ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YPT6_CAEEL (P41884) Hypothetical protein F37A4.6 31 1.8
2FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.2... 31 1.8
3TRMB_CORJK (Q4JY06) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 30 5.2
4CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2 30 5.2

>YPT6_CAEEL (P41884) Hypothetical protein F37A4.6|
          Length = 389

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 260 GEERDDVDDDG-AEVLQRLLPPGQLHGVRHPLPPEHRPAHRG 138
           G+E DD DD+G A+++      G+ + ++ P PPE  P+  G
Sbjct: 192 GDEEDDTDDEGEADLVSIKTRSGRRNVLKSPPPPERIPSSMG 233



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>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           2)
          Length = 347

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
 Frame = -1

Query: 200 PGQLHGVRHPLPPEH--------RPAHRGVLGGGAHV 114
           P  L+G RHP PPEH        R  HR  L G   V
Sbjct: 195 PNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEV 231



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>TRMB_CORJK (Q4JY06) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 254

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 233 DGAEVLQRLLPPGQLHGVR----HPLPPEHRPAHRGVLGGGAHV 114
           DG EVLQR+  P  L GVR     P P       R V  G  H+
Sbjct: 134 DGVEVLQRMFAPESLSGVRIYFPDPWPKARHHKRRIVQSGTLHL 177



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>CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2|
          Length = 480

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
 Frame = -1

Query: 323 YMNRTDKHNTFR---RDQWGYGRLGEERDDVDDDGA-EVLQRLLPPGQL---HGVRHPLP 165
           +++R  + N +    RD +G  +LG  +DD+   G+   + R L  G++   HGV  P  
Sbjct: 145 FLHRLPRPNDYPSQGRDCFGREKLGNYKDDMSGTGSLSKVNRTLYVGRIHEEHGVSSPSA 204

Query: 164 PEHRPAHRG--VLGGGAHVHE 108
           P +     G   L GG  +H+
Sbjct: 205 PANSAWRDGGKTLKGGRSIHD 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,666,183
Number of Sequences: 219361
Number of extensions: 949109
Number of successful extensions: 2762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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