ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7g04 |
|---|---|
| Clone Library Name | barley_pub |
>VPS36_BRARE (Q7ZVK4) Vacuolar protein sorting protein 36| Length = 382 Score = 155 bits (393), Expect = 7e-38 Identities = 92/200 (46%), Positives = 130/200 (65%), Gaps = 3/200 (1%) Frame = +2 Query: 23 QNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDMQDLLLSVG 202 +N+ +AF+DL+ LM KAKEM+EL+ + K+ DE + K LLS+G Sbjct: 172 KNISEAFEDLSKLMEKAKEMVELSRSIANKI--KDKQGDITEDETIRFKS----YLLSMG 225 Query: 203 IVSPVTKET--AGALYHQQLSRQLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPE 376 I +PVT+ET +G YH QL++QL D ++ P+E GGMMAL +VYCL NRARG EL+SPE Sbjct: 226 IANPVTRETHGSGTQYHIQLAKQLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPE 285 Query: 377 DLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKPDALLKG-ISPS 553 DL+ AC ++E +P+ LR FDSGV V+Q ++HS++E+ A S+L D KG ++ Sbjct: 286 DLVNACKIFESLKLPLRLRVFDSGVMVVQLQSHSEEEMIA--SALDNVSD---KGSLTAE 340 Query: 554 DAAFTLGIAPALAKEHLLNA 613 + A LG++ LAKE LL A Sbjct: 341 EFAKLLGLSVLLAKERLLLA 360
>VPS36_MOUSE (Q91XD6) Vacuolar protein sorting protein 36| Length = 386 Score = 149 bits (375), Expect = 8e-36 Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 2/199 (1%) Frame = +2 Query: 23 QNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDMQDLLLSVG 202 +N+ +AF+DL+ LM KAKEM+EL++ + K+ DE + K LLS+G Sbjct: 172 KNISEAFEDLSKLMIKAKEMVELSKSIANKI--KEKQGDVTEDETIRFKS----YLLSMG 225 Query: 203 IVSPVTKET--AGALYHQQLSRQLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPE 376 I +PVT+ET +G YH QL++QLA ++ P+E GG+M+L +VYCL NRARG EL+SPE Sbjct: 226 IANPVTRETYGSGTQYHMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPE 285 Query: 377 DLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSD 556 DL+ AC + E +P+ LR FDSGV VI+ +TH ++E+ A + +L + + Sbjct: 286 DLVNACKMLEALKLPIRLRVFDSGVMVIELQTHKEEEMVASALETVSERGSL----TSEE 341 Query: 557 AAFTLGIAPALAKEHLLNA 613 A +G++ LAKE LL A Sbjct: 342 FAKLVGMSVLLAKERLLLA 360
>VPS36_HUMAN (Q86VN1) Vacuolar protein sorting protein 36 (ELL-associated| protein of 45 kDa) Length = 386 Score = 148 bits (374), Expect = 1e-35 Identities = 84/199 (42%), Positives = 126/199 (63%), Gaps = 2/199 (1%) Frame = +2 Query: 23 QNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDMQDLLLSVG 202 +N+ +AF+DL+ LM KAKEM+EL++ + K+ DE + K LLS+G Sbjct: 172 KNISEAFEDLSKLMIKAKEMVELSKSIANKI--KDKQGDITEDETIRFKS----YLLSMG 225 Query: 203 IVSPVTKET--AGALYHQQLSRQLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPE 376 I +PVT+ET +G YH QL++QLA +++P+E GG+M+L +VYCL NRARG EL+SPE Sbjct: 226 IANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPE 285 Query: 377 DLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSD 556 DL+ AC + E +P+ LR FDSGV VI+ ++H ++E+ A + +L + + Sbjct: 286 DLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSL----TSEE 341 Query: 557 AAFTLGIAPALAKEHLLNA 613 A +G++ LAKE LL A Sbjct: 342 FAKLVGMSVLLAKERLLLA 360
>VPS36_XENLA (Q6DDF4) Vacuolar protein sorting protein 36| Length = 388 Score = 148 bits (373), Expect = 1e-35 Identities = 84/199 (42%), Positives = 126/199 (63%), Gaps = 2/199 (1%) Frame = +2 Query: 23 QNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDMQDLLLSVG 202 +N+ +AF+DL+ LM KAKEM+EL++ + K+ DE + K LLS+G Sbjct: 174 KNISEAFEDLSKLMEKAKEMVELSKSIATKI--KDKQGDISEDETIRFKS----YLLSMG 227 Query: 203 IVSPVTKET--AGALYHQQLSRQLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPE 376 I +PVT+ET +G YH QL++QLA ++ P+E GG+M+L +VYCL NRARG EL+SPE Sbjct: 228 IANPVTRETHGSGTHYHMQLAKQLATMLQAPLEERGGIMSLTEVYCLVNRARGMELLSPE 287 Query: 377 DLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSD 556 DL+ AC + E +P+ LR FDSGV VI+ ++H+++E+ A + +L + + Sbjct: 288 DLVNACKMLESLKLPIRLRVFDSGVMVIEHQSHNEEEMVASALETVSEKGSL----TSEE 343 Query: 557 AAFTLGIAPALAKEHLLNA 613 A +G++ LAKE LL A Sbjct: 344 FAKIVGMSVLLAKERLLLA 362
>VPS36_RAT (P0C0A2) Vacuolar protein sorting protein 36 (ELL-associated| protein of 45 kDa) Length = 386 Score = 147 bits (371), Expect = 2e-35 Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 2/199 (1%) Frame = +2 Query: 23 QNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDMQDLLLSVG 202 +N+ +AF+DL+ LM +AKEM+EL++ + K+ DE + K LLS+G Sbjct: 172 KNISEAFEDLSKLMIQAKEMVELSKSIANKI--KEKQGDVTEDETIRFKS----YLLSMG 225 Query: 203 IVSPVTKET--AGALYHQQLSRQLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPE 376 I +PVT+ET +G YH QL++QLA ++ P+E GG+M+L +VYCL NRARG EL+SPE Sbjct: 226 IANPVTRETYGSGTQYHMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPE 285 Query: 377 DLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSD 556 DL+ AC + E +PV LR FDSGV VI+ +TH ++E+ A + +L + + Sbjct: 286 DLVNACKMLEGLKLPVRLRVFDSGVMVIELQTHKEEEMVASALETVSERGSL----TSEE 341 Query: 557 AAFTLGIAPALAKEHLLNA 613 A +G++ LAKE LL A Sbjct: 342 FAKLVGMSVLLAKERLLLA 360
>VPS36_YEAST (Q06696) Vacuolar protein sorting protein 36| Length = 566 Score = 37.7 bits (86), Expect = 0.027 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 7/131 (5%) Frame = +2 Query: 35 DAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDMQDLLLSVGIVSP 214 +A DLN LMS A + L + +T DE ++ + LL + Sbjct: 345 NALTDLNKLMSLATSIERLYKNSN---ITMKTKTLNLQDESTVNEPKTRRPLLILDREKF 401 Query: 215 VTKETAGALYHQQLSRQLADFVRIPVERAGG-----MMALVDVYCLFNRAR--GTELISP 373 + KE L+ +++R++ +F + ++ LVD+Y ++N++ GT LISP Sbjct: 402 LNKE----LFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISP 457 Query: 374 EDLLQACSLWE 406 ++ +AC +E Sbjct: 458 MEMREACERFE 468
>HIS6_PROM9 (Q31CA5) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 256 Score = 32.7 bits (73), Expect = 0.87 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +2 Query: 242 YHQQLSRQLADFVRIPVERAGGMMALVDVYCLFNRARGT 358 Y L+ +A+ V IPV +GG L D+Y +FN R + Sbjct: 185 YDLHLTESVANIVNIPVIASGGAGCLEDIYDVFNEGRAS 223
>DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC)| Length = 4092 Score = 32.0 bits (71), Expect = 1.5 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +2 Query: 5 HEESAG--QNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDM 178 +E+SAG + D QD+N L+ + E + QKL DE + +++ Sbjct: 388 YEKSAGMIEEWDDIVQDVNLLIREDLRKRAPQELLIQKLTFTSASVKATLDEILSTRKRF 447 Query: 179 QDLLLSVGIVSPVTKETAGALYHQQLSRQLADFVRI 286 L ++ +SP T YH+++ R F +I Sbjct: 448 FSLAETIKSISPST-------YHEEIQRLYHPFEQI 476
>HSLU_BACSU (P39778) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 467 Score = 32.0 bits (71), Expect = 1.5 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 8/158 (5%) Frame = +2 Query: 11 ESAGQNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTXXXXXXXXXDEEMGSKQDMQDLL 190 E G N+QDA L+ LM K K+ ++ + +K+LT +E+G + + Sbjct: 216 EQMGMNMQDA---LSGLMPKKKKRRKMTVREARKVLTNEEASKLIDMDEVGQEAVQRAEE 272 Query: 191 LSVGIVSPVTK--ETAGALYHQQLSRQLADFVRIPVERAGGMM----ALVDVYCLFNRAR 352 + + + K + GA +SR+ +P+ ++ ++ + LF A Sbjct: 273 SGIIFIDEIDKIAKNGGASSSADVSREGVQRDILPIVEGSTVVTKYGSVKTDHVLFIAAG 332 Query: 353 GTELISPEDLLQACSLWEKFDVPVMLRKF--DSGVKVI 460 + P DL+ L +F + V L K D V+++ Sbjct: 333 AFHMAKPSDLIP--ELQGRFPIRVELNKLTVDDFVRIL 368
>ARP6_EMENI (Q5AXH1) Actin-like protein arp6| Length = 479 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = -1 Query: 269 PAVVKAADGTKHQQFPLSRETRCLRSIANPACLA*NPSLRHWNSIEKM 126 PA+ K AD +++ RC+ +A P L PSL WN I+ + Sbjct: 142 PALQKNADEIIMEEWGFGGYLRCVVGMAKPFALNTGPSLNAWNEIQSL 189
>CALT_BOVIN (P06833) Caltrin precursor (Calcium transport inhibitor)| (Seminalplasmin) (SPLN) Length = 80 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = -1 Query: 299 LSQLVFSQSQPAVVKAADGTKHQQFPLSRETRCLRSIANPACL 171 L +LV S+ QP+ KA+ KH +F LSR + +ANP L Sbjct: 22 LGELVDSKPQPSDEKASPD-KHHRFSLSRYAKLANRLANPKLL 63
>CF1A_DROME (P16241) POU-domain protein CF1A (Chorion factor 1A) (CF1-A)| (Ventral veins lacking protein) (Drifter protein) Length = 427 Score = 30.8 bits (68), Expect = 3.3 Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Frame = -1 Query: 536 SEEHPAFARVMRFLQIPHHHYASWSG--------SPSLHYQISGALLGHQISPKGSKLAK 381 S A A M+++Q HHH+A+ + SPS + Q +G LG GS L Sbjct: 27 SPRSAADAGEMKYMQHHHHHHAAAAAAAHHQLPSSPSPNGQGNGGGLG---LGSGSGLGS 83 Query: 380 DPLVRSTLFP*RG*RDSRHRLVPSYHLLSQLVFSQSQPAVVKAADGTKHQQFPLSRETRC 201 S L P D + ++HL + AV AAD K + LS++TR Sbjct: 84 ----WSALHP-----DPWMQTHHTHHL-------PAAAAVASAADTVKQEMSHLSQQTRI 127 Query: 200 LRSIANPACLA*NPSLRHW 144 + +A+P P H+ Sbjct: 128 QQGMASPHAAWHAPHAGHY 146
>SYNC_CAEEL (Q19722) Asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 545 Score = 30.0 bits (66), Expect = 5.6 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +2 Query: 275 FVRIPVERAGGMMALVDVYCLFNRARGTELISPEDLLQACS--LWEKFDVPVMLRKFDSG 448 F R+P + A + DV G + + ED+ +A + + VP++L +F G Sbjct: 385 FKRMPYKEAIEWLQKNDV----RNEMGEKFVYGEDIAEAAERRMTDTIGVPILLNRFPHG 440 Query: 449 VKVIQTKTHSDDEVFARISSLAQKPDALLKGI 544 +K +DD + L + D L+ G+ Sbjct: 441 IKAFYMPRCADD------NELTESVDLLMPGV 466
>DYF8_CAEEL (Q09276) Protein dyf-8 (Abnormal dye filling protein 8)| Length = 446 Score = 30.0 bits (66), Expect = 5.6 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Frame = +2 Query: 302 GGMMALVDVYCLFNR----ARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQTK 469 G L V+CL+ R R +++ + +++ + K V ++ R DSG + + Sbjct: 127 GKTTRLNHVFCLYTRNVKTIRFSDVSNGHEVIASTGGKPKPKVEMLFRSTDSGKTLQAAR 186 Query: 470 THSDDEVFARISSLAQKPDALLKGISPSDAAFT 568 + E F +S PD+ GISP + F+ Sbjct: 187 ENEFVEFFIALS-----PDSAYHGISPKECTFS 214
>PURA_GLUOX (Q5FQZ9) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 30.0 bits (66), Expect = 5.6 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Frame = +2 Query: 365 ISPEDLLQACSLWEKFDVPVML--RKFDSGVKVIQTKTHSDDEVFARISSLAQKPDALLK 538 I+P L +C +W++ D R G + + F S+ A Sbjct: 192 ITPRLLPFSCQVWDRLDEARRAGRRILFEGAQAVMLDVDHGTYPFVTSSNTVAAVAASGS 251 Query: 539 GISPSDAAFTLGIAPA 586 G+SPS F LGIA A Sbjct: 252 GVSPSSVGFVLGIAKA 267
>PGMP_BRANA (Q9SMM0) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 629 Score = 29.6 bits (65), Expect = 7.3 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -3 Query: 486 SSSLCVLVWITFTPLSNFRSITGTSNFSQREQACKRSSGEINSVPLARLKRQ*TSTSAI 310 SS L + + P S RS+TG S+ S S EI S+P ++ Q T TS + Sbjct: 35 SSLLSSGIHLRAKPNSRLRSVTGASSSSSGPIIAGSESIEIKSLPTKPIEGQKTGTSGL 93
>HIS6_PYRAE (Q8ZY16) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 253 Score = 29.6 bits (65), Expect = 7.3 Identities = 14/46 (30%), Positives = 29/46 (63%) Frame = +2 Query: 170 QDMQDLLLSVGIVSPVTKETAGALYHQQLSRQLADFVRIPVERAGG 307 +++++L +++ + ++ G Y +L R++AD VRIPV +GG Sbjct: 161 KEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGG 206
>ADIA_ECOLI (P28629) Biodegradative arginine decarboxylase (EC 4.1.1.19) (ADC)| Length = 755 Score = 29.3 bits (64), Expect = 9.6 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Frame = -2 Query: 85 HHFLGFAH--EGVEILEGILQVL 23 HHF GF H EG EI++GI V+ Sbjct: 729 HHFPGFEHETEGTEIIDGIYHVM 751 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,668,708 Number of Sequences: 219361 Number of extensions: 1855879 Number of successful extensions: 5647 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5633 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
