Clone Information

BLAST Search Result

Clone Name	bags7h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009409.1\| Triticum aestivum clone wlm96.pk060.l13:fis, full...	523	e-145
2	gb\|AY103693.1\| Zea mays PCO073595 mRNA sequence	440	e-120
3	gb\|BT017870.1\| Zea mays clone EL01N0512G02.c mRNA sequence	432	e-118
4	ref\|XM_481363.1\| Oryza sativa (japonica cultivar-group), mRNA	377	e-101
5	emb\|Y14368.1\|OSTHRRS Oryza sativa mRNA for threonyl-tRNA synthet...	377	e-101
6	dbj\|AK070378.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	377	e-101
7	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	9e-36
8	dbj\|AP003918.3\| Oryza sativa (japonica cultivar-group) genomic D...	159	9e-36
9	dbj\|AP005487.3\| Oryza sativa (japonica cultivar-group) genomic D...	159	9e-36
10	ref\|NM_122565.2\| Arabidopsis thaliana ATP binding / tRNA ligase/...	68	3e-08
11	emb\|Y14329.1\|ATTRRS Arabidopsis thaliana mRNA for threonyl-tRNA ...	68	3e-08
12	gb\|AY048205.1\| Arabidopsis thaliana AT5g26830/F2P16_90 mRNA, com...	68	3e-08
13	gb\|AF007270.1\|F2P16 Arabidopsis thaliana BAC F2P16, complete seq...	68	3e-08
14	gb\|BT005825.1\| Arabidopsis thaliana At5g26830/F2P16_90 gene, com...	68	3e-08
15	gb\|AC091221.3\| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell...	50	0.006
16	gb\|AC010037.7\| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell ...	50	0.006
17	gb\|AE003556.3\| Drosophila melanogaster chromosome 3L, section 29...	50	0.006
18	gb\|AC013454.6\|ATAC013454 Arabidopsis thaliana chromosome III BAC...	42	1.4
19	gb\|AC096947.2\| Homo sapiens chromosome 1 clone RP4-802A10, compl...	42	1.4
20	gb\|AC092784.2\| Homo sapiens chromosome 1 clone RP5-833A20, compl...	42	1.4
21	gb\|AC022555.8\| Homo sapiens chromosome 8, clone RP11-163N6, comp...	42	1.4
22	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	42	1.4
23	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	42	1.4
24	dbj\|AK113699.1\| Ciona intestinalis cDNA, clone:cicl004l05, full ...	42	1.4
25	ref\|NM_001031447.1\| Gallus gallus threonyl-tRNA synthetase (TARS...	40	5.7
26	gb\|CP000352.1\| Ralstonia metallidurans CH34, complete genome	40	5.7
27	emb\|CR974462.5\| Mouse DNA sequence from clone RP23-222K15 on chr...	40	5.7
28	gb\|CP000090.1\| Ralstonia eutropha JMP134 chromosome 1, complete ...	40	5.7
29	gb\|AC124917.4\| Homo sapiens chromosome 1 clone RP5-910L7, comple...	40	5.7
30	gb\|AC099689.4\| Homo sapiens chromosome 18, clone RP11-849I19, co...	40	5.7
31	emb\|AJ719623.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	5.7
32	emb\|CR857171.1\| Pongo pygmaeus mRNA; cDNA DKFZp469D0832 (from cl...	40	5.7
33	gb\|AC102477.18\| Mus musculus chromosome 5, clone RP24-405C17, co...	40	5.7
34	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
35	dbj\|AB210598.1\| Ciona intestinalis mRNA for transcription factor...	40	5.7
36	gb\|AC087255.1\|AC087255 Caenorhabditis briggsae cosmid CB021H06, ...	40	5.7
37	dbj\|AP003268.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
38	dbj\|AP003249.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
39	dbj\|AK174748.1\| Ciona intestinalis cDNA, clone:ciht018d04, full ...	40	5.7
40	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	5.7
41	gb\|AC102452.7\| Mus musculus chromosome 5, clone RP24-272L20, com...	40	5.7
42	gb\|AF100956.1\|AF100956 Mus musculus major histocompatibility loc...	40	5.7
43	gb\|U34072.1\|MMU34072 Mus musculus steroid dehydrogenase (Ke 6) g...	40	5.7
44	dbj\|AP006666.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	40	5.7
45	dbj\|AP006632.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	5.7

>gb|BT009409.1| Triticum aestivum clone wlm96.pk060.l13:fis, full insert mRNA
           sequence
          Length = 1677

 Score =  523 bits (264), Expect = e-145
 Identities = 297/308 (96%)
 Strand = Plus / Plus

                                                                       
Query: 119 gaaaatgaatttaaggttgaaataattaacgaattgcccgaggacaagaccattacagta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   gaaaatgaatttaaggttgaaataattaacgaattgcccgaggacaagaccattacagta 62

                                                                       
Query: 179 tacagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaaatacttccttt 238
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63  tacagatgtggtcctttggtcgacctctgccgtggcccgcacatcccaaatacttccttt 122

                                                                       
Query: 239 gttaaagctttcgcttgcctcaaggcttcagcatcatattggagaggaaaagcagaccgc 298
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 123 gttaaagctttcgcttgcctcaaggcttcagcatcatactggagaggaaaagcagaccgt 182

                                                                       
Query: 299 gagagcctgcagagagtatatgggatctctttccctgactctaaacgtctcaaggaatat 358
           ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 183 gagagcctgcagagagtatatggaatctccttccctgattctaaacgtctcaaggaatat 242

                                                                       
Query: 359 ctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagtcccaggaa 418
           | ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct: 243 caacatatgatagaggaagctaagaaacgcgatcataggttactagggcagtcccagaaa 302

                   
Query: 419 ctcttctt 426
           ||||||||
Sbjct: 303 ctcttctt 310

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>gb|AY103693.1| Zea mays PCO073595 mRNA sequence
          Length = 2491

 Score =  440 bits (222), Expect = e-120
 Identities = 363/410 (88%)
 Strand = Plus / Plus

                                                                        
Query: 17   cactttggtctcattgacaagcaagctaaaaaggctgttgcggagaagcaaccatttgaa 76
            ||||||||| ||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 731  cactttggtatcattgaaaaccaagctaaaaaggctgttgcggaaaagcaaccgtttgaa 790

                                                                        
Query: 77   cgcattgaagtctctagagcagaagctcttgaaatttttgccgaaaatgaatttaaggtt 136
            |||||||| |||   || ||||||||||||||||| ||||| || |||||||| ||||||
Sbjct: 791  cgcattgaggtcagcagggcagaagctcttgaaatgtttgctgagaatgaattcaaggtt 850

                                                                        
Query: 137  gaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtccttta 196
            ||||| ||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 851  gaaatcattaatgagttgcctgaggacaagaccattactgtatacaggtgtggtccttta 910

                                                                        
Query: 197  gtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcgcttgc 256
            || ||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| 
Sbjct: 911  gttgacctatgccgtgggccacacatcccaaatacttcctttgtcaaagctttcgcttgt 970

                                                                        
Query: 257  ctcaaggcttcagcatcatattggagaggaaaagcagaccgcgagagcctgcagagagta 316
            || ||||||||| |||||||||||||||||||||  |||||||| |||||||||||||||
Sbjct: 971  ctgaaggcttcatcatcatattggagaggaaaagttgaccgcgaaagcctgcagagagta 1030

                                                                        
Query: 317  tatgggatctctttccctgactctaaacgtctcaaggaatatctacatatgatagaggaa 376
            ||||| || ||||||||||| |||  |||||||| |||||||  |||| |  ||||||||
Sbjct: 1031 tatggaatttctttccctgattctcgacgtctcacggaatataaacattttctagaggaa 1090

                                                              
Query: 377  gctaagaaacgtgatcataggttattagggcagtcccaggaactcttctt 426
            ||||||||||||||||||||| |||||||| |  | ||||||||||||||
Sbjct: 1091 gctaagaaacgtgatcataggatattagggaaagcacaggaactcttctt 1140

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>gb|BT017870.1| Zea mays clone EL01N0512G02.c mRNA sequence
          Length = 848

 Score =  432 bits (218), Expect = e-118
 Identities = 362/410 (88%)
 Strand = Plus / Plus

                                                                       
Query: 17  cactttggtctcattgacaagcaagctaaaaaggctgttgcggagaagcaaccatttgaa 76
           ||||||||| ||||||| || |||||||||||||||||||||||  ||||||||||||||
Sbjct: 73  cactttggtgtcattgaaaaccaagctaaaaaggctgttgcggaacagcaaccatttgaa 132

                                                                       
Query: 77  cgcattgaagtctctagagcagaagctcttgaaatttttgccgaaaatgaatttaaggtt 136
           ||||| || |||   || ||||||||||||||||| ||||| |||||| |||| ||||||
Sbjct: 133 cgcatcgaggtcagcagggcagaagctcttgaaatgtttgctgaaaataaattcaaggtt 192

                                                                       
Query: 137 gaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtccttta 196
           ||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 193 gaaattattaatgagttgcccgaggacaagaccattacagtatacaggtgtggtccttta 252

                                                                       
Query: 197 gtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcgcttgc 256
           || ||||| |||||||| || || ||||| ||||||||||| || |||||||||||||| 
Sbjct: 253 gttgacctatgccgtgggccacatatcccgaatacttccttcgtcaaagctttcgcttgt 312

                                                                       
Query: 257 ctcaaggcttcagcatcatattggagaggaaaagcagaccgcgagagcctgcagagagta 316
           || ||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 313 ctgaaggcttcatcatcatattggagaggaaaagcagaccgtgaaagcctgcagagagta 372

                                                                       
Query: 317 tatgggatctctttccctgactctaaacgtctcaaggaatatctacatatgatagaggaa 376
           ||||| || ||||||||||| |||  |||||||| |||||||  |||| |  ||||||||
Sbjct: 373 tatggaatatctttccctgattctcgacgtctcacggaatataaacattttctagaggaa 432

                                                             
Query: 377 gctaagaaacgtgatcataggttattagggcagtcccaggaactcttctt 426
           ||||||||||||||||||||| || ||||| | || ||||||||||||||
Sbjct: 433 gctaagaaacgtgatcataggatactagggaaatcacaggaactcttctt 482

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>ref|XM_481363.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2474

 Score =  377 bits (190), Expect = e-101
 Identities = 367/426 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    gacactgaatgatacacactttggtctcattgacaagcaagctaaaaaggctgttgcgga 60
            |||| ||||||| ||||| |||||| |||||||    |||||  | || |||||||||||
Sbjct: 716  gacattgaatgagacacattttggtatcattgatgcccaagcacagaaagctgttgcgga 775

                                                                        
Query: 61   gaagcaaccatttgaacgcattgaagtctctagagcagaagctcttgaaatttttgccga 120
             || |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||
Sbjct: 776  aaaacaaccatttgaacgaattgaggtctccagggcagaggcccttgaaatgttcgcaga 835

                                                                        
Query: 121  aaatgaatttaaggttgaaataattaacgaattgcccgaggacaagaccattacagtata 180
            |||| |||||||||||||||| ||||| || ||||| || ||||||||||||||||||||
Sbjct: 836  aaataaatttaaggttgaaatcattaatgagttgcctgaagacaagaccattacagtata 895

                                                                        
Query: 181  cagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgt 240
            ||||||||||||| |||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct: 896  cagatgtggtcctctagttgacctttgccgtgggccacacatccccaatacttcctttgt 955

                                                                        
Query: 241  taaagctttcgcttgcctcaaggcttcagcatcatattggagaggaaaagcagaccgcga 300
            ||||||||| ||||| || ||||| ||| | || ||||||||||| |||||||| || ||
Sbjct: 956  taaagcttttgcttgtcttaaggcatcatcgtcgtattggagagggaaagcagatcgaga 1015

                                                                        
Query: 301  gagcctgcagagagtatatgggatctctttccctgactctaaacgtctcaaggaatatct 360
            ||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||  
Sbjct: 1016 gagcctgcagagagtatatggaatttcttttcctgattctaaacgtctcaaggaatataa 1075

                                                                        
Query: 361  acatatgatagaggaagctaagaaacgtgatcataggttattagggcagtcccaggaact 420
            |||| || |||| || |||||||| |||||||||||| ||||||| ||| ||||||| ||
Sbjct: 1076 acatctgctagaagaggctaagaagcgtgatcataggctattaggacagacccaggatct 1135

                  
Query: 421  cttctt 426
            ||||||
Sbjct: 1136 cttctt 1141

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>emb|Y14368.1|OSTHRRS Oryza sativa mRNA for threonyl-tRNA synthetase, partial
          Length = 1811

 Score =  377 bits (190), Expect = e-101
 Identities = 367/426 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacactgaatgatacacactttggtctcattgacaagcaagctaaaaaggctgttgcgga 60
           |||| ||||||| ||||| |||||| |||||||    |||||  | || |||||||||||
Sbjct: 26  gacattgaatgagacacattttggtatcattgatgcccaagcacagaaagctgttgcgga 85

                                                                       
Query: 61  gaagcaaccatttgaacgcattgaagtctctagagcagaagctcttgaaatttttgccga 120
            || |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||
Sbjct: 86  aaaacaaccatttgaacgaattgaggtctccagggcagaggcccttgaaatgttcgcaga 145

                                                                       
Query: 121 aaatgaatttaaggttgaaataattaacgaattgcccgaggacaagaccattacagtata 180
           |||| |||||||||||||||| ||||| || ||||| || ||||||||||||||||||||
Sbjct: 146 aaataaatttaaggttgaaatcattaatgagttgcctgaagacaagaccattacagtata 205

                                                                       
Query: 181 cagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgt 240
           ||||||||||||| |||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct: 206 cagatgtggtcctctagttgacctttgccgtgggccacacatccccaatacttcctttgt 265

                                                                       
Query: 241 taaagctttcgcttgcctcaaggcttcagcatcatattggagaggaaaagcagaccgcga 300
           ||||||||| ||||| || ||||| ||| | || ||||||||||| |||||||| || ||
Sbjct: 266 taaagcttttgcttgtcttaaggcatcatcgtcgtattggagagggaaagcagatcgaga 325

                                                                       
Query: 301 gagcctgcagagagtatatgggatctctttccctgactctaaacgtctcaaggaatatct 360
           ||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||  
Sbjct: 326 gagcctgcagagagtatatggaatttcttttcctgattctaaacgtctcaaggaatataa 385

                                                                       
Query: 361 acatatgatagaggaagctaagaaacgtgatcataggttattagggcagtcccaggaact 420
           |||| || |||| || |||||||| |||||||||||| ||||||| ||| ||||||| ||
Sbjct: 386 acatctgctagaagaggctaagaagcgtgatcataggctattaggacagacccaggatct 445

                 
Query: 421 cttctt 426
           ||||||
Sbjct: 446 cttctt 451

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>dbj|AK070378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052L01, full
            insert sequence
          Length = 2475

 Score =  377 bits (190), Expect = e-101
 Identities = 367/426 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    gacactgaatgatacacactttggtctcattgacaagcaagctaaaaaggctgttgcgga 60
            |||| ||||||| ||||| |||||| |||||||    |||||  | || |||||||||||
Sbjct: 716  gacattgaatgagacacattttggtatcattgatgcccaagcacagaaagctgttgcgga 775

                                                                        
Query: 61   gaagcaaccatttgaacgcattgaagtctctagagcagaagctcttgaaatttttgccga 120
             || |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||
Sbjct: 776  aaaacaaccatttgaacgaattgaggtctccagggcagaggcccttgaaatgttcgcaga 835

                                                                        
Query: 121  aaatgaatttaaggttgaaataattaacgaattgcccgaggacaagaccattacagtata 180
            |||| |||||||||||||||| ||||| || ||||| || ||||||||||||||||||||
Sbjct: 836  aaataaatttaaggttgaaatcattaatgagttgcctgaagacaagaccattacagtata 895

                                                                        
Query: 181  cagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgt 240
            ||||||||||||| |||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct: 896  cagatgtggtcctctagttgacctttgccgtgggccacacatccccaatacttcctttgt 955

                                                                        
Query: 241  taaagctttcgcttgcctcaaggcttcagcatcatattggagaggaaaagcagaccgcga 300
            ||||||||| ||||| || ||||| ||| | || ||||||||||| |||||||| || ||
Sbjct: 956  taaagcttttgcttgtcttaaggcatcatcgtcgtattggagagggaaagcagatcgaga 1015

                                                                        
Query: 301  gagcctgcagagagtatatgggatctctttccctgactctaaacgtctcaaggaatatct 360
            ||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||  
Sbjct: 1016 gagcctgcagagagtatatggaatttcttttcctgattctaaacgtctcaaggaatataa 1075

                                                                        
Query: 361  acatatgatagaggaagctaagaaacgtgatcataggttattagggcagtcccaggaact 420
            |||| || |||| || |||||||| |||||||||||| ||||||| ||| ||||||| ||
Sbjct: 1076 acatctgctagaagaggctaagaagcgtgatcataggctattaggacagacccaggatct 1135

                  
Query: 421  cttctt 426
            ||||||
Sbjct: 1136 cttctt 1141

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  159 bits (80), Expect = 9e-36
 Identities = 113/124 (91%)
 Strand = Plus / Minus

                                                                            
Query: 132      aggttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtc 191
                |||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct: 11888059 aggttgaaatcattaatgagttgcctgaagacaagaccattacagtatacagatgtggtc 11888000

                                                                            
Query: 192      ctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcg 251
                || |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |
Sbjct: 11887999 ctctagttgacctttgccgtgggccacacatccccaatacttcctttgttaaagcttttg 11887940

                    
Query: 252      cttg 255
                ||||
Sbjct: 11887939 cttg 11887936



 Score =  101 bits (51), Expect = 2e-18
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                            
Query: 275      tattggagaggaaaagcagaccgcgagagcctgcagagagtatatgggatctctttccct 334
                ||||||||||| |||||||| || ||||||||||||||||||||||| || ||||| |||
Sbjct: 11887834 tattggagagggaaagcagatcgagagagcctgcagagagtatatggaatttcttttcct 11887775

                                   
Query: 335      gactctaaacgtctcaagg 353
                || ||||||||||||||||
Sbjct: 11887774 gattctaaacgtctcaagg 11887756



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                            
Query: 351      aggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagt 410
                ||||||||  |||| || |||| || |||||||| |||||||||||| ||||||| ||| 
Sbjct: 11887259 aggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggacaga 11887200

                                
Query: 411      cccaggaactcttctt 426
                ||||||| ||||||||
Sbjct: 11887199 cccaggatctcttctt 11887184



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 65       caaccatttgaacgcattgaagtctctagagcagaagctcttgaaatttttgccgaaaat 124
                |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||||||
Sbjct: 11888451 caaccatttgaacgaattgaggtctccagggcagaggcccttgaaatgttcgcagaaaat 11888392

                          
Query: 125      gaatttaagg 134
                 |||||||||
Sbjct: 11888391 aaatttaagg 11888382

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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1705_A03
          Length = 168689

 Score =  159 bits (80), Expect = 9e-36
 Identities = 113/124 (91%)
 Strand = Plus / Minus

                                                                          
Query: 132    aggttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtc 191
              |||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct: 166344 aggttgaaatcattaatgagttgcctgaagacaagaccattacagtatacagatgtggtc 166285

                                                                          
Query: 192    ctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcg 251
              || |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |
Sbjct: 166284 ctctagttgacctttgccgtgggccacacatccccaatacttcctttgttaaagcttttg 166225

                  
Query: 252    cttg 255
              ||||
Sbjct: 166224 cttg 166221



 Score =  101 bits (51), Expect = 2e-18
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                          
Query: 275    tattggagaggaaaagcagaccgcgagagcctgcagagagtatatgggatctctttccct 334
              ||||||||||| |||||||| || ||||||||||||||||||||||| || ||||| |||
Sbjct: 166119 tattggagagggaaagcagatcgagagagcctgcagagagtatatggaatttcttttcct 166060

                                 
Query: 335    gactctaaacgtctcaagg 353
              || ||||||||||||||||
Sbjct: 166059 gattctaaacgtctcaagg 166041



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                          
Query: 351    aggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagt 410
              ||||||||  |||| || |||| || |||||||| |||||||||||| ||||||| ||| 
Sbjct: 165544 aggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggacaga 165485

                              
Query: 411    cccaggaactcttctt 426
              ||||||| ||||||||
Sbjct: 165484 cccaggatctcttctt 165469



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                          
Query: 65     caaccatttgaacgcattgaagtctctagagcagaagctcttgaaatttttgccgaaaat 124
              |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||||||
Sbjct: 166736 caaccatttgaacgaattgaggtctccagggcagaggcccttgaaatgttcgcagaaaat 166677

                        
Query: 125    gaatttaagg 134
               |||||||||
Sbjct: 166676 aaatttaagg 166667

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>dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1212_C09
          Length = 120818

 Score =  159 bits (80), Expect = 9e-36
 Identities = 113/124 (91%)
 Strand = Plus / Minus

                                                                         
Query: 132   aggttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtc 191
             |||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct: 37204 aggttgaaatcattaatgagttgcctgaagacaagaccattacagtatacagatgtggtc 37145

                                                                         
Query: 192   ctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcg 251
             || |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |
Sbjct: 37144 ctctagttgacctttgccgtgggccacacatccccaatacttcctttgttaaagcttttg 37085

                 
Query: 252   cttg 255
             ||||
Sbjct: 37084 cttg 37081



 Score =  101 bits (51), Expect = 2e-18
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                         
Query: 275   tattggagaggaaaagcagaccgcgagagcctgcagagagtatatgggatctctttccct 334
             ||||||||||| |||||||| || ||||||||||||||||||||||| || ||||| |||
Sbjct: 36979 tattggagagggaaagcagatcgagagagcctgcagagagtatatggaatttcttttcct 36920

                                
Query: 335   gactctaaacgtctcaagg 353
             || ||||||||||||||||
Sbjct: 36919 gattctaaacgtctcaagg 36901



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                         
Query: 351   aggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagt 410
             ||||||||  |||| || |||| || |||||||| |||||||||||| ||||||| ||| 
Sbjct: 36404 aggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggacaga 36345

                             
Query: 411   cccaggaactcttctt 426
             ||||||| ||||||||
Sbjct: 36344 cccaggatctcttctt 36329



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 65    caaccatttgaacgcattgaagtctctagagcagaagctcttgaaatttttgccgaaaat 124
             |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||||||
Sbjct: 37596 caaccatttgaacgaattgaggtctccagggcagaggcccttgaaatgttcgcagaaaat 37537

                       
Query: 125   gaatttaagg 134
              |||||||||
Sbjct: 37536 aaatttaagg 37527

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>ref|NM_122565.2| Arabidopsis thaliana ATP binding / tRNA ligase/ threonine-tRNA
           ligase AT5G26830 mRNA, complete cds
          Length = 2395

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 161 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 220
           |||| ||||||||| || ||||||||||| ||||| || ||  | || ||||| ||||||
Sbjct: 772 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 831

                                     
Query: 221 atcccaaatacttcctttgttaaagc 246
           || ||||||||||||||||| |||||
Sbjct: 832 ataccaaatacttcctttgtgaaagc 857

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>emb|Y14329.1|ATTRRS Arabidopsis thaliana mRNA for threonyl-tRNA synthetase
          Length = 2354

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 161 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 220
           |||| ||||||||| || ||||||||||| ||||| || ||  | || ||||| ||||||
Sbjct: 772 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 831

                                     
Query: 221 atcccaaatacttcctttgttaaagc 246
           || ||||||||||||||||| |||||
Sbjct: 832 ataccaaatacttcctttgtgaaagc 857

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>gb|AY048205.1| Arabidopsis thaliana AT5g26830/F2P16_90 mRNA, complete cds
          Length = 2260

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 161 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 220
           |||| ||||||||| || ||||||||||| ||||| || ||  | || ||||| ||||||
Sbjct: 706 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 765

                                     
Query: 221 atcccaaatacttcctttgttaaagc 246
           || ||||||||||||||||| |||||
Sbjct: 766 ataccaaatacttcctttgtgaaagc 791

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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                         
Query: 161   gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 220
             |||| ||||||||| || ||||||||||| ||||| || ||  | || ||||| ||||||
Sbjct: 40150 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 40209

                                       
Query: 221   atcccaaatacttcctttgttaaagc 246
             || ||||||||||||||||| |||||
Sbjct: 40210 ataccaaatacttcctttgtgaaagc 40235

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>gb|BT005825.1| Arabidopsis thaliana At5g26830/F2P16_90 gene, complete cds
          Length = 2031

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 161 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 220
           |||| ||||||||| || ||||||||||| ||||| || ||  | || ||||| ||||||
Sbjct: 619 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 678

                                     
Query: 221 atcccaaatacttcctttgttaaagc 246
           || ||||||||||||||||| |||||
Sbjct: 679 ataccaaatacttcctttgtgaaagc 704

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>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185790

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 118   cgaaaatgaatttaaggttgaaata 142
             |||||||||||||||||||||||||
Sbjct: 85003 cgaaaatgaatttaaggttgaaata 84979

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>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 187555

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 118    cgaaaatgaatttaaggttgaaata 142
              |||||||||||||||||||||||||
Sbjct: 139608 cgaaaatgaatttaaggttgaaata 139584

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>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete
             sequence
          Length = 281917

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 118   cgaaaatgaatttaaggttgaaata 142
             |||||||||||||||||||||||||
Sbjct: 82459 cgaaaatgaatttaaggttgaaata 82483

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>gb|AC013454.6|ATAC013454 Arabidopsis thaliana chromosome III BAC F2O10 genomic sequence,
             complete sequence
          Length = 62271

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 46    aaaggctgttgcggagaagca 66
             |||||||||||||||||||||
Sbjct: 25544 aaaggctgttgcggagaagca 25524

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>gb|AC096947.2| Homo sapiens chromosome 1 clone RP4-802A10, complete sequence
          Length = 148730

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    tttaaggttgaaataattaac 148
              |||||||||||||||||||||
Sbjct: 122726 tttaaggttgaaataattaac 122706

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>gb|AC092784.2| Homo sapiens chromosome 1 clone RP5-833A20, complete sequence
          Length = 117613

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   tttaaggttgaaataattaac 148
             |||||||||||||||||||||
Sbjct: 94652 tttaaggttgaaataattaac 94672

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>gb|AC022555.8| Homo sapiens chromosome 8, clone RP11-163N6, complete sequence
          Length = 173788

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     agagcagaagctcttgaaatt 112
              |||||||||||||||||||||
Sbjct: 145061 agagcagaagctcttgaaatt 145081

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 197     gtcgacctttgccgtggcccgcacatccc 225
               |||||||| ||||| ||||||||||||||
Sbjct: 2650651 gtcgacctgtgccgcggcccgcacatccc 2650623

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 198    tcgacctttgccgtggcccgcacat 222
              ||||||| |||||||||||||||||
Sbjct: 739639 tcgacctctgccgtggcccgcacat 739615

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>dbj|AK113699.1| Ciona intestinalis cDNA, clone:cicl004l05, full insert sequence
          Length = 2621

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 173 acagtatacagatgtggtcctttagtcgacctttgccgtgg 213
           ||||| |||||||||||||||||| | || ||||| |||||
Sbjct: 851 acagtgtacagatgtggtcctttaattgatctttgtcgtgg 891

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>ref|NM_001031447.1| Gallus gallus threonyl-tRNA synthetase (TARS), mRNA
          Length = 2483

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 acagtatacagatgtggtcc 192
           ||||||||||||||||||||
Sbjct: 755 acagtatacagatgtggtcc 774

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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 197     gtcgacctttgccgtggcccgcac 220
               |||||||| |||||||||||||||
Sbjct: 1270608 gtcgacctgtgccgtggcccgcac 1270631

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>emb|CR974462.5| Mouse DNA sequence from clone RP23-222K15 on chromosome 17, complete
              sequence
          Length = 228057

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 327    ctttccctgactctaaacgtctca 350
              ||||||||||||||||||| ||||
Sbjct: 122611 ctttccctgactctaaacggctca 122634

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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 197     gtcgacctttgccgtggcccgcac 220
               |||||||| |||||||||||||||
Sbjct: 1361550 gtcgacctgtgccgtggcccgcac 1361573

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>gb|AC124917.4| Homo sapiens chromosome 1 clone RP5-910L7, complete sequence
          Length = 156168

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   agagtatatgggatctcttt 330
             ||||||||||||||||||||
Sbjct: 80931 agagtatatgggatctcttt 80950

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>gb|AC099689.4| Homo sapiens chromosome 18, clone RP11-849I19, complete sequence
          Length = 201519

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   gaaaatgaatttaaggttgaaata 142
             |||||||||||| |||||||||||
Sbjct: 71004 gaaaatgaatttcaggttgaaata 71027

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>emb|AJ719623.1| Gallus gallus mRNA for hypothetical protein, clone 4k14
          Length = 2483

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 acagtatacagatgtggtcc 192
           ||||||||||||||||||||
Sbjct: 755 acagtatacagatgtggtcc 774

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>emb|CR857171.1| Pongo pygmaeus mRNA; cDNA DKFZp469D0832 (from clone DKFZp469D0832)
          Length = 1737

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 ccgcgagagcctgcagagag 314
           ||||||||||||||||||||
Sbjct: 51  ccgcgagagcctgcagagag 70

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>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence
          Length = 179495

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    caaatacttcctttgttaaa 244
              ||||||||||||||||||||
Sbjct: 175433 caaatacttcctttgttaaa 175414

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 395      aggttattagggcagtccca 414
                ||||||||||||||||||||
Sbjct: 31592192 aggttattagggcagtccca 31592173

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>dbj|AB210598.1| Ciona intestinalis mRNA for transcription factor protein,
          complete cds, clone: citb010f17
          Length = 1537

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 27 tcattgacaagcaagctaaa 46
          ||||||||||||||||||||
Sbjct: 51 tcattgacaagcaagctaaa 32

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>gb|AC087255.1|AC087255 Caenorhabditis briggsae cosmid CB021H06, complete sequence
          Length = 110191

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 100    agctcttgaaatttttgccgaaaatgaa 127
              |||||||||| ||| |||||||||||||
Sbjct: 103476 agctcttgaagtttgtgccgaaaatgaa 103503

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>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0503C12
          Length = 147180

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  aggttattagggcagtccca 414
            ||||||||||||||||||||
Sbjct: 5924 aggttattagggcagtccca 5905

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>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    aggttattagggcagtccca 414
              ||||||||||||||||||||
Sbjct: 105215 aggttattagggcagtccca 105196

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>dbj|AK174748.1| Ciona intestinalis cDNA, clone:ciht018d04, full insert sequence
          Length = 1534

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 27 tcattgacaagcaagctaaa 46
          ||||||||||||||||||||
Sbjct: 52 tcattgacaagcaagctaaa 33

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 197     gtcgacctttgccgtggcccgcac 220
               |||||||| |||||||||||||||
Sbjct: 1693058 gtcgacctgtgccgtggcccgcac 1693081

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>gb|AC102452.7| Mus musculus chromosome 5, clone RP24-272L20, complete sequence
          Length = 183858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    caaatacttcctttgttaaa 244
              ||||||||||||||||||||
Sbjct: 157141 caaatacttcctttgttaaa 157160

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>gb|AF100956.1|AF100956 Mus musculus major histocompatibility locus class II region; Fas-binding
              protein Daxx (DAXX) gene, partial cds; Bing1 (BING1),
              tapasin (tapasin), RalGDS-like factor (RLF), KE2 (KE2),
              BING4 (BING4), beta1, 3-galactosyl transferase
              (beta1,3-galactosyl transferase), ribosomal protein subunit
              S18 (RPS18), Sacm21 (Sacm21), H2K1(b) (H2-K1(b)), RING1
              (RING1), KE6a (KE6a), KE4 (KE4), RXRbeta (RXRbeta),
              collagen alpha-2 (XI) (COLA11A2), H2-O alpha (H2-Oalpha),
              RING3 (RING3), H2-M alpha (H2-M alpha), H2-M beta 2 (H2-M
              beta2), and H2-M beta1 (H2-M beta1) genes, complete cds;
              and LMP 2 gene, partial cds
          Length = 273800

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 327    ctttccctgactctaaacgtctca 350
              ||||||||||||||||||| ||||
Sbjct: 116092 ctttccctgactctaaacggctca 116115

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>gb|U34072.1|MMU34072 Mus musculus steroid dehydrogenase (Ke 6) gene, Ke 6a and Ke 6b
           alternatively spliced transcripts, complete cds
          Length = 3856

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 327 ctttccctgactctaaacgtctca 350
           ||||||||||||||||||| ||||
Sbjct: 252 ctttccctgactctaaacggctca 229

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>dbj|AP006666.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT46L11, TM0365,
             complete sequence
          Length = 122449

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ttgacaagcaagctaaaaag 49
             ||||||||||||||||||||
Sbjct: 46191 ttgacaagcaagctaaaaag 46210

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>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056,
             complete sequence
          Length = 102883

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 161   gacaagaccattacagtatacagatgtggtcc 192
             |||||||| || || |||||||||||||||||
Sbjct: 44937 gacaagactatcacggtatacagatgtggtcc 44906


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,824,153
Number of Sequences: 3902068
Number of extensions: 3824153
Number of successful extensions: 76252
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76084
Number of HSP's gapped (non-prelim): 168
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result