ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7j01 |
|---|---|
| Clone Library Name | barley_pub |
>SPCS3_ARATH (Q9MA96) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 167 Score = 178 bits (451), Expect = 1e-44 Identities = 84/131 (64%), Positives = 102/131 (77%) Frame = +1 Query: 142 MHSFGHRXXXXXXXXXXXXXXMCFAASFSDSFNSPTPTASVKILNINWFQKEANANDEVS 321 MH+FG+R +C ASFSD F++ P+A ++ILNIN F+K+++ NDEVS Sbjct: 1 MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVS 60 Query: 322 MTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKFLIHTTNK 501 +TL+ISADL SLFTWNTKQVFVFVAAEY TP+N+LNQVSLWD IIPAKEHAKF I +NK Sbjct: 61 LTLDISADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDAIIPAKEHAKFRIQVSNK 120 Query: 502 YRFIDQGSNLK 534 YRFIDQG NL+ Sbjct: 121 YRFIDQGQNLR 131
>SPCS3_ORYSA (Q9LGB4) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 147 Score = 84.3 bits (207), Expect = 2e-16 Identities = 48/131 (36%), Positives = 63/131 (48%) Frame = +1 Query: 142 MHSFGHRXXXXXXXXXXXXXXMCFAASFSDSFNSPTPTASVKILNINWFQKEANANDEVS 321 MHS+ R C AAS D+F+ P+ A + IN F K+ N ND+V Sbjct: 1 MHSWVQRLLTTATTAALLLLAACCAASALDAFHVPSVQAQAHVTKINRFHKQLNGNDKV- 59 Query: 322 MTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKFLIHTTNK 501 FVF+ AEY +N+LNQVSLWD IIP K+ A + +K Sbjct: 60 --------------------FVFLTAEYENSKNSLNQVSLWDHIIPDKDKANLQVEVKSK 99 Query: 502 YRFIDQGSNLK 534 Y IDQGS+L+ Sbjct: 100 YPLIDQGSSLR 110
>SPCS3_CHICK (P28687) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) (gp23) Length = 180 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 3/112 (2%) Frame = +1 Query: 208 CFAASFSDSFNSPTPTA--SVKILNINWFQKEANANDEVSMTLNISADLSSLFTWNTKQV 381 CF + + P A V + N+ F +D +T +I+ADL S+F WN KQ+ Sbjct: 26 CFITTAFKERSVPVSIAVSRVTLRNVEDFTGPRERSDLAFVTFDITADLQSIFDWNVKQL 85 Query: 382 FVFVAAEYXTPQNALNQVSLWDGIIPAKEHAK-FLIHTTNKYRFIDQGSNLK 534 F++++AEY T NALNQV LWD II ++ + FL +KY F D G+ LK Sbjct: 86 FLYLSAEYSTKNNALNQVVLWDKIILRGDNPRLFLKDMKSKYFFFDDGNGLK 137
>SPCS3_HUMAN (P61009) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 74.7 bits (182), Expect = 2e-13 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Frame = +1 Query: 262 VKILNINWFQKEANANDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSL 441 + + N+ F +D +T +I+ADL ++F WN KQ+F++++AEY T NALNQV L Sbjct: 46 IMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVL 105 Query: 442 WDGIIPAKEHAKFLI-HTTNKYRFIDQGSNLK 534 WD I+ ++ K L+ KY F D G+ LK Sbjct: 106 WDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLK 137
>SPCS3_CANFA (P61008) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 74.7 bits (182), Expect = 2e-13 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Frame = +1 Query: 262 VKILNINWFQKEANANDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSL 441 + + N+ F +D +T +I+ADL ++F WN KQ+F++++AEY T NALNQV L Sbjct: 46 IMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVL 105 Query: 442 WDGIIPAKEHAKFLI-HTTNKYRFIDQGSNLK 534 WD I+ ++ K L+ KY F D G+ LK Sbjct: 106 WDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLK 137
>SPCS3_CAEEL (P34525) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 180 Score = 72.0 bits (175), Expect = 1e-12 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Frame = +1 Query: 208 CFAASFSDSFNSPTPTA--SVKILNINWFQKEANANDEVSMTLNISADLSSLFTWNTKQV 381 CF ++ + PT VK+ N+ + + D ++ N+ D S +F WN KQ+ Sbjct: 26 CFLSTVFLDYTVPTKLTVNDVKVRNVVDYATDEQQADLATLNFNLKVDFSKIFNWNVKQL 85 Query: 382 FVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKF-LIHTTNKYRFIDQGSNL 531 FV++ AEY + N +NQV LWD I+ + I +KY F+D G+NL Sbjct: 86 FVYLVAEYKSKVNEVNQVVLWDRIVERADRVVMDEIGVKSKYYFLDDGTNL 136
>SPCS3_CAEBR (Q60MW2) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 180 Score = 72.0 bits (175), Expect = 1e-12 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Frame = +1 Query: 262 VKILNINWFQKEANANDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSL 441 +KI N+ + + D ++ N+ D S LF WN KQ+FV++ AEY + +NA+NQV + Sbjct: 46 IKIRNVRDYATDDKQADLATLAFNLKVDFSRLFNWNVKQLFVYLVAEYKSAENAVNQVVI 105 Query: 442 WDGIIPAKEHAKF-LIHTTNKYRFIDQGSNL 531 WD I+ E I KY F+D G++L Sbjct: 106 WDRIVERAERVVMDEIGVKTKYYFLDDGAHL 136
>SPCS3_RAT (Q568Z4) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 69.7 bits (169), Expect = 5e-12 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Frame = +1 Query: 322 MTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKF-LIHTTN 498 +T +ISADL F WN KQ+F++++AEY T NA+NQV LWD I+ E+ K L + Sbjct: 66 ITFHISADLEKTFDWNVKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKS 125 Query: 499 KYRFIDQGSNLK 534 KY F D G LK Sbjct: 126 KYFFFDDGHGLK 137
>SPCS3_MOUSE (Q9D365) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 69.7 bits (169), Expect = 5e-12 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Frame = +1 Query: 322 MTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKF-LIHTTN 498 +T +ISADL F WN KQ+F++++AEY T NA+NQV LWD I+ E+ K L + Sbjct: 66 ITFHISADLEKTFDWNVKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKS 125 Query: 499 KYRFIDQGSNLK 534 KY F D G LK Sbjct: 126 KYFFFDDGHGLK 137
>SPCS3_DROME (Q9VCA9) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 179 Score = 68.9 bits (167), Expect = 8e-12 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Frame = +1 Query: 208 CFAASFSDSFNSPTPTASVKIL--NINWFQKEANANDEVSMTLNISADLSSLFTWNTKQV 381 CF ++ + + +V++L N+ + +D +T ++ +L+ +F WN KQ+ Sbjct: 26 CFLSTVFLDYRTDANINTVRVLVKNVPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQL 85 Query: 382 FVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKFLIHTTN-KYRFIDQGSNLK 534 F+++ AEY TP N LNQV LWD II ++A N KY F D G+ LK Sbjct: 86 FLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLK 137
>SCP3_KLULA (Q6CRY8) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 189 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Frame = +1 Query: 301 NANDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYXTPQN--ALNQVSLWDGIIPAKEHA 474 N + + N D S LF WNTKQVF +V AEY +N +N++++WD IIP++++A Sbjct: 67 NPTEVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKIIPSRDNA 126 Query: 475 KFLIHTTN-KYRFIDQGSNL 531 F + + KY+ D S + Sbjct: 127 TFTLSDIDAKYQLWDLESKI 146
>SPC3_YEAST (Q12133) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 184 Score = 59.7 bits (143), Expect = 5e-09 Identities = 28/88 (31%), Positives = 55/88 (62%), Gaps = 5/88 (5%) Frame = +1 Query: 226 SDSFNSPTPTASVK-ILNIN----WFQKEANANDEVSMTLNISADLSSLFTWNTKQVFVF 390 +++F+ P+ +VK ++N+ + + A + + + +++ DL+ LF WNTKQVFV+ Sbjct: 37 NNAFSVPSNIDNVKTLINVRTSRYFGSQRGKAKENMKIKFDLNTDLTPLFNWNTKQVFVY 96 Query: 391 VAAEYXTPQNALNQVSLWDGIIPAKEHA 474 + AEY + + ++V+ WD II +K+ A Sbjct: 97 LTAEYNSTEKITSEVTFWDKIIKSKDDA 124
>SPC3_SCHPO (Q10259) Probable microsomal signal peptidase subunit 3 (EC| 3.4.-.-) Length = 185 Score = 54.7 bits (130), Expect = 2e-07 Identities = 24/55 (43%), Positives = 35/55 (63%) Frame = +1 Query: 331 NISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKFLIHTT 495 N+ ADLS L+ WNTK V V++ A Y T ++ NQV +WD I+ + E +K + T Sbjct: 74 NMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDT 128
>SPC3_DEBHA (Q6BPD6) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 190 Score = 52.8 bits (125), Expect = 6e-07 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = +1 Query: 274 NINWFQKEANANDEVSMTLNISADLSSLFTWNTKQVFVFVAAEY-XTPQNALNQVSLWDG 450 + N+ + + ++ DLS LF WNTKQ+FV++ AEY + N+++ WD Sbjct: 59 SFNYGSVNRKPKENSRIQFDLETDLSPLFNWNTKQLFVYLTAEYPGKSDGSSNKITYWDK 118 Query: 451 IIPAKEHAKFLI-HTTNKYRFID 516 II +KE A L+ + +KY D Sbjct: 119 IITSKEDAVLLLKNQKSKYSVWD 141
>SPC3_YARLI (Q6C4R5) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 185 Score = 52.8 bits (125), Expect = 6e-07 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 8/85 (9%) Frame = +1 Query: 286 FQKEANAND------EVSMTLNISADLSSLFTWNTKQVFVFVAAEYXTPQ-NALNQVSLW 444 F ++ AND V++ ++ ADLS LF WNTK VF ++ A Y + + +N++++W Sbjct: 58 FSRQYGANDPKKGKENVALKFDLDADLSPLFNWNTKLVFAYLTATYDGKRDDIVNEITIW 117 Query: 445 DGIIPAKEHAKFLIHTTN-KYRFID 516 D II K+ + + N KY D Sbjct: 118 DQIITDKDDSHIKLKGANSKYSLYD 142
>Y1200_PYRAB (Q9UZE8) Hypothetical ATP-binding protein PYRAB12000| Length = 326 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 462 RRYDSIPKGDLIQGILWSXILSCHENKDLFRVPREERRKVGGDVQRHA 319 R D I G L + I+WS N LF PRE + + G +++HA Sbjct: 272 RENDEITYGPLSEEIVWSV-----RNNILFADPRERKLRPQGRLEKHA 314
>MATA_NEUCR (P19392) Mating-type protein A-1 (Mt A-1)| Length = 293 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +3 Query: 315 G*HDAEHLRRPFVALHVEHETGLCFRGS*V*XSTKCPESSLPLGWNHT 458 G HD E P V +++ GLC TKC ES LPL H+ Sbjct: 140 GTHDLERTALPLVQHNLQPMNGLCLL-------TKCLESGLPLANPHS 180
>TRPB_BLOFL (Q7VR00) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 398 Score = 29.3 bits (64), Expect = 7.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 418 NALNQVSLWDGIIPAKEHAKFLIH 489 NA ++SL++GIIPA E A L H Sbjct: 334 NAFQELSLYEGIIPALESAHALAH 357
>MATA_NEUAF (Q02292) Mating type protein A-1 (Mt A-1)| Length = 286 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +3 Query: 315 G*HDAEHLRRPFVALHVEHETGLCFRGS*V*XSTKCPESSLPLGWNH 455 G HD E P V +++ GLC TKC ES LPL H Sbjct: 138 GTHDLERTALPLVQHNLQPMNGLCL-------FTKCLESGLPLANPH 177
>NCA11_XENLA (P16170) Neural cell adhesion molecule 1-A precursor| Length = 1088 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/77 (25%), Positives = 30/77 (38%) Frame = +1 Query: 292 KEANANDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYXTPQNALNQVSLWDGIIPAKEH 471 K A DE+++T S D TW T +N ++ + DG I KEH Sbjct: 311 KTAVELDEITLTCEASGDPIPSITWRT------------AVRNISSEATTLDGHIVVKEH 358 Query: 472 AKFLIHTTNKYRFIDQG 522 + T ++ D G Sbjct: 359 IRMSALTLKDIQYTDAG 375
>Y173_TREPA (O83203) Hypothetical protein TP0173| Length = 227 Score = 28.9 bits (63), Expect = 9.5 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +1 Query: 307 NDEVSMTLNISADLSSLFTWNTKQ-VFVFVAAEYXTPQNALNQVSLWDGIIPAKEHAKFL 483 ND++ M LNI ++ LF+W +FV P+++ + ++ G +P + + L Sbjct: 82 NDDLIMALNIFSNRVQLFSWTYDDLMFVAGGGSELVPRSSSLFIKIFSGRVPYQAKDECL 141 Query: 484 IHT 492 + T Sbjct: 142 LFT 144
>L_RABVS (P16289) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2127 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -2 Query: 326 VMLTSSLALASFWNQLMLRILTEAVGVGELKLSEKEAAKHM 204 V SSL+L+S W +L+ +I+ VG +K +E +H+ Sbjct: 2063 VACNSSLSLSSHWIRLIYKIVKTTRLVGSIKDLSREVERHL 2103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,361,003 Number of Sequences: 219361 Number of extensions: 1014197 Number of successful extensions: 3163 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3075 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3155 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
