Clone Information

BLAST Search Result

Clone Name	bags7h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK111367.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
2	gb\|AF453501.1\| Actinosynnema pretiosum subsp. auranticum maytans...	46	0.11
3	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	44	0.45
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
5	dbj\|AP004168.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.45
6	gb\|AC110893.13\| Mus musculus chromosome 3, clone RP24-141D20, co...	42	1.8
7	gb\|CP000110.1\| Synechococcus sp. CC9605, complete genome	42	1.8
8	gb\|AC147924.2\| Xenopus tropicalis clone CH216-60D12, complete se...	42	1.8
9	gb\|AC158547.7\| Mus musculus chromosome 3, clone RP23-477L20, com...	42	1.8
10	ref\|XM_532134.2\| PREDICTED: Canis familiaris similar to Ubiquiti...	42	1.8
11	ref\|XM_782921.1\| PREDICTED: Strongylocentrotus purpuratus simila...	42	1.8
12	emb\|BX569689.1\| Synechococcus sp. WH8102 complete genome; segmen...	42	1.8
13	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
14	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
15	dbj\|AP003312.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
16	dbj\|AP003275.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
17	dbj\|AP005186.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
18	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	40	7.0
19	ref\|XM_428648.1\| PREDICTED: Gallus gallus similar to chB1 (LOC43...	40	7.0
20	ref\|XM_747464.1\| Aspergillus fumigatus Af293 hypothetical protei...	40	7.0
21	ref\|XM_380834.1\| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	7.0
22	ref\|XM_799921.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	7.0
23	ref\|XM_809554.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	7.0
24	gb\|AY330485.1\| Saccharopolyspora erythraea amino acid permease g...	40	7.0
25	emb\|AL160059.7\| Human DNA sequence from clone RP11-94G15 on chro...	40	7.0
26	ref\|XM_971334.1\| PREDICTED: Tribolium castaneum hypothetical pro...	40	7.0
27	emb\|X84374.3\|SCARD1GN Saccharothrix mutabilis subsp. capreolus A...	40	7.0
28	emb\|BX649605.1\| Aspergillus fumigatus BAC pilot project supercon...	40	7.0
29	emb\|AL772409.4\| Mouse DNA sequence from clone RP23-323L8 on chro...	40	7.0
30	emb\|AL450321.15\| Mouse DNA sequence from clone RP23-232M10 on ch...	40	7.0
31	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	40	7.0
32	emb\|CR353309.1\| Gallus gallus finished cDNA, clone ChEST351k13	40	7.0
33	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
34	gb\|AF492462.1\| Trypanosoma cruzi unknown mRNA	40	7.0
35	dbj\|AB159677.1\| Gallus gallus mRNA for chB1-related, complete cds	40	7.0
36	dbj\|AB159676.1\| Gallus gallus gene for chB1-related, complete cds	40	7.0
37	gb\|AC129569.17\| Mus musculus chromosome 5, clone RP23-121M13, co...	40	7.0
38	dbj\|AP003263.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
39	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	7.0
40	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	40	7.0
41	dbj\|AP005421.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
42	dbj\|AP005321.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
43	dbj\|AK059858.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.0
44	gb\|AF147703.1\|AF147703 Streptomyces fradiae demethylmacrocin O-m...	40	7.0
45	gb\|AF055922.1\|AF055922 Streptomyces fradiae dipeptidil carboxype...	40	7.0
46	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	7.0

>dbj|AK111367.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A01, full
           insert sequence
          Length = 834

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 87  gaggaggcgtacgactacgcgttcgtgcacgtgggcgccgccgccgagtaccc 139
           |||||||| |||||||| || |||||||||||  ||||||||||| |||||||
Sbjct: 420 gaggaggcctacgactatgccttcgtgcacgtcagcgccgccgcccagtaccc 472



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 221 cctctgcaccgtcgtcatcgacatcatcacgctcctc 257
           |||||||||||||||| ||||||||||| | ||||||
Sbjct: 563 cctctgcaccgtcgtcctcgacatcatctccctcctc 599

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>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor
            agent ansamitocin biosynthetic gene cluster I, partial
            sequence
          Length = 82746

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 186  gtggagctggccaggcgggaggaggcg 212
            ||||||||||||||||||| |||||||
Sbjct: 5622 gtggagctggccaggcgggtggaggcg 5648

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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 44      cgaggcgcgggaggcgctgctg 65
               ||||||||||||||||||||||
Sbjct: 3272606 cgaggcgcgggaggcgctgctg 3272627

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 41       cggcgaggcgcgggaggcgctgctggaggcgcgg 74
                ||||||||||  |||||||||||||||| |||||
Sbjct: 10901957 cggcgaggcggcggaggcgctgctggagacgcgg 10901990

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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 41     cggcgaggcgcgggaggcgctgctggaggcgcgg 74
              ||||||||||  |||||||||||||||| |||||
Sbjct: 108156 cggcgaggcggcggaggcgctgctggagacgcgg 108189

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>gb|AC110893.13| Mus musculus chromosome 3, clone RP24-141D20, complete sequence
          Length = 164857

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 471   catgttggcacacagaatttg 491
             |||||||||||||||||||||
Sbjct: 20034 catgttggcacacagaatttg 20054

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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 47      ggcgcgggaggcgctgctggaggcg 71
               |||||||||| ||||||||||||||
Sbjct: 2088143 ggcgcgggagtcgctgctggaggcg 2088119

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>gb|AC147924.2| Xenopus tropicalis clone CH216-60D12, complete sequence
          Length = 186585

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 445    ctactcctactgtaactttga 465
              |||||||||||||||||||||
Sbjct: 122270 ctactcctactgtaactttga 122250

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>gb|AC158547.7| Mus musculus chromosome 3, clone RP23-477L20, complete sequence
          Length = 182793

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 471    catgttggcacacagaatttg 491
              |||||||||||||||||||||
Sbjct: 179511 catgttggcacacagaatttg 179531

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>ref|XM_532134.2| PREDICTED: Canis familiaris similar to Ubiquitin carboxyl-terminal
           hydrolase 49 (Ubiquitin thiolesterase 49)
           (Ubiquitin-specific processing protease 49)
           (Deubiquitinating enzyme 49) (LOC474899), mRNA
          Length = 2046

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 199 ggcgggaggaggcgctggagc 219
           |||||||||||||||||||||
Sbjct: 518 ggcgggaggaggcgctggagc 538

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>ref|XM_782921.1| PREDICTED: Strongylocentrotus purpuratus similar to CG6184-PA,
            isoform A (LOC582993), partial mRNA
          Length = 1299

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 227  caccgtcgtcatcgacatcat 247
            |||||||||||||||||||||
Sbjct: 1024 caccgtcgtcatcgacatcat 1004

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>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 47     ggcgcgggaggcgctgctggaggcg 71
              ||||||||| |||||||||||||||
Sbjct: 319453 ggcgcgggaagcgctgctggaggcg 319477

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 435      tgtactggcactactcctact 455
                |||||||||||||||||||||
Sbjct: 19065156 tgtactggcactactcctact 19065136

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 198      aggcgggaggaggcgctggag 218
                |||||||||||||||||||||
Sbjct: 14474326 aggcgggaggaggcgctggag 14474346



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 65       ggaggcgcgggagtcggtgggcgaggag 92
                ||||||||||||| |||| |||||||||
Sbjct: 42396574 ggaggcgcgggagacggtcggcgaggag 42396547

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>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025H06
          Length = 151547

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 198    aggcgggaggaggcgctggag 218
              |||||||||||||||||||||
Sbjct: 135723 aggcgggaggaggcgctggag 135743

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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0514H03
          Length = 167230

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   aggcgggaggaggcgctggag 218
             |||||||||||||||||||||
Sbjct: 33639 aggcgggaggaggcgctggag 33659

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>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0430F03
          Length = 183095

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 435    tgtactggcactactcctact 455
              |||||||||||||||||||||
Sbjct: 167141 tgtactggcactactcctact 167121

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 44      cgaggcgcgggaggcgctgctggaggcg 71
               ||||||||||| |||| |||||||||||
Sbjct: 2174309 cgaggcgcgggcggcgatgctggaggcg 2174282

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>ref|XM_428648.1| PREDICTED: Gallus gallus similar to chB1 (LOC431096), partial mRNA
          Length = 315

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctggccaggcgggagg 207
           ||||||||||||||||||||
Sbjct: 176 ggagctggccaggcgggagg 195

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>ref|XM_747464.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g11910)
           partial mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 57  gcgctgctggaggcgcggga 76
           ||||||||||||||||||||
Sbjct: 383 gcgctgctggaggcgcggga 364

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>ref|XM_380834.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00658.1)
            partial mRNA
          Length = 1242

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  ccgtcgtcatcgacatcatc 248
            ||||||||||||||||||||
Sbjct: 1100 ccgtcgtcatcgacatcatc 1081

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>ref|XM_799921.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503677.29) partial mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 186 gtggagctggccaggcgggaggaggcgc 213
           |||||| ||||||||||||||| |||||
Sbjct: 232 gtggagttggccaggcgggaggcggcgc 259

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>ref|XM_809554.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053511717.70) partial mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 186 gtggagctggccaggcgggaggaggcgc 213
           |||||| ||||||||||||||| |||||
Sbjct: 232 gtggagttggccaggcgggaggcggcgc 259

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>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds;
            transport protein, helix-turn-helix regulator (pkeRI),
            P450 monooxygenase (pkePI), P450 monooxygenase (pkePII),
            P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I
            PKS (pkeAII), and type I PKS (pkeAIII) genes, complete
            cds; pkeAIV gene, complete sequence; type I PKS,
            monooxygenases, transporter, ketoacyl-ACP synthase
            (typeII), acyl carrier protien, amino transferase, and
            DNA-binding protein genes, complete cds; and unknown
            genes
          Length = 68451

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 190  agctggccaggcgggaggaggcgc 213
            ||||||||||||| ||||||||||
Sbjct: 5459 agctggccaggcgcgaggaggcgc 5482

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>emb|AL160059.7| Human DNA sequence from clone RP11-94G15 on chromosome 1 Contains the 5'
              end of the CACNA1E gene for calcium channel
              voltage-dependent alpha 1E subunit, complete sequence
          Length = 153926

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    ggagctggccaggcgggagg 207
              ||||||||||||||||||||
Sbjct: 102017 ggagctggccaggcgggagg 101998

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>ref|XM_971334.1| PREDICTED: Tribolium castaneum hypothetical protein LOC662593
           (LOC662593), mRNA
          Length = 1518

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 213 ctggagcacctctgcaccgtcgtc 236
           |||| |||||||||||||||||||
Sbjct: 365 ctggggcacctctgcaccgtcgtc 342

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>emb|X84374.3|SCARD1GN Saccharothrix mutabilis subsp. capreolus A201A biosynthetic gene
             cluster
          Length = 33676

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    gaggcgctgctggaggcgcgggag 77
             |||||||||||||||||| |||||
Sbjct: 12242 gaggcgctgctggaggcgtgggag 12219

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>emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercontig; segment 1/3
          Length = 345637

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gcgctgctggaggcgcggga 76
              ||||||||||||||||||||
Sbjct: 179058 gcgctgctggaggcgcggga 179077

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>emb|AL772409.4| Mouse DNA sequence from clone RP23-323L8 on chromosome 11 Contains the
             5' end of the Fgf18  gene for fibroblast growth factor 18,
             the Npm1 gene for nucleophosmin 1, a single-stranded DNA
             binding protein 1 (Ssbp1) pseudogene, the Tlx3 gene for
             T-cell leukemia, homeobox 3, a novel gene, the 3' end of
             the Ranbp17 gene for RAN binding protein 17, a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene
             and four CpG islands, complete sequence
          Length = 161564

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   gctggccaggcgggaggagg 210
             ||||||||||||||||||||
Sbjct: 10830 gctggccaggcgggaggagg 10811

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>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a
              novel gene, a non-POU domain containing octamer-binding
              protein (Nono) pseudogene, a Sin3-associated polypeptide 18
              (Sap18) pseudogene, the 5' end of a novel gene and a CpG
              island, complete sequence
          Length = 209175

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 230    cgtcgtcatcgacatcatcacgctcctc 257
              ||||||||||| ||||||||| ||||||
Sbjct: 168680 cgtcgtcatcgtcatcatcaccctcctc 168707

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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 234     gtcatcgacatcatcacgct 253
               ||||||||||||||||||||
Sbjct: 2256367 gtcatcgacatcatcacgct 2256348

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>emb|CR353309.1| Gallus gallus finished cDNA, clone ChEST351k13
          Length = 670

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctggccaggcgggagg 207
           ||||||||||||||||||||
Sbjct: 236 ggagctggccaggcgggagg 255

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      gcgggaggaggcgctggagc 219
                ||||||||||||||||||||
Sbjct: 13928980 gcgggaggaggcgctggagc 13928961

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>gb|AF492462.1| Trypanosoma cruzi unknown mRNA
          Length = 1713

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 186 gtggagctggccaggcgggaggaggcgc 213
           |||||| ||||||||||||||| |||||
Sbjct: 281 gtggagttggccaggcgggaggcggcgc 308

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>dbj|AB159677.1| Gallus gallus mRNA for chB1-related, complete cds
          Length = 1258

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctggccaggcgggagg 207
           ||||||||||||||||||||
Sbjct: 444 ggagctggccaggcgggagg 463

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>dbj|AB159676.1| Gallus gallus gene for chB1-related, complete cds
          Length = 3465

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  ggagctggccaggcgggagg 207
            ||||||||||||||||||||
Sbjct: 2194 ggagctggccaggcgggagg 2213

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>gb|AC129569.17| Mus musculus chromosome 5, clone RP23-121M13, complete sequence
          Length = 199799

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 470   gcatgttggcacacagaatttgag 493
             ||||||||||||||||| ||||||
Sbjct: 91709 gcatgttggcacacagagtttgag 91732

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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 65    ggaggcgcgggagtcggtgggcgaggag 92
             ||||||||||||| |||| |||||||||
Sbjct: 55912 ggaggcgcgggagacggtcggcgaggag 55885

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      gaggcgctgctggaggcgcg 73
               ||||||||||||||||||||
Sbjct: 2338585 gaggcgctgctggaggcgcg 2338566



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 115     acgtgggcgccgccgccgagtaccccgc 142
               |||||||||||| ||||||| |||||||
Sbjct: 1463441 acgtgggcgccggcgccgagcaccccgc 1463468

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     gcgccgccgccgagtacccc 140
               ||||||||||||||||||||
Sbjct: 5835110 gcgccgccgccgagtacccc 5835091

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>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0435D08
          Length = 148912

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   gcgggaggaggcgctggagc 219
             ||||||||||||||||||||
Sbjct: 82657 gcgggaggaggcgctggagc 82638

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>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0650H04
          Length = 134533

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   gcgggaggaggcgctggagc 219
             ||||||||||||||||||||
Sbjct: 31454 gcgggaggaggcgctggagc 31435

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>dbj|AK059858.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B03, full
           insert sequence
          Length = 1407

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gcgggaggaggcgctggagc 219
           ||||||||||||||||||||
Sbjct: 757 gcgggaggaggcgctggagc 776

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>gb|AF147703.1|AF147703 Streptomyces fradiae demethylmacrocin O-methyltransferase TylE
            (tylE), hypothetical NDP-hexose 4-ketoreductase TylD
            (tylD), tylodoxin (tylHII), cytochrome P450 TylHI
            (tylHI), macrocin-O-methyltransferase TylF (tylF), and
            putative NDP-hexose 3-epimerase TylJ (tylJ) genes,
            complete cds
          Length = 5833

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   gaggcgcgggaggcgctgctggag 68
            ||||||| ||||||||||||||||
Sbjct: 3221 gaggcgctggaggcgctgctggag 3198

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>gb|AF055922.1|AF055922 Streptomyces fradiae dipeptidil carboxypeptidase (ddcA), tylosin
            resistance protein (tlrB), glycosyltransferase (tylN),
            methyltransferase (tylE), 4-ketoreductase (tylD),
            ferredoxin (tylH2), cytochrome P450 (tylH1), macrocin
            O-methyltransferase (tylF), epimerase (tylJ), acyl-CoA
            oxydase (tylP), and butyrolactone receptor (tylQ) genes,
            complete cds
          Length = 12905

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   gaggcgcgggaggcgctgctggag 68
            ||||||| ||||||||||||||||
Sbjct: 7163 gaggcgctggaggcgctgctggag 7140

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     gcgggaggaggcgctggagc 219
               ||||||||||||||||||||
Sbjct: 1273914 gcgggaggaggcgctggagc 1273933


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,819,485
Number of Sequences: 3902068
Number of extensions: 3819485
Number of successful extensions: 80302
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79258
Number of HSP's gapped (non-prelim): 1044
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result