ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7k03 |
|---|---|
| Clone Library Name | barley_pub |
>YIJ7_YEAST (P40492) Hypothetical 59.9 kDa protein in SGA1-KTR7 intergenic| region Length = 516 Score = 58.9 bits (141), Expect = 9e-09 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Frame = +3 Query: 45 EWEDIRLKRILVDYMLRMS--YYDTATKLAETSGI--------QDLVDIDVFLDAKRVID 194 +W ++ DY+ R + Y++ TK SG+ DL+D DV L+A R+ Sbjct: 137 QWYQSYTNILIGDYLTRNNPIKYNSETKDHWNSGVVFLKQSQLDDLIDYDVLLEANRIST 196 Query: 195 SL-RNKEIAPALAWCAENXXXXXXXXXXXXXXXXXQEFVELVKAKNFLQAISYARKYLAP 371 SL + + P ++W EN QE++EL+K N+ AI +++L P Sbjct: 197 SLLHERNLLPLISWINENKKTLTKKSSILEFQARLQEYIELLKVDNYTDAIVCFQRFLLP 256 Query: 372 WGSTHMKELQRVTATLVF 425 + ++ +L+ + L+F Sbjct: 257 FVKSNFTDLKLASGLLIF 274
>U2508_MOUSE (Q91YQ7) Protein UNQ2508/PRO5996 homolog| Length = 393 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 6/174 (3%) Frame = +3 Query: 36 DDAEWEDIRLKRILVDYMLRMSYYDTATKLAETSGIQDLVDIDV---FLDAKRVIDSLRN 206 D E + L+ +V+++ + A +L + S + VD+D FL+ R++++L Sbjct: 111 DSREKQQQILQMAIVEHLYQQGMLSVAEELCQESTLN--VDLDFKQPFLELNRILEALHE 168 Query: 207 KEIAPALAWCAENXXXXXXXXXXXXXXXXXQEFVELVKA--KNFLQAISYARKYLAPWGS 380 +++ PAL W + F+ L+ + L+A+SYAR + P+ Sbjct: 169 QDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPEKQLEALSYAR-HFQPFAR 227 Query: 381 THMKELQRVTATLVF-RSTTNCVSYKVLFEQNQWDFLVDQFKQEFYKLYGMTLE 539 H +E+Q + +LV+ R Y L + + W + + F ++ L G+++E Sbjct: 228 LHQREIQVMMGSLVYLRLGLEKSPYCHLLDNSHWAEICETFTRDACSLLGLSVE 281
>U2508_HUMAN (Q96G75) Protein UNQ2508/PRO5996| Length = 393 Score = 56.2 bits (134), Expect = 6e-08 Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 6/174 (3%) Frame = +3 Query: 36 DDAEWEDIRLKRILVDYMLRMSYYDTATKLAETSGIQDLVDIDV---FLDAKRVIDSLRN 206 D E + L+ +V+++ + A +L + S + VD+D FL+ R++++L Sbjct: 111 DAREQQQQILQMAIVEHLYQQGMLSVAEELCQESTLN--VDLDFKQPFLELNRILEALHE 168 Query: 207 KEIAPALAWCAENXXXXXXXXXXXXXXXXXQEFVELVKA--KNFLQAISYARKYLAPWGS 380 +++ PAL W + F+ L+ L+A+SYAR + P+ Sbjct: 169 QDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYAR-HFQPFAR 227 Query: 381 THMKELQRVTATLVF-RSTTNCVSYKVLFEQNQWDFLVDQFKQEFYKLYGMTLE 539 H +E+Q + +LV+ R Y L + + W + + F ++ L G+++E Sbjct: 228 LHQREIQVMMGSLVYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVE 281
>CT011_MOUSE (Q9D7M1) Protein C20orf11 homolog (Two-hybrid associated protein 1| with RanBPM) (Twa1) Length = 228 Score = 39.7 bits (91), Expect = 0.005 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Frame = +3 Query: 63 LKRILVDYMLRMSYYDTATKLAETSGIQDLVDIDVFLDAKRVIDSLRNKEIAPALAWCAE 242 + R++++Y++ + + A K SGI+ VD++ + ++ + + +I A+A Sbjct: 29 MNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINS 88 Query: 243 NXXXXXXXXXXXXXXXXXQEFVELVKAKNFLQAISYARKYLAPWGSTH---MKELQRVTA 413 Q +EL++ + A+ +A+ LA G + E++R A Sbjct: 89 LHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLA 148 Query: 414 TLVFRS 431 L F S Sbjct: 149 LLAFDS 154
>CT011_HUMAN (Q9NWU2) Protein C20orf11 (Two-hybrid associated protein 1 with| RanBPM) (Twa1) Length = 228 Score = 39.7 bits (91), Expect = 0.005 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Frame = +3 Query: 63 LKRILVDYMLRMSYYDTATKLAETSGIQDLVDIDVFLDAKRVIDSLRNKEIAPALAWCAE 242 + R++++Y++ + + A K SGI+ VD++ + ++ + + +I A+A Sbjct: 29 MNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINS 88 Query: 243 NXXXXXXXXXXXXXXXXXQEFVELVKAKNFLQAISYARKYLAPWGSTH---MKELQRVTA 413 Q +EL++ + A+ +A+ LA G + E++R A Sbjct: 89 LHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLA 148 Query: 414 TLVFRS 431 L F S Sbjct: 149 LLAFDS 154
>POLG_EC23W (O73556) Genome polyprotein [Contains: Coat protein VP0 (P1AB); Coat| protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome-linked protein VPg (P3 Length = 2179 Score = 31.6 bits (70), Expect = 1.5 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%) Frame = +3 Query: 45 EWEDIRLK----RILVDYMLRMSYYDTATKLAETSGIQDLVDIDVFL-----DAKRVIDS 197 +WE ++LK +I VDY R++ Y+T K E + DL D ++ DA ID Sbjct: 1339 DWETLKLKELIDKITVDYKERIANYNTWKKQLEDQTLDDLDDAVSYIKHNYPDAIPYIDE 1398 Query: 198 LRNKEIA 218 N E++ Sbjct: 1399 YLNIEMS 1405
>YCEA_ECOLI (P24188) UPF0176 protein yceA (ORF39.9)| Length = 350 Score = 31.2 bits (69), Expect = 1.9 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -3 Query: 111 CRSRTSGACNQLGCASAVCPPTRRRHRRGGSQ 16 C + G C+++ C + PP +R RR G + Sbjct: 295 CAEKYKGCCSEICCEESALPPEEQRRRRAGRE 326
>YCEA_ECOL6 (Q8FIR7) UPF0176 protein yceA| Length = 350 Score = 31.2 bits (69), Expect = 1.9 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -3 Query: 111 CRSRTSGACNQLGCASAVCPPTRRRHRRGGSQ 16 C + G C+++ C + PP +R RR G + Sbjct: 295 CAEKYKGCCSEICCEESALPPDEQRRRRAGRE 326
>YCEA_ECO57 (Q8X8P2) UPF0176 protein yceA| Length = 350 Score = 31.2 bits (69), Expect = 1.9 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -3 Query: 111 CRSRTSGACNQLGCASAVCPPTRRRHRRGGSQ 16 C + G C+++ C + PP +R RR G + Sbjct: 295 CAEKYKGCCSEICCEESALPPEEQRRRRAGRE 326
>NU5C_OENHO (Q9MTI4) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) Length = 736 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/61 (26%), Positives = 33/61 (54%) Frame = +3 Query: 24 RRAGDDAEWEDIRLKRILVDYMLRMSYYDTATKLAETSGIQDLVDIDVFLDAKRVIDSLR 203 +R+ + W+ +++ + D+ Y D+ ++ T GI+ L ++ F D +RVID + Sbjct: 643 KRSANRVMWD--KIQNWIYDWSYNRGYIDSFYTISLTGGIRGLAELSHFFD-RRVIDGIL 699 Query: 204 N 206 N Sbjct: 700 N 700
>NU5C_PACAQ (Q9MVK2) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) (Fragment) Length = 709 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 72 ILVDYMLRMSYYDTATKLAETSGIQDLVDIDVFLDAKRVIDSLRN 206 ++ D+ Y DT ++ T GI+ L ++ F D +RVID + N Sbjct: 648 LIYDWSYNRGYIDTFYSISLTKGIRGLAELTHFFD-RRVIDGITN 691
>NU5C_MALAR (Q9MVL6) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) (Fragment) Length = 707 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 72 ILVDYMLRMSYYDTATKLAETSGIQDLVDIDVFLDAKRVIDSLRN 206 ++ D+ Y DT ++ T GI+ L ++ F D +RVID + N Sbjct: 646 LIYDWSYXRGYIDTFYSISLTKGIRGLAELTHFFD-RRVIDGITN 689
>XYLB_BACSU (P39211) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)| Length = 499 Score = 30.0 bits (66), Expect = 4.3 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Frame = -3 Query: 300 PEASVKTQAYSL------ISLTGIYFLHTKLKQELFPYSEENQSLFLHLERHQYQQGPEC 139 PE KT + L +TG+ +HT+ YS+ +L LH+ R ++ Sbjct: 145 PELFKKTAVFLLPKDYVRFRMTGV--IHTE-------YSDAAGTLLLHITRKEW------ 189 Query: 138 QRFPRAWWRCRSRTSGACNQLGCASAVCPPTRRRHRRGGS 19 ++ CNQ+G ++ +CPP H GS Sbjct: 190 -------------SNDICNQIGISADICPPLVESHDCVGS 216
>SPDYC_HUMAN (Q5MJ68) Speedy protein C (Rapid inducer of G2/M progression in| oocytes C) (RINGO C) (hSpy/Ringo C) Length = 293 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = -3 Query: 267 LISLTGIYFLHTKLKQELFPYSEENQSLFLHLERHQYQQGPECQRFPRA 121 L+++ +YF LK + +S +L+L + + +GP+C+ FP A Sbjct: 88 LLAMVLVYFQRAHLKLSEYTHSSLFLALYLANDMEEDLEGPKCEIFPWA 136
>DEDD2_HUMAN (Q8WXF8) DNA-binding death effector domain-containing protein 2| (FADD-like anti-apoptotic molecule 3) (DED-containing protein FLAME-3) Length = 326 Score = 29.3 bits (64), Expect = 7.4 Identities = 19/73 (26%), Positives = 31/73 (42%) Frame = -3 Query: 240 LHTKLKQELFPYSEENQSLFLHLERHQYQQGPECQRFPRAWWRCRSRTSGACNQLGCASA 61 L + +L P+ + + ER+ Y +R + R R +S A +Q G Sbjct: 90 LRVLARHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWET 149 Query: 60 VCPPTRRRHRRGG 22 PPT+R+ R G Sbjct: 150 GSPPTKRQRRSRG 162
>IRA2_YEAST (P19158) Inhibitory regulator protein IRA2| Length = 3079 Score = 28.9 bits (63), Expect = 9.6 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -3 Query: 267 LISLTGIYFLHTKLKQELFPY 205 L SL+GI F++ K+ QE++PY Sbjct: 1324 LASLSGILFINKKILQEMYPY 1344
>LBD13_ARATH (Q9AT61) LOB domain protein 13| Length = 268 Score = 28.9 bits (63), Expect = 9.6 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Frame = -3 Query: 168 RHQYQQGPECQRFPRAWWRCRSRTSGACNQLGCASAVC-------PPTRRRHRRGGSQPV 10 RH+YQ+ + + +S +C+Q ASA+ PPT R R SQP Sbjct: 154 RHKYQEATTITSLQNNFNSTTTTSSVSCDQHALASAILLPPPPPPPPTPRPPRLLSSQPA 213 Query: 9 QP 4 P Sbjct: 214 PP 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,370,443 Number of Sequences: 219361 Number of extensions: 1221152 Number of successful extensions: 3222 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3222 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
