| Clone Name | bags7j23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472791.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 474 Score = 67.9 bits (34), Expect = 1e-09 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctgtggacgg 38 ||||||||||||||||||||| |||||||||||||||| Sbjct: 24 ggtggaggtgaagtcgccggcggacaagctgtggacgg 61
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 1e-09 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctgtggacgg 38 ||||||||||||||||||||| |||||||||||||||| Sbjct: 23253234 ggtggaggtgaagtcgccggcggacaagctgtggacgg 23253271
>dbj|AK119676.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G11, full insert sequence Length = 757 Score = 67.9 bits (34), Expect = 1e-09 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctgtggacgg 38 ||||||||||||||||||||| |||||||||||||||| Sbjct: 109 ggtggaggtgaagtcgccggcggacaagctgtggacgg 146
>dbj|AK059231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E05, full insert sequence Length = 753 Score = 67.9 bits (34), Expect = 1e-09 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctgtggacgg 38 ||||||||||||||||||||| |||||||||||||||| Sbjct: 105 ggtggaggtgaagtcgccggcggacaagctgtggacgg 142
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence Length = 121337 Score = 67.9 bits (34), Expect = 1e-09 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctgtggacgg 38 ||||||||||||||||||||| |||||||||||||||| Sbjct: 91387 ggtggaggtgaagtcgccggcggacaagctgtggacgg 91424
>gb|AY754698.1| Zea mays Bet v I allergen mRNA, complete cds Length = 532 Score = 44.1 bits (22), Expect = 0.018 Identities = 31/34 (91%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctgtgg 34 ||||||||| ||||| ||||| |||||||||||| Sbjct: 88 ggtggaggtcaagtccccggctgacaagctgtgg 121
>gb|AY112466.1| Zea mays CL10221_1 mRNA sequence Length = 767 Score = 44.1 bits (22), Expect = 0.018 Identities = 31/34 (91%) Strand = Plus / Minus Query: 1 ggtggaggtgaagtcgccggccgacaagctgtgg 34 ||||||||| ||||| ||||| |||||||||||| Sbjct: 738 ggtggaggtcaagtccccggctgacaagctgtgg 705
>gb|AY116306.1| Cochliobolus heterostrophus putative endoglucanase precursor (EG6) mRNA, complete cds Length = 1314 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggtggaggtgaagtcgccg 19 ||||||||||||||||||| Sbjct: 551 ggtggaggtgaagtcgccg 533
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aggtgaagtcgccggccga 24 ||||||||||||||||||| Sbjct: 3688576 aggtgaagtcgccggccga 3688558
>ref|XM_393227.2| PREDICTED: Apis mellifera similar to GA17495-PA (LOC409729), mRNA Length = 7938 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aagtcgccggccgacaagc 29 ||||||||||||||||||| Sbjct: 2401 aagtcgccggccgacaagc 2419
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 gccggccgacaagctgtgg 34 ||||||||||||||||||| Sbjct: 841667 gccggccgacaagctgtgg 841685
>gb|AF084456.1|AF084456 Crithidia fasciculata tryparedoxin I (txnI) gene, complete cds Length = 726 Score = 38.2 bits (19), Expect = 1.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctg 31 ||||||||||||||||| ||| | ||||||| Sbjct: 120 ggtggaggtgaagtcgctggctggcaagctg 150
>gb|AF055913.1|AF055913 Crithidia fasciculata tryparedoxin (TryX) gene, complete cds Length = 1292 Score = 38.2 bits (19), Expect = 1.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 1 ggtggaggtgaagtcgccggccgacaagctg 31 ||||||||||||||||| ||| | ||||||| Sbjct: 502 ggtggaggtgaagtcgctggctggcaagctg 532
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gtcgccggccgacaagctg 31 ||||||||||||||||||| Sbjct: 2984137 gtcgccggccgacaagctg 2984119
>ref|XM_361290.1| Magnaporthe grisea 70-15 hypothetical protein (MG03764.4) partial mRNA Length = 1467 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 ggaggtgaagtcgccggccgac 25 ||||||| |||||||||||||| Sbjct: 786 ggaggtgtagtcgccggccgac 765
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 ggtgaagtcgccggccga 24 |||||||||||||||||| Sbjct: 76291 ggtgaagtcgccggccga 76308
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ggaggtgaagtcgccggc 21 |||||||||||||||||| Sbjct: 21495531 ggaggtgaagtcgccggc 21495548
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ggaggtgaagtcgccggc 21 |||||||||||||||||| Sbjct: 57141 ggaggtgaagtcgccggc 57158
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ggaggtgaagtcgccggc 21 |||||||||||||||||| Sbjct: 112636 ggaggtgaagtcgccggc 112653
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 2 gtggaggtgaagtcgccggccg 23 |||||||||| ||||||||||| Sbjct: 332460 gtggaggtgaggtcgccggccg 332481
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 ggaggtgaagtcgccggccgac 25 |||||||||||||| ||||||| Sbjct: 1764587 ggaggtgaagtcgctggccgac 1764566 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 189,349 Number of Sequences: 3902068 Number of extensions: 189349 Number of successful extensions: 47741 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47240 Number of HSP's gapped (non-prelim): 501 length of query: 40 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 20 effective length of database: 17,155,003,908 effective search space: 343100078160 effective search space used: 343100078160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)