ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags7i20 |
|---|---|
| Clone Library Name | barley_pub |
>DOCK9_RAT (Q63603) Dedicator of cytokinesis protein 9 (Cdc42 guanine| nucleotide exchange factor zizimin 1) (TRG protein) (Fragment) Length = 720 Score = 50.1 bits (118), Expect = 1e-06 Identities = 30/89 (33%), Positives = 44/89 (49%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ LQGSV+VQVN+G L+ AFL R F+ C +A+ V+ Sbjct: 545 LQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNE 604 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYI 277 RLI E+ E+ ++ ++ + ELS I Sbjct: 605 RLIKEDQLEYQEEMKANYREIRKELSDII 633
>DOCK9_MOUSE (Q8BIK4) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide| exchange factor zizimin 1) Length = 2055 Score = 49.7 bits (117), Expect = 2e-06 Identities = 29/86 (33%), Positives = 43/86 (50%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ LQGSV+VQVN+G L+ AFL R F+ C +A+ V+ Sbjct: 1962 LQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNE 2021 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELS 268 RLI E+ E+ ++ ++ + ELS Sbjct: 2022 RLIKEDQLEYQEEMKANYREMAKELS 2047
>DOCK9_HUMAN (Q9BZ29) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide| exchange factor zizimin 1) Length = 2069 Score = 49.7 bits (117), Expect = 2e-06 Identities = 29/86 (33%), Positives = 43/86 (50%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ LQGSV+VQVN+G L+ AFL R F+ C +A+ V+ Sbjct: 1976 LQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNE 2035 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELS 268 RLI E+ E+ ++ ++ + ELS Sbjct: 2036 RLIKEDQLEYQEEMKANYREMAKELS 2061
>DOC10_MOUSE (Q8BZN6) Dedicator of cytokinesis protein 10 (Fragment)| Length = 1816 Score = 47.8 bits (112), Expect = 7e-06 Identities = 31/95 (32%), Positives = 50/95 (52%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ LQGSV+V+VN+G ++ AFL A + F C +A+ V+ Sbjct: 1679 LQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNE 1738 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYIPAILSE 295 RLI E+ E+ +L + ++ + +ELS AI++E Sbjct: 1739 RLIKEDQLEYQEELRSHYKDMLSELS----AIMNE 1769
>DOC10_HUMAN (Q96BY6) Dedicator of cytokinesis protein 10 (Protein zizimin 3)| Length = 2183 Score = 47.4 bits (111), Expect = 9e-06 Identities = 28/86 (32%), Positives = 45/86 (52%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ LQGSV+V+VN+G ++ AFL A + F C +A+ V+ Sbjct: 2054 LQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNE 2113 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELS 268 RLI E+ E+ +L + ++ + +ELS Sbjct: 2114 RLIKEDQLEYQEELRSHYKDMLSELS 2139
>DOCK6_MOUSE (Q8VDR9) Dedicator of cytokinesis protein 6 (Fragment)| Length = 849 Score = 45.1 bits (105), Expect = 4e-05 Identities = 30/96 (31%), Positives = 41/96 (42%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ +LQGSV VN G L V FLS P F C+ A+R + Sbjct: 732 LQMVLQGSVGPTVNQGPLEVAQVFLSEIPEDPKLFRHHNKLRLCFKDFCKKCEDALRKNK 791 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYIPAILSEL 298 LIG + +E+H +L + L L + L +L Sbjct: 792 ALIGPDQKEYHRELERHYSRLREALQPLLTQRLPQL 827
>DOCK8_MOUSE (Q8C147) Dedicator of cytokinesis protein 8| Length = 1037 Score = 44.3 bits (103), Expect = 8e-05 Identities = 30/96 (31%), Positives = 40/96 (41%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ +LQGSV VN G L V FL+ PA F+ C A+ + Sbjct: 911 LQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEAVEKNR 970 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYIPAILSEL 298 RLI E +E+ +L + L L I + EL Sbjct: 971 RLITAEQREYQQELKKNYNKLRDSLRPMIERKIPEL 1006
>DOCK7_HUMAN (Q96N67) Dedicator of cytokinesis protein 7| Length = 1542 Score = 43.5 bits (101), Expect = 1e-04 Identities = 29/96 (30%), Positives = 41/96 (42%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ +LQGSV VN G L V FLS P+ F C+ A+R + Sbjct: 1423 LQMVLQGSVGTTVNQGPLEVAQVFLSEIPSDPKLFRHHNKLRLCFKDFTKRCEDALRKNK 1482 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYIPAILSEL 298 LIG + +E+ +L + L L I + +L Sbjct: 1483 SLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQL 1518
>DOCK6_HUMAN (Q96HP0) Dedicator of cytokinesis protein 6| Length = 2047 Score = 43.5 bits (101), Expect = 1e-04 Identities = 29/96 (30%), Positives = 41/96 (42%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ +LQGSV VN G L V FL+ P F C+ A+R + Sbjct: 1930 LQMVLQGSVGPTVNQGPLEVAQVFLAEIPEDPKLFRHHNKLRLCFKDFCKKCEDALRKNK 1989 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYIPAILSEL 298 LIG + +E+H +L + L L + L +L Sbjct: 1990 ALIGPDQKEYHRELERNYCRLREALQPLLTQRLPQL 2025
>DOCK8_HUMAN (Q8NF50) Dedicator of cytokinesis protein 8| Length = 2031 Score = 43.5 bits (101), Expect = 1e-04 Identities = 29/96 (30%), Positives = 40/96 (41%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ +LQGSV VN G L V FL+ PA F+ C A+ + Sbjct: 1905 LQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEAVEKNK 1964 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYIPAILSEL 298 RLI + +E+ +L + L L I + EL Sbjct: 1965 RLITADQREYQQELKKNYNKLKENLRPMIERKIPEL 2000
>DOCK7_MOUSE (Q8R1A4) Dedicator of cytokinesis protein 7 (Fragment)| Length = 727 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/96 (30%), Positives = 40/96 (41%) Frame = +2 Query: 11 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXXFMAVCKRAIRVHF 190 LQ +LQGSV VN G L V FLS P F C+ A+R + Sbjct: 608 LQMVLQGSVGTTVNQGPLEVAQVFLSEIPGDPKLFRHHNKLRLCFKDFTKRCEDALRKNK 667 Query: 191 RLIGEEDQEFHTQLXNGFQSLTAELSHYIPAILSEL 298 LIG + +E+ +L + L L I + +L Sbjct: 668 SLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQL 703
>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1574 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Frame = +1 Query: 28 RKCGCSGQQWCIKRMHRFLVWRACNQAPVSRTATA-DCCXA*I-----HGCLQACNPCA 186 R+ GC+ Q WCI + R + + + Q + T CC GCL + CA Sbjct: 70 RRTGCAQQAWCIGQERRTVYYMSYRQVYATEARTVFRCCPGWSQKPGQEGCLSDVDECA 128
>FBLN2_HUMAN (P98095) Fibulin-2 precursor| Length = 1184 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +1 Query: 16 KDTPRKCGCSGQQWCIKRMHRFLVWRACNQAPVSRTATADCC 141 KD C +GQQW I + + + V RTA CC Sbjct: 439 KDLIETCCAAGQQWAIDNDECLEIPESGTEDNVCRTAQRHCC 480
>MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37)| (Cytosine-specific methyltransferase HgiCI) (M.HgiCI) Length = 420 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Frame = -1 Query: 286 YGRYIVRKLSSKRLKPIXKLRVELLVFFPYQSKM----HTDCTLADSHEFKQXSNQLLQF 119 YG Y++ S+ ++ P +LRV ++ Q ++ H T DSH+FKQ SNQ F Sbjct: 139 YGVYLILNSSNFQV-PQNRLRVYIVGLDQSQPELTITSHIGAT--DSHKFKQLSNQASLF 195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,689,235 Number of Sequences: 219361 Number of extensions: 715384 Number of successful extensions: 1470 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1468 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
