>PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 104

 Score = 36.2 bits (82), Expect = 0.055
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +1

Query: 91  PIHLQAQGPGLGRLGHDQGQGNRLQHQGQDRCRHTIRQHEAAHRPCRRNH 240
           P   Q QGPG      +QGQG  L  +  +    T R H   HR C+R H
Sbjct: 9   PSEGQHQGPGQDHEREEQGQGQELSPERVEDYGRTERGHHHRHRRCKRLH 58

>PRM2_RATFU (Q91VE1) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 105

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +1

Query: 109 QGPGLGRLGHDQGQGNRLQHQGQDRCRHTIRQHEAAHRPCRRN-----HSPQEG*RR*RG 273
           QGPG      +QGQG  L  +  +    T R H   HR C R      H  +   RR R 
Sbjct: 15  QGPGQDHEREEQGQGQELSPERVEDYGRTHRGHH-RHRRCSRKRLHRIHKRRRSCRRRRR 73

Query: 274 VKCCY 288
             CC+
Sbjct: 74  HSCCH 78

>EBP2_YEAST (P36049) rRNA-processing protein EBP2 (EBNA1-binding protein|
           homolog)
          Length = 427

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 483 ERIHIGWVPTTNTEHRSIKTRTMFGRHNQQRYHELEREFSWY 358
           ER+ + W   +  EH+S+ + T    H +  Y + ERE ++Y
Sbjct: 206 ERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFY 247

>MEIS3_HUMAN (Q99687) Homeobox protein Meis3 (Meis1-related protein 2)|
          Length = 375

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 73  DHQDADPIHLQAQGPGLGRLGHDQGQGNRLQHQGQD 180
           DH+D+  +HL   GP  G L    G  +  Q  G D
Sbjct: 206 DHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLD 241

>MEIS3_MOUSE (P97368) Homeobox protein Meis3 (Meis1-related protein 2)|
          Length = 378

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 73  DHQDADPIHLQAQGPGLGRLGHDQGQGNRLQHQGQD 180
           DH+D+  +HL   GP  G L    G  +  Q  G D
Sbjct: 209 DHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLD 244

>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = +1

Query: 52  HQDREAGDHQDADPIHLQAQGPGLGRLGHDQGQGN-----RLQHQGQDRCRH 192
           HQ +   +H+  +  H Q Q  G G  G  Q QG      R  +QG    RH
Sbjct: 180 HQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPRGSNQGHSSSRH 231

>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1|
          Length = 1024

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 8   GLGDDSIVEAELTDSTRIEKQGITKMQIPFTFRPKDLG 121
           GLG  S     +TD+  IEK  + +    F FRPKD+G
Sbjct: 457 GLGSGSDGYIVVTDNDSIEKSNLNRQ---FLFRPKDVG 491

>DZIP1_BRARE (Q7T019) Zinc finger protein Dzip1 (DAZ-interacting protein 1|
           homolog) (Iguana protein)
          Length = 898

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +3

Query: 126 PSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSAEPLASRRMTT 263
           P GT S AG P+  S  +S  +  S +   PSTMS  PL S   +T
Sbjct: 15  PPGTHSSAGIPSLLSSPQSQPSSGSQSRPAPSTMSG-PLTSSGAST 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,612,827
Number of Sequences: 219361
Number of extensions: 1335065
Number of successful extensions: 3211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3210
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)