| Clone Name | bags7h06 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | YPT6_CAEEL (P41884) Hypothetical protein F37A4.6 | 31 | 1.8 | 2 | FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.2... | 31 | 1.8 | 3 | TRMB_CORJK (Q4JY06) tRNA (guanine-N(7)-)-methyltransferase (EC 2... | 30 | 5.2 | 4 | CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2 | 30 | 5.2 |
|---|
>YPT6_CAEEL (P41884) Hypothetical protein F37A4.6| Length = 389 Score = 31.2 bits (69), Expect = 1.8 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = -1 Query: 260 GEERDDVDDDG-AEVLQRLLPPGQLHGVRHPLPPEHRPAHRG 138 G+E DD DD+G A+++ G+ + ++ P PPE P+ G Sbjct: 192 GDEEDDTDDEGEADLVSIKTRSGRRNVLKSPPPPERIPSSMG 233
>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) Length = 347 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 8/37 (21%) Frame = -1 Query: 200 PGQLHGVRHPLPPEH--------RPAHRGVLGGGAHV 114 P L+G RHP PPEH R HR L G V Sbjct: 195 PNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEV 231
>TRMB_CORJK (Q4JY06) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 254 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Frame = -1 Query: 233 DGAEVLQRLLPPGQLHGVR----HPLPPEHRPAHRGVLGGGAHV 114 DG EVLQR+ P L GVR P P R V G H+ Sbjct: 134 DGVEVLQRMFAPESLSGVRIYFPDPWPKARHHKRRIVQSGTLHL 177
>CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2| Length = 480 Score = 29.6 bits (65), Expect = 5.2 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%) Frame = -1 Query: 323 YMNRTDKHNTFR---RDQWGYGRLGEERDDVDDDGA-EVLQRLLPPGQL---HGVRHPLP 165 +++R + N + RD +G +LG +DD+ G+ + R L G++ HGV P Sbjct: 145 FLHRLPRPNDYPSQGRDCFGREKLGNYKDDMSGTGSLSKVNRTLYVGRIHEEHGVSSPSA 204 Query: 164 PEHRPAHRG--VLGGGAHVHE 108 P + G L GG +H+ Sbjct: 205 PANSAWRDGGKTLKGGRSIHD 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,666,183 Number of Sequences: 219361 Number of extensions: 949109 Number of successful extensions: 2762 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2712 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2761 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)