctatgcagccaaagctggtg 887

                                                                        
Query: 421  gtgatgattggcgggaattttttcaatactttagagagagcaagtttattcatgccacgt 480
            |||| ||||||| ||||||  ||| ||||||| | || |||||||| || |||  ||| |
Sbjct: 888  gtgaagattggcaggaattcattcgatactttcgggaaagcaagttgatacatatcacct 947

                                                                        
Query: 481  gtcttgattttactttgctctcgaccttcgcgcctttttgggtctacaatgatatgacat 540
            | ||||||||   |||||||||| ||||| | || |||||||||||||| ||  ||||| 
Sbjct: 948  gccttgatttctgtttgctctcggccttctcaccattttgggtctacaacgacttgacag 1007

                                                                        
Query: 541  caagacgatggaaaaatggttcttgggttctgccactgtcacttgtgcctttgcttggac 600
            |||| |||||||||||||| |||||| |||||||  || ||||| | |||||  | ||||
Sbjct: 1008 caaggcgatggaaaaatggctcttggcttctgcccttggcacttatcccttttgtgggac 1067

                             
Query: 601  cctcattgtatcttttg 617
            | |||||||||||||||
Sbjct: 1068 cttcattgtatcttttg 1084

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>dbj|AK065348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013009K02, full
            insert sequence
          Length = 1644

 Score =  426 bits (215), Expect = e-116
 Identities = 518/617 (83%), Gaps = 2/617 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgggcggggctcatgtactacgtcctgnngctcgcaccaaaccagnacgccatacagggn 60
            ||||||||||||||||||||| || |    ||||| || |||||| ||||| ||||| | 
Sbjct: 470  tgggcggggctcatgtactacatcttccaactcgcgcccaaccag-acgccgtacagag- 527

                                                                        
Query: 61   acacatatttcttgcagaagcttttaaatcttaaagtcgatgatggctttcgaatgaacg 120
            ||||||| |||||||| |||||||  || || |||| ||| |||||||| |||||||| |
Sbjct: 528  acacatacttcttgcaaaagctttgtaacctgaaaggcgacgatggcttccgaatgaatg 587

                                                                        
Query: 121  aaattcttgtgtctctgtggtacataatgggaatctggccactggtgtacagcatgttgc 180
            |  |||||||| |||| ||||||||||||||  |||||||||| |||||||||||| |||
Sbjct: 588  atgttcttgtgcctctatggtacataatgggcctctggccactagtgtacagcatgctgc 647

                                                                        
Query: 181  ttcttcccactggaagaagttcaaaaagcaagatcccagtctggccattcctggtgcttt 240
            ||||||| ||||| |||||||||||||||||||| || ||||||||||||||  | ||||
Sbjct: 648  ttcttcctactggcagaagttcaaaaagcaagattcctgtctggccattcctaattcttt 707

                                                                        
Query: 241  catgcattggaggagcatatgcgttgattccttactttgttctgtggaaacctcctccac 300
            |||||||||| |||||||||||  ||||||| ||||||||||| ||||| ||||||||||
Sbjct: 708  catgcattgggggagcatatgccctgattccctactttgttctatggaagcctcctccac 767

                                                                        
Query: 301  ctgccattgatgaagatgaaattggacaatggccattaaaatttctcgaatctaaaataa 360
            || | |||||||| || |||||||||||||||||| | || ||||| || || ||| | |
Sbjct: 768  ctccgattgatgaggaagaaattggacaatggccactgaagtttcttgagtcaaaattga 827

                                                                        
Query: 361  ctgcaggagtaatttttgccgtgggccttgggctgattatctttgcaggcaaagctggtg 420
            ||||||||||||  ||||| |||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 828  ctgcaggagtaacgtttgctgtgggccttgggctgattgtctatgcagccaaagctggtg 887

                                                                        
Query: 421  gtgatgattggcgggaattttttcaatactttagagagagcaagtttattcatgccacgt 480
            |||| ||||||| ||||||  ||| ||||||| | || |||||||| || |||  ||| |
Sbjct: 888  gtgaagattggcaggaattcattcgatactttcgggaaagcaagttgatacatatcacct 947

                                                                        
Query: 481  gtcttgattttactttgctctcgaccttcgcgcctttttgggtctacaatgatatgacat 540
            | ||||||||   |||||||||| ||||  | || |||||||||||||| ||  ||||| 
Sbjct: 948  gccttgatttctgtttgctctcggccttttcaccattttgggtctacaacgacttgacag 1007

                                                                        
Query: 541  caagacgatggaaaaatggttcttgggttctgccactgtcacttgtgcctttgcttggac 600
            |||| |||||||||||||| |||||| |||||||  || ||||| | |||||  | ||||
Sbjct: 1008 caaggcgatggaaaaatggctcttggcttctgcccttggcacttatcccttttgtgggac 1067

                             
Query: 601  cctcattgtatcttttg 617
            | |||||||||||||||
Sbjct: 1068 cttcattgtatcttttg 1084

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  163 bits (82), Expect = 8e-37
 Identities = 151/174 (86%)
 Strand = Plus / Plus

                                                                            
Query: 198      agttcaaaaagcaagatcccagtctggccattcctggtgctttcatgcattggaggagca 257
                ||||||||||||||||| || ||||||||||||||  | |||||||||||||| ||||||
Sbjct: 15632730 agttcaaaaagcaagattcctgtctggccattcctaattctttcatgcattgggggagca 15632789

                                                                            
Query: 258      tatgcgttgattccttactttgttctgtggaaacctcctccacctgccattgatgaagat 317
                |||||  ||||||| ||||||||||| ||||| |||||||||||| | |||||||| || 
Sbjct: 15632790 tatgccctgattccctactttgttctatggaagcctcctccacctccgattgatgaggaa 15632849

                                                                      
Query: 318      gaaattggacaatggccattaaaatttctcgaatctaaaataactgcaggagta 371
                |||||||||||||||||| | || ||||| || || ||| | ||||||||||||
Sbjct: 15632850 gaaattggacaatggccactgaagtttcttgagtcaaaattgactgcaggagta 15632903



 Score =  117 bits (59), Expect = 4e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                            
Query: 61       acacatatttcttgcagaagcttttaaatcttaaagtcgatgatggctttcgaatgaacg 120
                ||||||| |||||||| |||||||  || || |||| ||| |||||||| |||||||| |
Sbjct: 15631996 acacatacttcttgcaaaagctttgtaacctgaaaggcgacgatggcttccgaatgaatg 15632055

                                                                            
Query: 121      aaattcttgtgtctctgtggtacataatgggaatctggccactggtgtacagcatgttgc 180
                |  |||||||| |||| ||||||||||||||  |||||||||| |||||||||||| |||
Sbjct: 15632056 atgttcttgtgcctctatggtacataatgggcctctggccactagtgtacagcatgctgc 15632115

                                   
Query: 181      ttcttcccactggaagaag 199
                ||||||| ||||| |||||
Sbjct: 15632116 ttcttcctactggcagaag 15632134



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                            
Query: 375      tttgccgtgggccttgggctgattatctttgcaggcaaagctggtggtgatgattggcgg 434
                ||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| |
Sbjct: 15633046 tttgctgtgggccttgggctgattgtctatgcagccaaagctggtggtgaagattggcag 15633105

                                                
Query: 435      gaattttttcaatactttagagagagcaagtt 466
                |||||  ||| ||||||| | || ||||||||
Sbjct: 15633106 gaattcattcgatactttcgggaaagcaagtt 15633137



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 550      ggaaaaatggttcttgggttctgccactgtcacttgtgcctttgcttggaccctcattgt 609
                |||||||||| |||||| |||||||  || ||||| | |||||  | ||||| |||||||
Sbjct: 15634027 ggaaaaatggctcttggcttctgcccttggcacttatcccttttgtgggaccttcattgt 15634086

                        
Query: 610      atcttttg 617
                ||||||||
Sbjct: 15634087 atcttttg 15634094



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                          
Query: 494      tttgctctcgaccttcgcgcctttttgggtctacaatgatatgacatcaagacgatgg 551
                |||||||||| ||||| | || |||||||||||||| ||  ||||| |||| ||||||
Sbjct: 15633843 tttgctctcggccttctcaccattttgggtctacaacgacttgacagcaaggcgatgg 15633900



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        tgggcggggctcatgtactac 21
                |||||||||||||||||||||
Sbjct: 15630985 tgggcggggctcatgtactac 15631005

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>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0410E11
          Length = 150200

 Score =  163 bits (82), Expect = 8e-37
 Identities = 151/174 (86%)
 Strand = Plus / Plus

                                                                         
Query: 198   agttcaaaaagcaagatcccagtctggccattcctggtgctttcatgcattggaggagca 257
             ||||||||||||||||| || ||||||||||||||  | |||||||||||||| ||||||
Sbjct: 66885 agttcaaaaagcaagattcctgtctggccattcctaattctttcatgcattgggggagca 66944

                                                                         
Query: 258   tatgcgttgattccttactttgttctgtggaaacctcctccacctgccattgatgaagat 317
             |||||  ||||||| ||||||||||| ||||| |||||||||||| | |||||||| || 
Sbjct: 66945 tatgccctgattccctactttgttctatggaagcctcctccacctccgattgatgaggaa 67004

                                                                   
Query: 318   gaaattggacaatggccattaaaatttctcgaatctaaaataactgcaggagta 371
             |||||||||||||||||| | || ||||| || || ||| | ||||||||||||
Sbjct: 67005 gaaattggacaatggccactgaagtttcttgagtcaaaattgactgcaggagta 67058



 Score =  117 bits (59), Expect = 4e-23
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                         
Query: 61    acacatatttcttgcagaagcttttaaatcttaaagtcgatgatggctttcgaatgaacg 120
             ||||||| |||||||| |||||||  || || |||| ||| |||||||| |||||||| |
Sbjct: 66151 acacatacttcttgcaaaagctttgtaacctgaaaggcgacgatggcttccgaatgaatg 66210

                                                                         
Query: 121   aaattcttgtgtctctgtggtacataatgggaatctggccactggtgtacagcatgttgc 180
             |  |||||||| |||| ||||||||||||||  |||||||||| |||||||||||| |||
Sbjct: 66211 atgttcttgtgcctctatggtacataatgggcctctggccactagtgtacagcatgctgc 66270

                                
Query: 181   ttcttcccactggaagaag 199
             ||||||| ||||| |||||
Sbjct: 66271 ttcttcctactggcagaag 66289



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                         
Query: 375   tttgccgtgggccttgggctgattatctttgcaggcaaagctggtggtgatgattggcgg 434
             ||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| |
Sbjct: 67201 tttgctgtgggccttgggctgattgtctatgcagccaaagctggtggtgaagattggcag 67260

                                             
Query: 435   gaattttttcaatactttagagagagcaagtt 466
             |||||  ||| ||||||| | || ||||||||
Sbjct: 67261 gaattcattcgatactttcgggaaagcaagtt 67292



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 550   ggaaaaatggttcttgggttctgccactgtcacttgtgcctttgcttggaccctcattgt 609
             |||||||||| |||||| |||||||  || ||||| | |||||  | ||||| |||||||
Sbjct: 68182 ggaaaaatggctcttggcttctgcccttggcacttatcccttttgtgggaccttcattgt 68241

                     
Query: 610   atcttttg 617
             ||||||||
Sbjct: 68242 atcttttg 68249



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 494   tttgctctcgaccttcgcgcctttttgggtctacaatgatatgacatcaagacgatgg 551
             |||||||||| ||||| | || |||||||||||||| ||  ||||| |||| ||||||
Sbjct: 67998 tttgctctcggccttctcaccattttgggtctacaacgacttgacagcaaggcgatgg 68055



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     tgggcggggctcatgtactac 21
             |||||||||||||||||||||
Sbjct: 65140 tgggcggggctcatgtactac 65160

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>emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12 on chromosome 3,
             complete sequence
          Length = 141577

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 108/134 (80%)
 Strand = Plus / Plus

                                                                         
Query: 66    tatttcttgcagaagcttttaaatcttaaagtcgatgatggctttcgaatgaacgaaatt 125
             ||||||||| | ||||| || ||| | |||| ||||||||| ||| ||||||| ||| | 
Sbjct: 40189 tatttcttgaaaaagctattgaatttgaaaggcgatgatggttttagaatgaatgaagtg 40248

                                                                         
Query: 126   cttgtgtctctgtggtacataatgggaatctggccactggtgtacagcatgttgcttctt 185
             ||||| |||   ||||| ||||||||  |||||||  |||| || |||||| || | |||
Sbjct: 40249 cttgtttctgaatggtatataatgggtttctggcctttggtatatagcatgctgttactt 40308

                           
Query: 186   cccactggaagaag 199
             ||||||||||||||
Sbjct: 40309 cccactggaagaag 40322



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 484   ttgattttactttgctctcgaccttcgcgcctttttgggtctacaatgatatgac 538
             ||||||||||||| ||||| || || || || |||||||| ||||||||||||||
Sbjct: 41642 ttgattttactttactctcaacattggcaccattttgggtttacaatgatatgac 41696

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>ref|XM_807795.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506175.90) partial mRNA
          Length = 2049

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 175 tgttgcttcttcccactggaagaagt 200
           ||||||| ||||||||||||||||||
Sbjct: 239 tgttgctgcttcccactggaagaagt 214

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>ref|XM_811029.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509669.150) partial mRNA
          Length = 2052

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 175 tgttgcttcttcccactggaagaagt 200
           ||||||| ||||||||||||||||||
Sbjct: 239 tgttgctgcttcccactggaagaagt 214

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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 548     atggaaaaatggttcttgggt 568
               |||||||||||||||||||||
Sbjct: 1328972 atggaaaaatggttcttgggt 1328952

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>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 230137

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    ttgcttcttcccactggaaga 197
              |||||||||||||||||||||
Sbjct: 107176 ttgcttcttcccactggaaga 107156

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>emb|AL603707.5| Mouse DNA sequence from clone RP23-422L16 on chromosome 11 Contains the
              3' end of the Sat2 gene for spermidine/spermine N1-acetyl
              transferase 2, a ribosomal potein S15A (Rps15a) pseudogene,
              a ubiquitin-like 5 (Ubl5) pseudogene, the Fxr2h gene for
              autosomal homolog of fragile X mental retardation gene 2,
              the Sox15 gene for SRY-box containing gene 15, the Mpdu1
              gene for mannose-P-dolichol utilization defect 1, the Cd68
              gene for CD68 antigen, the Eif4a1 gene for eukaryotic
              translation initiation factor 4A1, the gene for
              sentrin/SUMO-specific protease Smt3ip1, the Tnfsf13 and
              Tnfsf12 genes for tumor necrosis factor (ligand)
              superfamily members 13 and 12, three novel genes, a
              ribosomal protein L13 (Rpl13) pseudogene, the Polr2a gene
              for polymerase (RNA) II (DNA directed) polypeptide A, the
              Amac1 gene for acyl-malonyl condensing enzyme, the gene for
              a novel BTB/POZ domain containing C2H2 type zinc finger
              protein, the Chrnb1 gene for nicotinic cholinergic receptor
              beta polypeptide 1 (muscle), the Fgf11 gene for fibroblast
              growth factor 11, a novel pseudogene, the gene for the
              ortholog of human and rat neuroligin 2 NLGN2, the gene for
              a novel protein of unknown function (DUF423) family member,
              the Plscr3 gene for phospholipid scramblase 3, the 3' end
              of the Tnk1 gene for non-receptor tyrosine kinase 1 and
              nine CpG islands, complete sequence
          Length = 234182

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 151    gaatctggccactggtgtaca 171
              |||||||||||||||||||||
Sbjct: 129874 gaatctggccactggtgtaca 129894

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>gb|AC008706.5| Homo sapiens chromosome 5 clone CTB-77M23, complete sequence
          Length = 164394

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    ttcttgcagaagcttttaaat 89
             |||||||||||||||||||||
Sbjct: 72020 ttcttgcagaagcttttaaat 72040

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>gb|AC005722.1|AC005722 Homo sapiens chromosome 17, clone  hRPK.311_F_12, complete sequence
          Length = 191152

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   gctgattatctttgcaggcaa 412
             |||||||||||||||||||||
Sbjct: 85106 gctgattatctttgcaggcaa 85086

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>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     tctttgcaggcaaagctggt 419
               ||||||||||||||||||||
Sbjct: 1251567 tctttgcaggcaaagctggt 1251548

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>gb|CP000013.1| Borrelia garinii PBi, complete genome
          Length = 904246

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    aatctaaaataactgcagga 368
              ||||||||||||||||||||
Sbjct: 284609 aatctaaaataactgcagga 284628

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>gb|AY280611.1| Anopheles gambiae chloride/bicarbonate anion exchanger (AE) mRNA,
            complete cds
          Length = 3309

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  gctggtggtgatgattggcg 433
            ||||||||||||||||||||
Sbjct: 3039 gctggtggtgatgattggcg 3058

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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     tctttgcaggcaaagctggt 419
               ||||||||||||||||||||
Sbjct: 1063408 tctttgcaggcaaagctggt 1063389

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>gb|AC139296.4| Mus musculus BAC clone RP24-131C5 from chromosome 18, complete sequence
          Length = 165703

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   ttgattccttactttgttct 283
             ||||||||||||||||||||
Sbjct: 92817 ttgattccttactttgttct 92798

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>gb|AC068531.9| Homo sapiens chromosome 17, clone RP11-463M16, complete sequence
          Length = 182555

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   acctcctccacctgccattg 309
             ||||||||||||||||||||
Sbjct: 87979 acctcctccacctgccattg 87998

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>emb|AL513487.3| Human DNA sequence from clone RP13-63I15 on chromosome Xq24-26.2,
             complete sequence
          Length = 144177

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   acaatggccattaaaatttc 345
             ||||||||||||||||||||
Sbjct: 54499 acaatggccattaaaatttc 54480

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>gb|AC116320.5| Mus musculus chromosome 18 clone RP23-269B16, complete sequence
          Length = 195630

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   ttgattccttactttgttct 283
             ||||||||||||||||||||
Sbjct: 46742 ttgattccttactttgttct 46723

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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 432     cgggaattttttcaatactt 451
               ||||||||||||||||||||
Sbjct: 2425528 cgggaattttttcaatactt 2425509

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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    actggaagaagttcaaaaag 208
              ||||||||||||||||||||
Sbjct: 864113 actggaagaagttcaaaaag 864132

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>gb|AC010733.8| Homo sapiens BAC clone RP11-373L24 from 2, complete sequence
          Length = 209060

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   gtacagcatgttgcttcttc 186
             ||||||||||||||||||||
Sbjct: 84364 gtacagcatgttgcttcttc 84383

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>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence
          Length = 160858

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 592    tgcttggaccctcattgtatcttt 615
              |||||| |||||||||||||||||
Sbjct: 106131 tgcttgtaccctcattgtatcttt 106108

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>gb|AC016908.5| Homo sapiens BAC clone RP11-457D4 from 2, complete sequence
          Length = 183515

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    aaacctcctccacctgccat 307
              ||||||||||||||||||||
Sbjct: 174131 aaacctcctccacctgccat 174112

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>gb|AY157712.1| Oryzias latipes putative zinc finger transcription factor (DMRT1a)
            gene, complete cds
          Length = 27078

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 554  aaatggttcttgggttctgc 573
            ||||||||||||||||||||
Sbjct: 8615 aaatggttcttgggttctgc 8596

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>gb|AC094011.2| Gallus gallus clone WAG-50C6, complete sequence
          Length = 118914

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    atttcttgcagaagctttta 86
             ||||||||||||||||||||
Sbjct: 52127 atttcttgcagaagctttta 52108

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>gb|AC068757.20| Homo sapiens 3 BAC RP11-49A13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158438

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   tttagagagagcaagtttat 469
             ||||||||||||||||||||
Sbjct: 31466 tttagagagagcaagtttat 31485

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>gb|AC153629.3| Mus musculus 6 BAC RP23-462O13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 177194

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    gggccttgggctgattatct 402
              ||||||||||||||||||||
Sbjct: 165139 gggccttgggctgattatct 165120

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>ref|XM_318820.2| Anopheles gambiae str. PEST ENSANGP00000010112 (ENSANGG00000007623),
            partial mRNA
          Length = 2463

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  gctggtggtgatgattggcg 433
            ||||||||||||||||||||
Sbjct: 2349 gctggtggtgatgattggcg 2368

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>ref|XM_318819.2| Anopheles gambiae str. PEST ENSANGP00000010108 (ENSANGG00000007623),
            partial mRNA
          Length = 3141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  gctggtggtgatgattggcg 433
            ||||||||||||||||||||
Sbjct: 2982 gctggtggtgatgattggcg 3001

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>emb|BX000362.6| Zebrafish DNA sequence from clone DKEYP-93D12 in linkage group 20,
              complete sequence
          Length = 205186

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     gaagcttttaaatcttaaag 96
              ||||||||||||||||||||
Sbjct: 147782 gaagcttttaaatcttaaag 147763

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>emb|CT025726.15| Mouse DNA sequence from clone RP23-299H17 on chromosome 17, complete
             sequence
          Length = 127014

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    ttgcagaagcttttaaatcttaaa 95
             |||||||||| |||||||||||||
Sbjct: 45534 ttgcagaagcctttaaatcttaaa 45557

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>emb|AL359220.4|CNS05TEI Human chromosome 14 DNA sequence BAC R-855C23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196698

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 306   attgatgaagatgaaattggacaa 329
             ||||||||||||||||||| ||||
Sbjct: 64139 attgatgaagatgaaattgaacaa 64116

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>gb|AC116688.14| Mus musculus chromosome 17, clone RP24-169A20, complete sequence
          Length = 150860

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   gggaattttttcaatacttt 452
             ||||||||||||||||||||
Sbjct: 56998 gggaattttttcaatacttt 57017

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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    tgattccttactttgttctg 284
              ||||||||||||||||||||
Sbjct: 982732 tgattccttactttgttctg 982713

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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 483   cttgattttactttgctctc 502
             ||||||||||||||||||||
Sbjct: 36980 cttgattttactttgctctc 36999

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>emb|CT030230.13| Mouse DNA sequence from clone RP23-392N1 on chromosome 17, complete
              sequence
          Length = 162981

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    gggaattttttcaatacttt 452
              ||||||||||||||||||||
Sbjct: 106604 gggaattttttcaatacttt 106623

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>gb|AC131795.3| Mus musculus BAC clone RP24-490N11 from 10, complete sequence
          Length = 181961

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tccttactttgttctgtgga 288
             ||||||||||||||||||||
Sbjct: 92766 tccttactttgttctgtgga 92747

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>gb|AC153867.3| Mus musculus 6 BAC RP23-400K22 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse6 BAC Library) complete sequence
          Length = 196838

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   gggccttgggctgattatct 402
             ||||||||||||||||||||
Sbjct: 21442 gggccttgggctgattatct 21423

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>emb|AL671904.8| Mouse DNA sequence from clone RP23-243J2 on chromosome X, complete
             sequence
          Length = 132834

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   gatggaaaaatggttcttgg 566
             ||||||||||||||||||||
Sbjct: 36591 gatggaaaaatggttcttgg 36572


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,657,673
Number of Sequences: 3902068
Number of extensions: 6657673
Number of successful extensions: 138964
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138647
Number of HSP's gapped (non-prelim): 315
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result