ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7h24 |
|---|---|
| Clone Library Name | barley_pub |
>Y2253_MYCBO (P64956) Hypothetical protein Mb2253c| Length = 364 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Frame = +3 Query: 141 LSCILEFDGACKGNPGKSGAGVVVRRSD-GAMIAQLREGLGIATNNXXXXXXXXXXXXXX 317 + ++E DG +GNPG +G G VV +D ++A+ ++ +G ATNN Sbjct: 1 MKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDA 60 Query: 318 XXXXFKYVRAQGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHVLR 485 DSKLV Q+ W+V++ ++ L + + L F + V R Sbjct: 61 VKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR 116
>Y2228_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287| Length = 364 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Frame = +3 Query: 141 LSCILEFDGACKGNPGKSGAGVVVRRSD-GAMIAQLREGLGIATNNXXXXXXXXXXXXXX 317 + ++E DG +GNPG +G G VV +D ++A+ ++ +G ATNN Sbjct: 1 MKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDA 60 Query: 318 XXXXFKYVRAQGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHVLR 485 DSKLV Q+ W+V++ ++ L + + L F + V R Sbjct: 61 VKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR 116
>RNH_SILPO (Q5LNJ2) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 155 Score = 37.4 bits (85), Expect = 0.027 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLRE---GLGIATNN 275 DGAC GNPG G GV++R +G + + RE G TNN Sbjct: 9 DGACSGNPGPGGWGVLLRAIEGETVLKERELCGGEAETTNN 49
>RNH_VIBPA (Q87MG2) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 154 Score = 35.4 bits (80), Expect = 0.10 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G+V+R D + L +G + TNN Sbjct: 10 DGSCLGNPGPGGYGIVLRYKD--VEKTLSKGYTLTTNN 45
>RNH_SYNEL (Q8DM24) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 159 Score = 35.4 bits (80), Expect = 0.10 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAM 233 DGAC+GNPG G GVV+ +DG++ Sbjct: 10 DGACEGNPGPGGWGVVIYFTDGSV 33
>RNHL_BACSU (P54162) 14.7 kDa ribonuclease H-like protein| Length = 132 Score = 35.0 bits (79), Expect = 0.13 Identities = 26/106 (24%), Positives = 44/106 (41%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNXXXXXXXXXXXXXXXXXXFKYV 341 DGA GNPG SG G+ ++ A + +G+ TN ++ V Sbjct: 8 DGASAGNPGPSGIGIFIKHEGKAESFSI--PIGVHTNQEAEFLALIEGMKLCATRGYQSV 65 Query: 342 RAQGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHV 479 + DS +V + +L V+N +++ LK +F F I + Sbjct: 66 SFRTDSDIV-ERATELEMVKNITFQPFVEEIIRLKAAFPLFFIKWI 110
>PANE_HALSA (Q9HRF0) Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169)| (Ketopantoate reductase) (KPA reductase) (KPR) Length = 303 Score = 35.0 bits (79), Expect = 0.13 Identities = 28/77 (36%), Positives = 39/77 (50%) Frame = +3 Query: 36 QPDGTSTLKRPQEMETGPSTKHPKVAEQEPLPDSHLSCILEFDGACKGNPGKSGAGVVVR 215 QPDGT+ + RP + T PS VA+ D + C+ +D A S A + R Sbjct: 48 QPDGTTRVTRPS-VATDPSV----VADA----DLVVVCVKSYDTA-------SAARALGR 91 Query: 216 RSDGAMIAQLREGLGIA 266 + DGAM+ L+ GLG A Sbjct: 92 QCDGAMVLTLQNGLGNA 108
>RNH_NEIG1 (Q5F7K9) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 145 Score = 35.0 bits (79), Expect = 0.13 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGACKGNPG G GV++R G+ +L G TNN Sbjct: 10 DGACKGNPGAGGWGVLMRY--GSREKELFGGEAQTTNN 45
>RNH_NEIMB (Q9JYE5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 145 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGACKGNPG G GV++R G+ +L G TNN Sbjct: 10 DGACKGNPGAGGWGVLMRY--GSHEKELFGGEAQTTNN 45
>RNH_NEIMA (Q9JTD9) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 145 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGACKGNPG G GV++R G+ +L G TNN Sbjct: 10 DGACKGNPGAGGWGVLMRY--GSHEKELFGGEAQTTNN 45
>RNH_SYNY3 (Q55801) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 160 Score = 34.3 bits (77), Expect = 0.23 Identities = 19/44 (43%), Positives = 22/44 (50%) Frame = +3 Query: 144 SCILEFDGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 S L DGAC NPG G G V+ DG +L G + TNN Sbjct: 7 SVTLYTDGACSMNPGPGGYGAVILYGDGRR-EELSAGYKMTTNN 49
>RNH_RALSO (Q8XZ91) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 151 Score = 33.9 bits (76), Expect = 0.30 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGACKGNPG G G V+ G +L G + TNN Sbjct: 9 DGACKGNPGLGGWGTVL--VSGGHEKELFGGEAVTTNN 44
>RNH_VIBVY (Q7MII6) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 155 Score = 33.9 bits (76), Expect = 0.30 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G GVV+R + L +G + TNN Sbjct: 10 DGSCLGNPGPGGYGVVLRYKQ--VEKTLAQGYRLTTNN 45
>RNH_VIBVU (Q8DBD5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 155 Score = 33.9 bits (76), Expect = 0.30 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G GVV+R + L +G + TNN Sbjct: 10 DGSCLGNPGPGGYGVVLRYKQ--VEKTLAQGYRLTTNN 45
>RNH_RHIME (Q92RG0) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 153 Score = 33.1 bits (74), Expect = 0.51 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G G V+R D + ++ G TNN Sbjct: 9 DGACSGNPGPGGWGAVLRYGD--VEKEMSGGEAETTNN 44
>RNH_WIGBR (Q8D3D3) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 157 Score = 32.7 bits (73), Expect = 0.67 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G GV++ + ++ G + TNN Sbjct: 10 DGACLGNPGPGGYGVII--CGKKLYKEISNGYYLTTNN 45
>RNH_VIBCH (Q9KPX8) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 156 Score = 32.7 bits (73), Expect = 0.67 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G+V+R + L G + TNN Sbjct: 10 DGSCLGNPGPGGYGIVMRYKQ--VEKTLARGYRLTTNN 45
>RNH_SHEON (Q8EE30) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 158 Score = 32.7 bits (73), Expect = 0.67 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G+V+ ++ +G + TNN Sbjct: 12 DGSCLGNPGPGGYGIVMNYK--GHTKEMSDGFSLTTNN 47
>RNH_PASMU (P57813) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 154 Score = 32.7 bits (73), Expect = 0.67 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G GV++R Q+ G + TNN Sbjct: 10 DGSCLGNPGPGGIGVLLRYKQHE--KQISAGYFLTTNN 45
>RNH_AGRT5 (Q8UHA7) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 146 Score = 32.7 bits (73), Expect = 0.67 Identities = 18/38 (47%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G G V+R G +L G TNN Sbjct: 9 DGACSGNPGPGGWGAVLRY--GETEKELSGGEADTTNN 44
>RNH_IDILO (Q5QZL3) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 157 Score = 32.3 bits (72), Expect = 0.87 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G V+ G +L +G + TNN Sbjct: 12 DGSCLGNPGPGGYGAVLEY--GKHHKELSQGYRLTTNN 47
>EBSB_ENTFA (P36921) Cell wall enzyme ebsB| Length = 135 Score = 32.3 bits (72), Expect = 0.87 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 D A KGNPG+SG G+V QL LGI +N+ Sbjct: 7 DAATKGNPGESGGGIVYLTDQSRQ--QLHVPLGIVSNH 42
>RNH_VIBF1 (Q5E3G5) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 157 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G+V+R EG TNN Sbjct: 14 DGSCLGNPGPGGYGIVMRYK--GTEKTFSEGFNKTTNN 49
>RNH_HAEDU (Q7VM15) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 153 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G GVV+R + ++ +G TNN Sbjct: 9 DGSCLGNPGPGGIGVVLRYNQHQ--KKVSQGYFQTTNN 44
>RNH_BRUSU (P66674) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 154 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G G ++R + +L+ G TNN Sbjct: 9 DGACSGNPGPGGWGALLRWNGNE--KELKGGEAETTNN 44
>RNH_BRUME (P66673) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 154 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G G ++R + +L+ G TNN Sbjct: 9 DGACSGNPGPGGWGALLRWNGNE--KELKGGEAETTNN 44
>RNH_BRUAB (Q57EP4) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 154 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G G ++R + +L+ G TNN Sbjct: 9 DGACSGNPGPGGWGALLRWNGNE--KELKGGEAETTNN 44
>RNH_ZYMMO (O69014) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 156 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Frame = +3 Query: 126 LPDSHLS---CILEFDGACKGNPGKSGAGVVVR 215 +PDS ++ DGACKGNPG G G ++R Sbjct: 1 MPDSSTQDKIVMIATDGACKGNPGFGGWGALLR 33
>RNH_PHOLU (Q8GF77) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 156 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G GV++R L EG TNN Sbjct: 10 DGSCLGNPGPGGYGVLLRYQQHE--KTLSEGFYRTTNN 45
>RNH_PHOLL (Q7N807) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 156 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G GV++R L EG TNN Sbjct: 10 DGSCLGNPGPGGYGVLLRYQQHE--KTLSEGFYHTTNN 45
>RNH_BUCAP (Q08885) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 161 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G ++R I L G + TNN Sbjct: 10 DGSCLGNPGSGGYGTILRYKLHEKI--LTSGFFLTTNN 45
>RNH_BRAJA (Q89UU3) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 154 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G G +++ D +L G TNN Sbjct: 12 DGACSGNPGPGGWGAILKFGDKE--KELNGGERHTTNN 47
>RNH_RHILO (Q985W1) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 177 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G G ++R + +L G TNN Sbjct: 10 DGACSGNPGPGGWGAILRFN--GTTKELSGGEAETTNN 45
>RNH_PSEPK (Q88FF5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 148 Score = 31.2 bits (69), Expect = 1.9 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVV 212 DGACKGNPG G GV++ Sbjct: 10 DGACKGNPGPGGWGVLM 26
>RNH_PSEAE (Q9I2S9) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 148 Score = 31.2 bits (69), Expect = 1.9 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +3 Query: 150 ILEFDGACKGNPGKSGAGVVV 212 ++ DGACKGNPG+ G G ++ Sbjct: 8 VIYTDGACKGNPGRGGWGALL 28
>RNH_CAUCR (Q9A341) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 149 Score = 30.8 bits (68), Expect = 2.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSD 224 DGACKGNPG G G ++ D Sbjct: 10 DGACKGNPGPGGWGAILFYGD 30
>RNH_ERWCT (Q6D1V7) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 154 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G V+R L G + TNN Sbjct: 10 DGSCLGNPGPGGYGAVLRYKQHE--KALSAGYRLTTNN 45
>RNH_RICTY (Q68W20) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 152 Score = 30.8 bits (68), Expect = 2.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 150 ILEFDGACKGNPGKSGAGVVVRRSDGA 230 ++ DGAC GNPG G G +++ +D + Sbjct: 6 VIYTDGACSGNPGPGGWGALLKFNDAS 32
>RNH_SALTY (P0A2B9) Ribonuclease HI (EC 3.1.26.4) (RNase HI) (Ribonuclease H)| (RNase H) Length = 155 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G ++R EG + TNN Sbjct: 10 DGSCLGNPGPGGYGAILRYRGHE--KTFSEGYTLTTNN 45
>RNH_SALTI (P0A2C0) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 155 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G ++R EG + TNN Sbjct: 10 DGSCLGNPGPGGYGAILRYRGHE--KTFSEGYTLTTNN 45
>RNH_SALPA (Q5PFD8) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 155 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G ++R EG + TNN Sbjct: 10 DGSCLGNPGPGGYGAILRYRGHE--KTFSEGYTLTTNN 45
>RNH_HAEI8 (Q4QP49) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 154 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DG+C GNPG G G V+R + L +G TNN Sbjct: 10 DGSCLGNPGAGGIGAVLRYKQHEKM--LSKGYFKTTNN 45
>RNH_PSESM (Q87YT0) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 150 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVV 212 DGACKGNPG G G ++ Sbjct: 10 DGACKGNPGPGGWGALL 26
>RNH_HAEIN (P43807) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 154 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVR 215 DG+C GNPG G G V+R Sbjct: 10 DGSCLGNPGAGGIGAVLR 27
>RNH_RICPR (Q9ZCK3) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 152 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 150 ILEFDGACKGNPGKSGAGVVVRRSD 224 ++ DGAC GNPG G G ++ +D Sbjct: 6 VIYTDGACSGNPGPGGWGALLHFND 30
>RNH_RICFE (Q4UN27) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 152 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 150 ILEFDGACKGNPGKSGAGVVVRRSD 224 ++ DGAC GNPG G G +++ +D Sbjct: 6 VIYTDGACAGNPGPGGWGALLQFND 30
>RNH_RICCN (Q92GL5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 152 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 150 ILEFDGACKGNPGKSGAGVVVRRSD 224 ++ DGAC GNPG G G +++ +D Sbjct: 6 VIYTDGACAGNPGPGGWGALLQFND 30
>RNH_STRCO (Q9X7R6) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 231 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGA KGNPG +G VV + + LG ATNN Sbjct: 10 DGASKGNPGPAGWAWVVADASENPVRWEAGPLGKATNN 47
>JIP_CAEEL (P34609) JNK-interacting protein (JIP) (JNK MAP kinase scaffold| protein) (Uncoordinated protein 16) Length = 1157 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/50 (36%), Positives = 21/50 (42%) Frame = +3 Query: 108 VAEQEPLPDSHLSCILEFDGACKGNPGKSGAGVVVRRSDGAMIAQLREGL 257 + E P DSHL CI G +G P + S G I L EGL Sbjct: 673 IIETFPACDSHLLCIQAVSGVMEGEPEMNEEQSKKYLSGGGKIKDLPEGL 722
>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 580 Score = 29.3 bits (64), Expect = 7.4 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 25/105 (23%) Frame = -1 Query: 379 TWLQTSLESP*ARTYLNPFLAAY---------LNPRSNARYSAALFVAIPKPSRSWAIIA 227 TW + + P +++ PFL L+P+ +A +++L+ +PKP + Sbjct: 159 TWRSLATDPP---SWVRPFLPPPKPPTPLPQPLSPQPSAPLTSSLYPVVPKPDPPKPPVL 215 Query: 226 PSD------RLTTTPAPDFPG----------FPLQAPSNSRMQDR 140 P D L T P +PG P +P SR+++R Sbjct: 216 PPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPAASPIASRLRER 260
>Y1301_METJA (Q58697) Hypothetical ATP-binding protein MJ1301| Length = 400 Score = 29.3 bits (64), Expect = 7.4 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 12/69 (17%) Frame = -3 Query: 476 MVDLKLKETSLQVLDFLAQVRHIIIPN------------TPEVLDLVTDKLRIALSTNIL 333 +VD KET+L+ +DFLA+ ++ + N P ++ V DKLR +IL Sbjct: 256 LVDDFDKETALKFMDFLAKENNMSLTNEDKELIYNYVGGKPVLIIKVIDKLRYENLNDIL 315 Query: 332 ESLLSSISQ 306 + +L +Q Sbjct: 316 DFMLKDATQ 324
>CBIO_BRUSU (Q8FZV2) Cobalt import ATP-binding protein cbiO| Length = 239 Score = 29.3 bits (64), Expect = 7.4 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = -3 Query: 485 PQNMVDLKLKETSLQVLDFLAQVRHIIIPNTPEVLDLVTDKLRIALSTNILESLLSSISQ 306 P N +D K E L +L ++ II+ + E+L+ +TD+ + + +L ++L SQ Sbjct: 164 PTNALDEKHLERMLAILS-AQKIAMIIVSHDWEILERLTDRAVVLRNGKLLPAMLHRHSQ 222 Query: 305 PQEQ 294 EQ Sbjct: 223 WSEQ 226
>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] Length = 371 Score = 28.9 bits (63), Expect = 9.6 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 15/91 (16%) Frame = -1 Query: 379 TWLQTSLESP*ARTYLNPFLAAY---------LNPRSNARYSAALFVAIPKPSRSWAIIA 227 TW + + P +++ PFL L+P+ +A +++L+ +PKP + Sbjct: 159 TWRSLATDPP---SWVRPFLPPPKPPTPLPQPLSPQPSAPLTSSLYPVVPKPDPPKPPVL 215 Query: 226 PSD------RLTTTPAPDFPGFPLQAPSNSR 152 P D L T P +PG PS R Sbjct: 216 PPDPSSPLIDLLTEEPPPYPGGHGPPPSGPR 246
>FA12_PIG (O97507) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Coagulation factor XIIa light chain] Length = 616 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = +2 Query: 167 CLQRKSREIRGWCSS-----KAVRWSYDCPTTRGFGYCNK 271 C+QR R R WC++ K RW+Y + +CNK Sbjct: 61 CIQRGQRGPRPWCATTPNFEKDQRWAYCLEPMKVKDHCNK 100
>RNH_MYCSM (Q07705) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 159 Score = 28.9 bits (63), Expect = 9.6 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 150 ILEFDGACKGNPGKSGAGVVVRRSD 224 I+ DG C+ NPG G G V+R + Sbjct: 7 IIHTDGGCRPNPGPGGWGAVLRHRE 31
>RNH_SHIFL (P0A7Y7) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 155 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVR 215 DG+C GNPG G G ++R Sbjct: 10 DGSCLGNPGPGGYGAILR 27
>RNH_ECOLI (P0A7Y4) Ribonuclease HI (EC 3.1.26.4) (RNase HI) (Ribonuclease H)| (RNase H) Length = 155 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVR 215 DG+C GNPG G G ++R Sbjct: 10 DGSCLGNPGPGGYGAILR 27
>RNH_ECOL6 (P0A7Y5) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 155 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVR 215 DG+C GNPG G G ++R Sbjct: 10 DGSCLGNPGPGGYGAILR 27
>RNH_ECO57 (P0A7Y6) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 155 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVR 215 DG+C GNPG G G ++R Sbjct: 10 DGSCLGNPGPGGYGAILR 27
>RNH_YERPS (Q667M7) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 154 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVR 215 DG+C GNPG G G ++R Sbjct: 10 DGSCLGNPGPGGYGAILR 27
>RNH_YERPE (Q8ZH30) Ribonuclease HI (EC 3.1.26.4) (RNase HI)| Length = 154 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVR 215 DG+C GNPG G G ++R Sbjct: 10 DGSCLGNPGPGGYGAILR 27
>RNH_TREPA (O83372) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 169 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 132 DSHLSCILEFDGACKGNPGKSGAGVVVRRSD 224 ++H + L DGAC GNPG G + SD Sbjct: 2 NAHAALTLYTDGACLGNPGPGGWAFALVPSD 32
>RNH_RHOBA (Q7UF86) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 158 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/38 (42%), Positives = 17/38 (44%) Frame = +3 Query: 162 DGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNN 275 DGAC GNPG G V+R Q G TNN Sbjct: 18 DGACSGNPGPGGWAFVLRCPRTLKEIQRSGGQPHTTNN 55
>SMS2_CAEEL (Q20735) Putative phosphatidylcholine:ceramide| cholinephosphotransferase 2 (EC 2.7.-.-) (Sphingomyelin synthase 2) Length = 335 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = -2 Query: 168 HHQIQECRIDDYQVMAPVQRLWDVSLMVQFPSPVAFSK 55 +HQI E R DD + AP+ RLW L F S VA K Sbjct: 272 YHQIFEMRKDD-RPQAPLSRLWWFWLCYWFESDVADGK 308 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,417,749 Number of Sequences: 219361 Number of extensions: 1742921 Number of successful extensions: 5574 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 5398 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5571 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
