ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7g19 |
|---|---|
| Clone Library Name | barley_pub |
>YHH2_SCHPO (Q9USV4) Hypothetical protein C28F2.02 in chromosome II| Length = 292 Score = 82.0 bits (201), Expect = 1e-15 Identities = 58/197 (29%), Positives = 79/197 (40%), Gaps = 3/197 (1%) Frame = +2 Query: 41 KVVEDKTFGLKNKNKSKNVQKYVQSLHQSVQPKPDPXXXXXXXXXXXXXXXXXXLNDL-F 217 K D TFGLKNKN+S VQ ++ + Q+ Sbjct: 23 KKAADATFGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAKA 82 Query: 218 KVAVSQPKVPVGVDPKSILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEE 397 +VA +P P++ L +V ++ +KID+YSD RD + Sbjct: 83 EVAALFNAIPKKQTPQNFLTRKEEV------------------KESQKIDLYSDVRDQQT 124 Query: 398 EDTMDD--WDQETLEKVIASKNADYQQNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGTEC 571 + ++ W TDIVCK FL+A E +YGW W CPNG C Sbjct: 125 DLPLEKRPWIN-------------------TDIVCKFFLEACETGKYGWLWQCPNGNMTC 165 Query: 572 RYRHALPPGYVLKSQMK 622 Y+HALP GYVL K Sbjct: 166 IYKHALPYGYVLSRDKK 182
>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)| Length = 544 Score = 40.4 bits (93), Expect = 0.005 Identities = 18/43 (41%), Positives = 28/43 (65%) Frame = +2 Query: 224 AVSQPKVPVGVDPKSILCEFFKVGQCQKGFKCKFSHDLNVQRK 352 A S P+ G K ILC ++ GQC++G C++SHDL+ +R+ Sbjct: 81 ARSGPERNSGSWTKQILCRYYLHGQCKEGDNCRYSHDLSGRRR 123
>MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING finger protein| 63) Length = 507 Score = 38.1 bits (87), Expect = 0.022 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +2 Query: 236 PKVPVGVDPKSILCEFFKVGQCQKGFKCKFSHDLN 340 P G+ K I+C ++ GQC++G C++SHDL+ Sbjct: 88 PSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLS 122
>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6| Length = 1177 Score = 37.7 bits (86), Expect = 0.029 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 373 +C++F G+C KG CKF+HD +++K E Y Sbjct: 275 ICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYY 308 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Frame = +2 Query: 275 CEFFKVG-QCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKV 442 C+F+ G +C +G KCKFSHD ++ ++ K+ DK +E+ +++ D+ LE++ Sbjct: 328 CKFYHSGAKCYQGDKCKFSHD-DLTKETRKL---LDKVLNADEELVNE-DERELEEL 379
>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6| Length = 1189 Score = 37.0 bits (84), Expect = 0.050 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 373 +C++F G+C KG +CKF HD ++++ E Y Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFY 310
>ZC3H8_HUMAN (Q8N5P1) Zinc finger CCCH-type domain-containing protein 8| Length = 291 Score = 36.6 bits (83), Expect = 0.065 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 373 +C++F +C KG +CKF HD +++K E Y Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFY 229
>MKRN4_HUMAN (Q13434) Makorin-4 (Zinc finger protein 127-Xp) (ZNF127-Xp) (RING| finger protein 64) Length = 485 Score = 36.6 bits (83), Expect = 0.065 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLN 340 K + C +FK G C++G C++SHDL+ Sbjct: 92 KQVTCRYFKYGICKEGDNCRYSHDLS 117
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 36.2 bits (82), Expect = 0.085 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 269 ILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 373 ++C++F G+C G C FSHD+ + +K E Y Sbjct: 394 VICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFY 428
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 36.2 bits (82), Expect = 0.085 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 269 ILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 373 ++C++F G+C G C FSHD+ + +K E Y Sbjct: 393 VICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFY 427
>MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4)| Length = 423 Score = 36.2 bits (82), Expect = 0.085 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLN 340 K + C +F G C++G +C FSHDLN Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLN 29
>MKRN1_MACEU (Q9TT91) Makorin-1| Length = 478 Score = 35.8 bits (81), Expect = 0.11 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLNVQR 349 K + C +F G C+KG C++SHDL+ + Sbjct: 53 KQVTCRYFMHGVCKKGNNCRYSHDLSTSQ 81
>ZC3H8_MOUSE (Q9JJ48) Zinc finger CCCH-type domain-containing protein 8 (Fetal| liver zinc finger protein 1) Length = 305 Score = 35.8 bits (81), Expect = 0.11 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIY 373 +C++F +C KG +CKF HD +++K E Y Sbjct: 210 VCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYY 243
>LEE1_YEAST (Q02799) Zinc finger protein LEE1| Length = 301 Score = 35.4 bits (80), Expect = 0.15 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 257 DPKSILCEFFKVGQCQKGFKCKFSHDLNV 343 D + C+FFK+G CQ G C FSH ++ Sbjct: 87 DYSHVPCKFFKMGNCQAGSSCPFSHSPDI 115
>MKRN2_BRARE (Q9DFG8) Makorin-2| Length = 414 Score = 34.7 bits (78), Expect = 0.25 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLNVQR 349 K + C +F G C++G +C FSHDL + Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLTTSK 32
>MKRN2_HUMAN (Q9H000) Makorin-2 (RING finger protein 62)| Length = 416 Score = 34.3 bits (77), Expect = 0.32 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDL 337 K I C +F G C++G +C FSHDL Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDL 28
>MKRN2_MOUSE (Q9ERV1) Makorin-2| Length = 416 Score = 33.9 bits (76), Expect = 0.42 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDL 337 K + C +F G C++G +C FSHDL Sbjct: 4 KQVTCRYFMHGVCREGSQCLFSHDL 28
>MKRN1_MOUSE (Q9QXP6) Makorin-1| Length = 481 Score = 33.9 bits (76), Expect = 0.42 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLN 340 K + C +F G C++G C++SHDL+ Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLS 82 Score = 30.0 bits (66), Expect = 6.1 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 239 KVPVGVDPKSILCEFFKVGQCQKGFKCKFSH 331 K P V+ K LC + VG+C+ G C + H Sbjct: 202 KEPTTVETKKQLCPYAAVGECRYGENCVYLH 232
>MKRN1_HUMAN (Q9UHC7) Makorin-1 (RING finger protein 61)| Length = 482 Score = 33.9 bits (76), Expect = 0.42 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLN 340 K + C +F G C++G C++SHDL+ Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLS 82 Score = 30.0 bits (66), Expect = 6.1 Identities = 9/24 (37%), Positives = 17/24 (70%) Frame = +2 Query: 260 PKSILCEFFKVGQCQKGFKCKFSH 331 P S++C++F+ G C G +C++ H Sbjct: 85 PYSVVCKYFQRGYCIYGDRCRYEH 108
>CTH1_YEAST (P47976) Zinc finger protein CTH1| Length = 325 Score = 33.5 bits (75), Expect = 0.55 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +2 Query: 263 KSILCEFFKV-GQCQKGFKCKFSHDLNVQRKGEKIDIYSDK 382 K+ LCE F + G C+ G KC+F+H LN + +K + Y K Sbjct: 206 KTELCESFTIKGYCKYGNKCQFAHGLNELKFKKKSNNYRTK 246
>SCP3_SCHPO (P41000) Protein scp3| Length = 583 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +2 Query: 260 PKSIL---CEFFKVGQCQKGFKCKFSHDLNV 343 PKS+ C+FF+ G C G C FSHDL + Sbjct: 33 PKSLQHVPCKFFRQGTCTSGKNCIFSHDLEL 63
>PRP12_HUMAN (Q9H0J9) Poly [ADP-ribose] polymerase 12 (EC 2.4.2.30) (PARP-12)| (Zinc finger CCCH type domain-containing protein 1) Length = 701 Score = 33.1 bits (74), Expect = 0.72 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKID 367 +C++F G+C+ G CK SHD + EK++ Sbjct: 180 ICQYFLQGECKFGTSCKRSHDFSNSENLEKLE 211
>SLT11_CRYNE (Q5KND3) Pre-mRNA-splicing factor SLT11| Length = 326 Score = 33.1 bits (74), Expect = 0.72 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEK------IDIYSDKRD 388 +C FF G+C++G +C F H++ + + +K +D Y + D Sbjct: 160 ICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRND 204
>CWC24_CANAL (Q5ACW2) Pre-mRNA-splicing factor CWC24| Length = 216 Score = 33.1 bits (74), Expect = 0.72 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Frame = +2 Query: 278 EFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVIASKN 457 +F ++G C G CKF H + R +KI I D G +++ ++E + Sbjct: 106 DFQQIGYCGYGDTCKFLHVRDESR--QKIPIKKDWEIGGQKEVK---EKEDIPFKCVLCK 160 Query: 458 ADYQQNKPTD---IVCKH-FLDAVEKKQYGWFWVC 550 +DY+ T+ I CK FLD + K+ G ++C Sbjct: 161 SDYKSPIKTECGHIFCKACFLDRYKAKKKGTCFIC 195
>YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III| Length = 547 Score = 32.7 bits (73), Expect = 0.94 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +2 Query: 275 CEFFKVGQCQKGFKCKFSHDLNVQR 349 C+FF+ G C G C FSH L +R Sbjct: 47 CKFFRNGTCTAGENCPFSHSLETER 71
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 32.3 bits (72), Expect = 1.2 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +2 Query: 320 KFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLE 436 K + +L +++K E++++ E + +DDW++ET+E Sbjct: 762 KMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIE 800
>IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) Length = 803 Score = 32.0 bits (71), Expect = 1.6 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +2 Query: 320 KFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLE 436 K + +L +++K E++++ E + +DDW++ET+E Sbjct: 751 KMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIE 789
>IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) Length = 797 Score = 32.0 bits (71), Expect = 1.6 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +2 Query: 320 KFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLE 436 K + +L +++K E++++ E + +DDW++ET+E Sbjct: 745 KMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIE 783
>CWC2_SCHPO (P87126) Pre-mRNA-splicing factor cwc2 (Complexed with cdc5 protein| 2) (Pre-mRNA-processing protein 3) (Cell cycle control protein cwf2) Length = 388 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = +2 Query: 257 DPKSILCEFFKVGQCQKGFKCKFSHDL--NVQRKGEKIDIYSDKRDGEEEDTM 409 +P S C +F G C +G KC++ H L + +D + ++ + D M Sbjct: 111 NPGSFFCLYFARGMCSEGSKCEYLHRLPKDTDFFNANVDCFGREKHADYRDDM 163
>ZFNL6_ARATH (Q9STM4) Putative zinc finger CCCH type domain-containing protein| ZFN-like 6 Length = 448 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +2 Query: 254 VDPKSILCEFF-KVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEED 403 V P + C F+ + G C+ G CKF+H L K I D + E+ED Sbjct: 109 VRPGAEDCSFYMRTGSCKFGSSCKFNHPL-----ARKFQIARDNKVREKED 154
>CTH2_YEAST (P47977) Zinc finger protein CTH2 (YTIS11 protein)| Length = 285 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Frame = +2 Query: 218 KVAVSQPKVPVGVD--PKSI----LCEFFKV-GQCQKGFKCKFSHDL 337 K + +QPKV V PK + LCE F + G C G KC+F+H L Sbjct: 150 KESSAQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGL 196
>CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2| Length = 382 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 260 PKSILCEFFKVGQCQKGFKCKFSHDLNV 343 P S C +F G C +G KC+F H L V Sbjct: 124 PGSYFCLYFARGLCTQGHKCEFLHRLPV 151
>CWC2_ASPFU (Q4WU07) Pre-mRNA-splicing factor cwc2| Length = 414 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 9/52 (17%) Frame = +2 Query: 260 PKSILCEFFKVGQCQKGFKCKFSHDL---------NVQRKGEKIDIYSDKRD 388 P S C FF G C KG +C++ H L NV G D +SD RD Sbjct: 130 PGSYFCLFFARGVCPKGHECEYLHRLPTLHDLFNPNVDCFGR--DKFSDYRD 179
>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)| (DEAH box protein 57) Length = 1388 Score = 30.8 bits (68), Expect = 3.6 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +2 Query: 275 CEFFKVGQCQKGFKCKFSHDL 337 C+F+ G C+ G KCKF H++ Sbjct: 305 CKFYLKGNCKFGSKCKFKHEV 325
>RPC7_MOUSE (Q6NXY9) DNA-directed RNA polymerase III 32 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III C32 subunit) Length = 223 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +2 Query: 326 SHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEK 439 S + N +++G K D+ DGEE+ +D+D+E E+ Sbjct: 158 SDEENEEKEGSKEKDKDDEEDGEEDAEQEDYDEEEQEE 195
>CWC24_USTMA (Q4P400) Pre-mRNA-splicing factor CWC24| Length = 355 Score = 30.4 bits (67), Expect = 4.7 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%) Frame = +2 Query: 254 VDPKSILCEFFK-VGQCQKGFKCKFSHDLNVQRKGEKIDIYSDK---------RDGEEED 403 +D + +C+ +K G C G CKF HD + G ++D+ + D E+ D Sbjct: 196 IDYQPDVCKDYKETGYCGFGDTCKFLHDRSDYLAGWQLDVLPNSSSRTRENMLSDPEDSD 255 Query: 404 TMDD 415 T DD Sbjct: 256 TEDD 259
>CRTC3_HUMAN (Q96L12) Calreticulin-3 precursor (Calreticulin-2)| Length = 384 Score = 30.4 bits (67), Expect = 4.7 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%) Frame = +2 Query: 287 KVGQCQKGFKCK---FSHDLN-VQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVIA-S 451 K + +K +CK F+H + R D+ D + E DW+ +L+K + + Sbjct: 153 KYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQSIESGSIEYDWNLTSLKKETSPA 212 Query: 452 KNADYQQNKPTDIVC--KHFLDAVEKKQYGW 538 ++ D++Q K KHFLDA KQ W Sbjct: 213 ESKDWEQTKDNKAQDWEKHFLDASTSKQSDW 243
>DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)| (DEAH box protein 57) Length = 1386 Score = 30.4 bits (67), Expect = 4.7 Identities = 9/22 (40%), Positives = 16/22 (72%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDL 337 +C+F+ G C+ G KC+F H++ Sbjct: 304 ICKFYLKGNCKFGSKCRFKHEV 325
>CDC68_KLULA (Q00976) Cell division control protein 68| Length = 1033 Score = 30.4 bits (67), Expect = 4.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 377 DKRDGEEEDTMDDWDQETLEKVIASKNADYQQ 472 D DG E+D DDWD + A +N++Y++ Sbjct: 1002 DFADGSEDDEGDDWDDLEKKAAKADRNSNYKE 1033
>PRP5_CRYNE (Q5KME7) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 1072 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +2 Query: 344 QRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVIASKNAD 463 + K EK+DI + EEED +D + ++ +++V+ AD Sbjct: 264 EEKEEKMDIDKKAEEDEEEDPLDAFMRDNVQQVVEVNKAD 303
>CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2| Length = 580 Score = 30.0 bits (66), Expect = 6.1 Identities = 22/86 (25%), Positives = 34/86 (39%) Frame = +2 Query: 266 SILCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDGEEEDTMDDWDQETLEKVI 445 S C FF G C KG C++ H L D+YS D D D+ + + Sbjct: 107 SYFCLFFARGVCPKGQDCEYLHRLPTLH-----DLYSPNVDCFGRDRFSDYRDD-----M 156 Query: 446 ASKNADYQQNKPTDIVCKHFLDAVEK 523 + +QN+ + H D +E+ Sbjct: 157 GGVGSFMRQNRTVYVGRIHVTDDIEE 182
>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (Clipper homolog) (Clipper/CPSF 30K) Length = 211 Score = 30.0 bits (66), Expect = 6.1 Identities = 10/32 (31%), Positives = 22/32 (68%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLNVQRKGE 358 K+++C+ + G C+KG +C+F H+ ++ + E Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE 95
>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (NS1 effector domain-binding protein 1) (Neb-1) (No arches homolog) Length = 269 Score = 30.0 bits (66), Expect = 6.1 Identities = 10/32 (31%), Positives = 22/32 (68%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSHDLNVQRKGE 358 K+++C+ + G C+KG +C+F H+ ++ + E Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE 95
>TRM1_HUMAN (Q9NXH9) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 659 Score = 29.6 bits (65), Expect = 8.0 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 263 KSILCEFFKVGQCQKGFKCKFSH 331 K+ C+ FK G CQ+G +C +SH Sbjct: 602 KTFPCKRFKEGTCQRGDQCCYSH 624
>PRP12_MOUSE (Q8BZ20) Poly [ADP-ribose] polymerase 12 (EC 2.4.2.30) (PARP-12)| (Zinc finger CCCH type domain-containing protein 1) Length = 711 Score = 29.6 bits (65), Expect = 8.0 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = +2 Query: 272 LCEFFKVGQCQKGFKCKFSHDLNVQRKGEKID 367 +C++F G+C+ G CK SH+ E+++ Sbjct: 189 ICQYFLQGECKFGTSCKRSHEFTNSESLEQLE 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,298,195 Number of Sequences: 219361 Number of extensions: 1450223 Number of successful extensions: 5121 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 4794 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5111 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
