ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472791.1| Oryza sativa (japonica cultivar-group), predic... 68 1e-09
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-09
3dbj|AK119676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-09
4dbj|AK059231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-09
5emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 68 1e-09
6gb|AY754698.1| Zea mays Bet v I allergen mRNA, complete cds 44 0.018
7gb|AY112466.1| Zea mays CL10221_1 mRNA sequence 44 0.018
8gb|AY116306.1| Cochliobolus heterostrophus putative endoglucanas... 38 1.1
9gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 1.1
10ref|XM_393227.2| PREDICTED: Apis mellifera similar to GA17495-PA... 38 1.1
11emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 1.1
12gb|AF084456.1|AF084456 Crithidia fasciculata tryparedoxin I (txn... 38 1.1
13gb|AF055913.1|AF055913 Crithidia fasciculata tryparedoxin (TryX)... 38 1.1
14gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 38 1.1
15ref|XM_361290.1| Magnaporthe grisea 70-15 hypothetical protein (... 36 4.4
16emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 36 4.4
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.4
18dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.4
19dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 36 4.4
20emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 36 4.4
21dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 36 4.4

>ref|XM_472791.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 474

 Score = 67.9 bits (34), Expect = 1e-09
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  ggtggaggtgaagtcgccggccgacaagctgtggacgg 38
          ||||||||||||||||||||| ||||||||||||||||
Sbjct: 24 ggtggaggtgaagtcgccggcggacaagctgtggacgg 61



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 1e-09
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 1        ggtggaggtgaagtcgccggccgacaagctgtggacgg 38
                ||||||||||||||||||||| ||||||||||||||||
Sbjct: 23253234 ggtggaggtgaagtcgccggcggacaagctgtggacgg 23253271



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>dbj|AK119676.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G11, full
           insert sequence
          Length = 757

 Score = 67.9 bits (34), Expect = 1e-09
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 1   ggtggaggtgaagtcgccggccgacaagctgtggacgg 38
           ||||||||||||||||||||| ||||||||||||||||
Sbjct: 109 ggtggaggtgaagtcgccggcggacaagctgtggacgg 146



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>dbj|AK059231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E05, full
           insert sequence
          Length = 753

 Score = 67.9 bits (34), Expect = 1e-09
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 1   ggtggaggtgaagtcgccggccgacaagctgtggacgg 38
           ||||||||||||||||||||| ||||||||||||||||
Sbjct: 105 ggtggaggtgaagtcgccggcggacaagctgtggacgg 142



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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score = 67.9 bits (34), Expect = 1e-09
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 1     ggtggaggtgaagtcgccggccgacaagctgtggacgg 38
             ||||||||||||||||||||| ||||||||||||||||
Sbjct: 91387 ggtggaggtgaagtcgccggcggacaagctgtggacgg 91424



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>gb|AY754698.1| Zea mays Bet v I allergen mRNA, complete cds
          Length = 532

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 1   ggtggaggtgaagtcgccggccgacaagctgtgg 34
           ||||||||| ||||| ||||| ||||||||||||
Sbjct: 88  ggtggaggtcaagtccccggctgacaagctgtgg 121



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>gb|AY112466.1| Zea mays CL10221_1 mRNA sequence
          Length = 767

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 1   ggtggaggtgaagtcgccggccgacaagctgtgg 34
           ||||||||| ||||| ||||| ||||||||||||
Sbjct: 738 ggtggaggtcaagtccccggctgacaagctgtgg 705



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>gb|AY116306.1| Cochliobolus heterostrophus putative endoglucanase precursor (EG6)
           mRNA, complete cds
          Length = 1314

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ggtggaggtgaagtcgccg 19
           |||||||||||||||||||
Sbjct: 551 ggtggaggtgaagtcgccg 533



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 6       aggtgaagtcgccggccga 24
               |||||||||||||||||||
Sbjct: 3688576 aggtgaagtcgccggccga 3688558



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>ref|XM_393227.2| PREDICTED: Apis mellifera similar to GA17495-PA (LOC409729), mRNA
          Length = 7938

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 11   aagtcgccggccgacaagc 29
            |||||||||||||||||||
Sbjct: 2401 aagtcgccggccgacaagc 2419



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     gccggccgacaagctgtgg 34
              |||||||||||||||||||
Sbjct: 841667 gccggccgacaagctgtgg 841685



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>gb|AF084456.1|AF084456 Crithidia fasciculata tryparedoxin I (txnI) gene, complete cds
          Length = 726

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 1   ggtggaggtgaagtcgccggccgacaagctg 31
           ||||||||||||||||| ||| | |||||||
Sbjct: 120 ggtggaggtgaagtcgctggctggcaagctg 150



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>gb|AF055913.1|AF055913 Crithidia fasciculata tryparedoxin (TryX) gene, complete cds
          Length = 1292

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 1   ggtggaggtgaagtcgccggccgacaagctg 31
           ||||||||||||||||| ||| | |||||||
Sbjct: 502 ggtggaggtgaagtcgctggctggcaagctg 532



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 13      gtcgccggccgacaagctg 31
               |||||||||||||||||||
Sbjct: 2984137 gtcgccggccgacaagctg 2984119



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>ref|XM_361290.1| Magnaporthe grisea 70-15 hypothetical protein (MG03764.4) partial
           mRNA
          Length = 1467

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 4   ggaggtgaagtcgccggccgac 25
           ||||||| ||||||||||||||
Sbjct: 786 ggaggtgtagtcgccggccgac 765



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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     ggtgaagtcgccggccga 24
             ||||||||||||||||||
Sbjct: 76291 ggtgaagtcgccggccga 76308



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 4        ggaggtgaagtcgccggc 21
                ||||||||||||||||||
Sbjct: 21495531 ggaggtgaagtcgccggc 21495548



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>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0489D11
          Length = 150757

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     ggaggtgaagtcgccggc 21
             ||||||||||||||||||
Sbjct: 57141 ggaggtgaagtcgccggc 57158



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>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1210_A07
          Length = 131394

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      ggaggtgaagtcgccggc 21
              ||||||||||||||||||
Sbjct: 112636 ggaggtgaagtcgccggc 112653



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 2      gtggaggtgaagtcgccggccg 23
              |||||||||| |||||||||||
Sbjct: 332460 gtggaggtgaggtcgccggccg 332481



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 4       ggaggtgaagtcgccggccgac 25
               |||||||||||||| |||||||
Sbjct: 1764587 ggaggtgaagtcgctggccgac 1764566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189,349
Number of Sequences: 3902068
Number of extensions: 189349
Number of successful extensions: 47741
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47240
Number of HSP's gapped (non-prelim): 501
length of query: 40
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 20
effective length of database: 17,155,003,908
effective search space: 343100078160
effective search space used: 343100078160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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