No.
Definition
Score (bits)
E Value
1 dbj|AK073388.1| Oryza sativa (japonica cultivar-group) cDNA clon...
731
0.0
2 dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic D...
218
2e-53
3 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
218
2e-53
4 dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic D...
218
2e-53
5 dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic D...
218
2e-53
6 ref|NM_120574.3| Arabidopsis thaliana transporter AT5G04920 mRNA...
92
3e-15
7 gb|AY096570.1| Arabidopsis thaliana unknown protein (At5g04920) ...
92
3e-15
8 gb|AY072089.1| Arabidopsis thaliana unknown protein (At5g04920) ...
92
3e-15
9 dbj|AB005245.2| Arabidopsis thaliana genomic DNA, chromosome 5, ...
52
0.002
10 gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complet...
44
0.54
11 gb|AC097499.3| Homo sapiens BAC clone RP11-333J2 from 2, complet...
44
0.54
12 gb|AC006458.2| Homo sapiens BAC clone GS1-228E12 from 7, complet...
42
2.1
13 dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
42
2.1
14 gb|AC011742.3| Homo sapiens BAC clone RP11-214J9 from 2, complet...
42
2.1
15 emb|AL772231.8| Mouse DNA sequence from clone RP23-398O7 on chro...
42
2.1
16 ref|XM_631064.1| Dictyostelium discoideum hypothetical protein (...
40
8.4
17 gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome...
40
8.4
18 gb|AC093536.4| Homo sapiens chromosome 16 clone RP11-744D14, com...
40
8.4
19 gb|AC011620.8|ATAC011620 Arabidopsis thaliana chromosome III BAC...
40
8.4
20 gb|AC135197.1| Rattus norvegicus BAC CH230-348O5 (Children's Hos...
40
8.4
21 dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
40
8.4
22 gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...
40
8.4
23 gb|AC134864.5| Mus musculus BAC clone RP24-132O18 from chromosom...
40
8.4
24 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.4
25 gb|AC090806.12| Homo sapiens chromosome 8, clone RP11-94A24, com...
40
8.4
26 gb|AC108136.14| Homo sapiens chromosome 8, clone RP11-96B2, comp...
40
8.4
27 ref|NM_209662.1| Eremothecium gossypii ADR213Cp (ADR213C), mRNA
40
8.4
28 gb|AC152983.2| Mus musculus 10 BAC RP23-17L11 (Roswell Park Canc...
40
8.4
29 gb|AC107856.7| Mus musculus chromosome 14, clone RP23-10E23, com...
40
8.4
30 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
40
8.4
31 emb|CT030682.10| Mouse DNA sequence from clone RP23-263O11 on ch...
40
8.4
32 gb|AC004057.1|AC004057 Homo sapiens chromosome 4 clone B240N9 ma...
40
8.4
33 dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
8.4
>dbj|AP003570.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0432B10
Length = 131918
Score = 218 bits (110), Expect = 2e-53
Identities = 176/198 (88%)
Strand = Plus / Minus
Query: 64 gagcaaagccaaggaaatgatggaattggcagagaaaatgaggcaaaagctattgacgaa 123
||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 76759 gagcaaagctaaggaaatgatggagttagcggagaaaatgaggcaaaagctattgacgaa 76700
Query: 124 ctcatcttctcaatcgaattccaatgacgaagagatgggttctaagcaagacatgcagga 183
|||||| | ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 76699 ctcatcagcccaatccaattccaatgatgaagagatgggatctaagcaagacatgcagga 76640
Query: 184 tttgctattgagcgtaggcatcgtgtctcccgtgacaaaggaaactgctggtgctttgta 243
|| ||||||||| || || |||||||| || ||||| || ||||| ||||||||| ||||
Sbjct: 76639 ttggctattgagtgttggaatcgtgtcccctgtgacgaaagaaaccgctggtgctctgta 76580
Query: 244 ccatcagcagctttcacg 261
||| |||||||| |||||
Sbjct: 76579 ccaccagcagctgtcacg 76562
Score = 161 bits (81), Expect = 3e-36
Identities = 117/129 (90%)
Strand = Plus / Minus
Query: 486 aggtatttgcaagaatctcatcactcgcgcaaaagccggatgctcttctgaaaggaataa 545
|||||||||| |||||||||||||| || |||||| |||||| |||| ||| |||||||
Sbjct: 75375 aggtatttgcgagaatctcatcacttgcacaaaaggaggatgcccttcagaagggaataa 75316
Query: 546 gccccagcgacgctgcatttacactggggattgcaccagctttagcaaaggagcatcttc 605
|||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 75315 gccccagcgatgctgcatttacacttgggattgcacctgctttagcgaaggagcatcttc 75256
Query: 606 taaatgcag 614
|||||||||
Sbjct: 75255 taaatgcag 75247
Score = 121 bits (61), Expect = 3e-24
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 418 cccagtaatgctccggaaatttgatagtggagtgaaggtgatccagaccaagacgcatag 477
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 75700 cccagtcatgctcaggaaatttgacagtggagtgaaggtgatccagaccaagacgcatag 75641
Query: 478 tgatgatgaggta 490
|||||||||||||
Sbjct: 75640 tgatgatgaggta 75628
Score = 93.7 bits (47), Expect = 6e-16
Identities = 53/55 (96%)
Strand = Plus / Minus
Query: 10 ggagagcgcggggcagaacttgcaggatgccttccaggatctcaacgccctcatg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 77048 ggagagcgcggggcagaatctgcaggatgccttccaggatctcaacgccctcatg 76994
Score = 89.7 bits (45), Expect = 1e-14
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 358 agagttgatctcaccagaggatcttttgcaagcttgctccctttgggagaaatttga 414
||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 75869 agagttgatctcaccagaggatcttctgcaagcctgttccctttgggagaaatttga 75813
Score = 77.8 bits (39), Expect = 4e-11
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 267 tggctgactttgtgagaataccagttgagagagcaggtggtatgatggcactagtcgatg 326
||||||||| | | |||| |||| | |||| |||||||||||||||||||||||| ||||
Sbjct: 76044 tggctgactatattagaacaccactagagaaagcaggtggtatgatggcactagttgatg 75985
Query: 327 tctactgtctcttcaaccg 345
|||| ||||||| ||||||
Sbjct: 75984 tctattgtctctacaaccg 75966
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 218 bits (110), Expect = 2e-53
Identities = 176/198 (88%)
Strand = Plus / Minus
Query: 64 gagcaaagccaaggaaatgatggaattggcagagaaaatgaggcaaaagctattgacgaa 123
||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 34579465 gagcaaagctaaggaaatgatggagttagcggagaaaatgaggcaaaagctattgacgaa 34579406
Query: 124 ctcatcttctcaatcgaattccaatgacgaagagatgggttctaagcaagacatgcagga 183
|||||| | ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 34579405 ctcatcagcccaatccaattccaatgatgaagagatgggatctaagcaagacatgcagga 34579346
Query: 184 tttgctattgagcgtaggcatcgtgtctcccgtgacaaaggaaactgctggtgctttgta 243
|| ||||||||| || || |||||||| || ||||| || ||||| ||||||||| ||||
Sbjct: 34579345 ttggctattgagtgttggaatcgtgtcccctgtgacgaaagaaaccgctggtgctctgta 34579286
Query: 244 ccatcagcagctttcacg 261
||| |||||||| |||||
Sbjct: 34579285 ccaccagcagctgtcacg 34579268
Score = 161 bits (81), Expect = 3e-36
Identities = 117/129 (90%)
Strand = Plus / Minus
Query: 486 aggtatttgcaagaatctcatcactcgcgcaaaagccggatgctcttctgaaaggaataa 545
|||||||||| |||||||||||||| || |||||| |||||| |||| ||| |||||||
Sbjct: 34578081 aggtatttgcgagaatctcatcacttgcacaaaaggaggatgcccttcagaagggaataa 34578022
Query: 546 gccccagcgacgctgcatttacactggggattgcaccagctttagcaaaggagcatcttc 605
|||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 34578021 gccccagcgatgctgcatttacacttgggattgcacctgctttagcgaaggagcatcttc 34577962
Query: 606 taaatgcag 614
|||||||||
Sbjct: 34577961 taaatgcag 34577953
Score = 121 bits (61), Expect = 3e-24
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 418 cccagtaatgctccggaaatttgatagtggagtgaaggtgatccagaccaagacgcatag 477
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 34578406 cccagtcatgctcaggaaatttgacagtggagtgaaggtgatccagaccaagacgcatag 34578347
Query: 478 tgatgatgaggta 490
|||||||||||||
Sbjct: 34578346 tgatgatgaggta 34578334
Score = 93.7 bits (47), Expect = 6e-16
Identities = 53/55 (96%)
Strand = Plus / Minus
Query: 10 ggagagcgcggggcagaacttgcaggatgccttccaggatctcaacgccctcatg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 34579754 ggagagcgcggggcagaatctgcaggatgccttccaggatctcaacgccctcatg 34579700
Score = 89.7 bits (45), Expect = 1e-14
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 358 agagttgatctcaccagaggatcttttgcaagcttgctccctttgggagaaatttga 414
||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 34578575 agagttgatctcaccagaggatcttctgcaagcctgttccctttgggagaaatttga 34578519
Score = 77.8 bits (39), Expect = 4e-11
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 267 tggctgactttgtgagaataccagttgagagagcaggtggtatgatggcactagtcgatg 326
||||||||| | | |||| |||| | |||| |||||||||||||||||||||||| ||||
Sbjct: 34578750 tggctgactatattagaacaccactagagaaagcaggtggtatgatggcactagttgatg 34578691
Query: 327 tctactgtctcttcaaccg 345
|||| ||||||| ||||||
Sbjct: 34578690 tctattgtctctacaaccg 34578672
>dbj|AP004331.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0085D07
Length = 172483
Score = 218 bits (110), Expect = 2e-53
Identities = 176/198 (88%)
Strand = Plus / Minus
Query: 64 gagcaaagccaaggaaatgatggaattggcagagaaaatgaggcaaaagctattgacgaa 123
||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 31482 gagcaaagctaaggaaatgatggagttagcggagaaaatgaggcaaaagctattgacgaa 31423
Query: 124 ctcatcttctcaatcgaattccaatgacgaagagatgggttctaagcaagacatgcagga 183
|||||| | ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 31422 ctcatcagcccaatccaattccaatgatgaagagatgggatctaagcaagacatgcagga 31363
Query: 184 tttgctattgagcgtaggcatcgtgtctcccgtgacaaaggaaactgctggtgctttgta 243
|| ||||||||| || || |||||||| || ||||| || ||||| ||||||||| ||||
Sbjct: 31362 ttggctattgagtgttggaatcgtgtcccctgtgacgaaagaaaccgctggtgctctgta 31303
Query: 244 ccatcagcagctttcacg 261
||| |||||||| |||||
Sbjct: 31302 ccaccagcagctgtcacg 31285
Score = 161 bits (81), Expect = 3e-36
Identities = 117/129 (90%)
Strand = Plus / Minus
Query: 486 aggtatttgcaagaatctcatcactcgcgcaaaagccggatgctcttctgaaaggaataa 545
|||||||||| |||||||||||||| || |||||| |||||| |||| ||| |||||||
Sbjct: 30098 aggtatttgcgagaatctcatcacttgcacaaaaggaggatgcccttcagaagggaataa 30039
Query: 546 gccccagcgacgctgcatttacactggggattgcaccagctttagcaaaggagcatcttc 605
|||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 30038 gccccagcgatgctgcatttacacttgggattgcacctgctttagcgaaggagcatcttc 29979
Query: 606 taaatgcag 614
|||||||||
Sbjct: 29978 taaatgcag 29970
Score = 121 bits (61), Expect = 3e-24
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 418 cccagtaatgctccggaaatttgatagtggagtgaaggtgatccagaccaagacgcatag 477
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 30423 cccagtcatgctcaggaaatttgacagtggagtgaaggtgatccagaccaagacgcatag 30364
Query: 478 tgatgatgaggta 490
|||||||||||||
Sbjct: 30363 tgatgatgaggta 30351
Score = 93.7 bits (47), Expect = 6e-16
Identities = 53/55 (96%)
Strand = Plus / Minus
Query: 10 ggagagcgcggggcagaacttgcaggatgccttccaggatctcaacgccctcatg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 31771 ggagagcgcggggcagaatctgcaggatgccttccaggatctcaacgccctcatg 31717
Score = 89.7 bits (45), Expect = 1e-14
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 358 agagttgatctcaccagaggatcttttgcaagcttgctccctttgggagaaatttga 414
||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 30592 agagttgatctcaccagaggatcttctgcaagcctgttccctttgggagaaatttga 30536
Score = 77.8 bits (39), Expect = 4e-11
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 267 tggctgactttgtgagaataccagttgagagagcaggtggtatgatggcactagtcgatg 326
||||||||| | | |||| |||| | |||| |||||||||||||||||||||||| ||||
Sbjct: 30767 tggctgactatattagaacaccactagagaaagcaggtggtatgatggcactagttgatg 30708
Query: 327 tctactgtctcttcaaccg 345
|||| ||||||| ||||||
Sbjct: 30707 tctattgtctctacaaccg 30689
>dbj|AP003247.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0425G02
Length = 155432
Score = 218 bits (110), Expect = 2e-53
Identities = 176/198 (88%)
Strand = Plus / Minus
Query: 64 gagcaaagccaaggaaatgatggaattggcagagaaaatgaggcaaaagctattgacgaa 123
||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 155184 gagcaaagctaaggaaatgatggagttagcggagaaaatgaggcaaaagctattgacgaa 155125
Query: 124 ctcatcttctcaatcgaattccaatgacgaagagatgggttctaagcaagacatgcagga 183
|||||| | ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 155124 ctcatcagcccaatccaattccaatgatgaagagatgggatctaagcaagacatgcagga 155065
Query: 184 tttgctattgagcgtaggcatcgtgtctcccgtgacaaaggaaactgctggtgctttgta 243
|| ||||||||| || || |||||||| || ||||| || ||||| ||||||||| ||||
Sbjct: 155064 ttggctattgagtgttggaatcgtgtcccctgtgacgaaagaaaccgctggtgctctgta 155005
Query: 244 ccatcagcagctttcacg 261
||| |||||||| |||||
Sbjct: 155004 ccaccagcagctgtcacg 154987
Score = 161 bits (81), Expect = 3e-36
Identities = 117/129 (90%)
Strand = Plus / Minus
Query: 486 aggtatttgcaagaatctcatcactcgcgcaaaagccggatgctcttctgaaaggaataa 545
|||||||||| |||||||||||||| || |||||| |||||| |||| ||| |||||||
Sbjct: 153800 aggtatttgcgagaatctcatcacttgcacaaaaggaggatgcccttcagaagggaataa 153741
Query: 546 gccccagcgacgctgcatttacactggggattgcaccagctttagcaaaggagcatcttc 605
|||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 153740 gccccagcgatgctgcatttacacttgggattgcacctgctttagcgaaggagcatcttc 153681
Query: 606 taaatgcag 614
|||||||||
Sbjct: 153680 taaatgcag 153672
Score = 121 bits (61), Expect = 3e-24
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 418 cccagtaatgctccggaaatttgatagtggagtgaaggtgatccagaccaagacgcatag 477
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 154125 cccagtcatgctcaggaaatttgacagtggagtgaaggtgatccagaccaagacgcatag 154066
Query: 478 tgatgatgaggta 490
|||||||||||||
Sbjct: 154065 tgatgatgaggta 154053
Score = 89.7 bits (45), Expect = 1e-14
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 358 agagttgatctcaccagaggatcttttgcaagcttgctccctttgggagaaatttga 414
||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 154294 agagttgatctcaccagaggatcttctgcaagcctgttccctttgggagaaatttga 154238
Score = 77.8 bits (39), Expect = 4e-11
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 267 tggctgactttgtgagaataccagttgagagagcaggtggtatgatggcactagtcgatg 326
||||||||| | | |||| |||| | |||| |||||||||||||||||||||||| ||||
Sbjct: 154469 tggctgactatattagaacaccactagagaaagcaggtggtatgatggcactagttgatg 154410
Query: 327 tctactgtctcttcaaccg 345
|||| ||||||| ||||||
Sbjct: 154409 tctattgtctctacaaccg 154391
>dbj|AP003786.2 | Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
sequence
Length = 174667
Score = 40.1 bits (20), Expect = 8.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 394 ctccctttgggagaaatttg 413
||||||||||||||||||||
Sbjct: 164618 ctccctttgggagaaatttg 164599
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,197,148
Number of Sequences: 3902068
Number of extensions: 5197148
Number of successful extensions: 94205
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94039
Number of HSP's gapped (non-prelim): 166
length of query: 614
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 591
effective length of database: 17,143,297,704
effective search space: 10131688943064
effective search space used: 10131688943064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)