>CIR1A_MOUSE (Q8R2N2) Cirhin (Testis-expressed gene 292 protein)|
          Length = 686

 Score = 71.6 bits (174), Expect(2) = 5e-13
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
 Frame = +1

Query: 1   SARGSRGDA-----TIRQVVHLKSKGSRKIIASAVSTNGMLFAYSDCVKPCLFALRHKGG 165
           SA G  GD          ++HLK+KG   II S VS  G   AYS   +  L+ L+++  
Sbjct: 364 SATGKNGDTLPLSKNADHLLHLKTKGPENIICSCVSPCGSWIAYSTASRFFLYRLKYE-R 422

Query: 166 KKFSLDKM-ELPKGIPSSQSMMFTADSSSLLLSCNDGKIYVVDIA--SRKISNIFHPTRK 336
              SL ++ +LP  + S+  ++F+ DS+ LL++ N G +++V ++  S K  + F P   
Sbjct: 423 DNISLQRVSKLPSFLRSALHILFSEDSTKLLVASNQGSLHIVHLSEGSFKHLHTFQP--- 479

Query: 337 IDGAKTSSKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMN 492
                 S   + +  + VS DG W+AA+     V++++L   + H  +P  N
Sbjct: 480 -----QSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYDLHHLKLHCTVPAYN 526



 Score = 21.9 bits (45), Expect(2) = 5e-13
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 503 VTAGGFCPKNNALVITTSRNEVYVF 577
           VTA    P  N LVI  S  +V+ F
Sbjct: 529 VTALAIAPNTNNLVIAHSDQQVFEF 553

>CIR1A_HUMAN (Q969X6) Cirhin|
          Length = 686

 Score = 67.0 bits (162), Expect(2) = 2e-11
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
 Frame = +1

Query: 4   ARGSRGDA-----TIRQVVHLKSKGSRKIIASAVSTNGMLFAYSDCVKPCLFALRHKGGK 168
           A G  GD          ++HLK+KG   II S +S  G   AYS   +  L+ L ++   
Sbjct: 365 ATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDN 424

Query: 169 KFSLDKMELPKGIPSSQSMMFTADSSSLLLSCNDGKIYVVDIASRKISNI--FHPTRKID 342
                  ++P  + S+  ++F+ DS+ L ++ N G +++V ++     ++  F P     
Sbjct: 425 ISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQ---- 480

Query: 343 GAKTSSKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFIPRMN 492
               S   + +  + VS DG W+AA+     V+++N++  + H  +P  N
Sbjct: 481 ----SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYN 526



 Score = 21.2 bits (43), Expect(2) = 2e-11
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 503 VTAGGFCPKNNALVITTSRNEVYVF 577
           VTA    P  N LVI  S  +V+ +
Sbjct: 529 VTAMAIAPNTNNLVIAHSDQQVFEY 553

>WDR50_HUMAN (Q9Y5J1) WD-repeat protein 50|
          Length = 556

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = +1

Query: 229 FTADSSSLLLSCNDGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQW 408
           F++DS  +  S  DG++YV D+ SRK  N F     + G   ++          S +GQ+
Sbjct: 390 FSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIAT----------SRNGQY 439

Query: 409 VAAANCFGDVYIFN 450
           VA  +  G V I+N
Sbjct: 440 VACGSNCGVVNIYN 453

>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
 Frame = -2

Query: 540 RALFLGQKPPAVTETIIHSRYEPVLPLD----------LKVKYVDIPKAVSCSDPLPIST 391
           R +FLG  P  +TE  I    EP  P+D            V +++I  A+     LP++ 
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQELPLNP 265

Query: 390 HKHFCDRLFFGRSFCSIDL 334
            K    R+++GR  C++ L
Sbjct: 266 -KWSKRRIYYGRDRCAVGL 283

>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50|
          Length = 552

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +1

Query: 229 FTADSSSLLLSCNDGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQW 408
           F++DS  +     +G++YV D+ SRK  N F     + G   ++          S +GQ+
Sbjct: 386 FSSDSKRIYTYSENGEVYVWDVNSRKCMNRFLDEGSLCGLSIAA----------SKNGQY 435

Query: 409 VAAANCFGDVYIFN 450
           VA  +  G V I+N
Sbjct: 436 VACGSKSGVVNIYN 449

>HAT2_CANAL (Q59RH5) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 382

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
 Frame = +1

Query: 349 KTSSKEQPVTKM----------FVSADGQWVAAANCFGDVYIFNLEIQ-RQHWFIPRMND 495
           K +SK + V K+          ++  D   VA  N  G+V ++NL+ + R   F P   +
Sbjct: 86  KANSKIKTVQKLENNAEICRARYMPQDANIVATINGLGEVDLYNLDTETRYSHFAPHTKN 145

Query: 496 GFGYSW 513
           G+G SW
Sbjct: 146 GYGLSW 151

>SYIM_HUMAN (Q9NSE4) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1012

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 298 SRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSAD--GQWVAAANCFGDVYI 444
           S+ + N+ HP   ++G +  SKE P       AD    WVA +N F +V I
Sbjct: 666 SKSLGNVIHPDVVVNGGQDQSKEPP-----YGADVLRWWVADSNVFTEVAI 711

>A16L1_HUMAN (Q676U5) Autophagy-related protein 16-1 (APG16-like 1)|
          Length = 607

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 253 LLSCN-DGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCF 429
           LLSC+ D  + V+D+ +  I   F       G K  S     T++  S DG +VAA +  
Sbjct: 503 LLSCSRDDLLKVIDLRTNAIKQTF----SAPGFKCGSDW---TRVVFSPDGSYVAAGSAE 555

Query: 430 GDVYIFNL 453
           G +YI+++
Sbjct: 556 GSLYIWSV 563

>SYIM_MACFA (Q4R646) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) (Fragment)
          Length = 993

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 298 SRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSAD--GQWVAAANCFGDVYI 444
           S+ + N+ HP   ++G +  SKE P       AD    WVA +N F +V I
Sbjct: 647 SKSLGNVIHPDVVVNGGQDQSKEPP-----YGADVLRWWVADSNVFTEVAI 692

>GYRB_RICPR (Q9ZCX2) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 807

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 184 YLERT--SFHPCVLVQKGRVSHNLSRQIAFHW 95
           Y++R   + HPC++V    V   +S ++A HW
Sbjct: 238 YIDRAKHAIHPCIVVNTVHVESGISLELALHW 269

>UTP13_YEAST (Q05946) U3 small nucleolar RNA-associated protein 13 (U3|
           snoRNA-associated protein 13)
          Length = 817

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = +1

Query: 34  RQVVH-LKSKGSRKIIASAVSTNGMLFAYSDCVKPCLFALRH-KGGKKFSLDKMELPKGI 207
           R+++H + ++  ++I A  ++ +G    Y    +  L  + H K GK     K+      
Sbjct: 50  RKILHKISNEDEQEITALKLTPDGQYLTYVSQAQ--LLKIFHLKTGKVVRSMKI------ 101

Query: 208 PSSQSMMFTADSSSLLLSCN--DGKIYVVDIASRKISNIF 321
            SS S +  ADS+S LL+    DG I VVDI +  I++ F
Sbjct: 102 -SSPSYILDADSTSTLLAVGGTDGSIIVVDIENGYITHSF 140

>NEGR1_PONPY (Q5R412) Neuronal growth regulator 1 precursor|
          Length = 354

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 84  CCFHQWNAICLLRLCETLPFC 146
           CC +QW A  LL LC  LP C
Sbjct: 11  CCSNQWLAAVLLSLCCLLPSC 31

>NEGR1_HUMAN (Q7Z3B1) Neuronal growth regulator 1 precursor|
          Length = 354

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 84  CCFHQWNAICLLRLCETLPFC 146
           CC +QW A  LL LC  LP C
Sbjct: 11  CCSNQWLAAVLLSLCCLLPSC 31

>A16L1_MOUSE (Q8C0J2) Autophagy-related protein 16-1 (APG16-like 1)|
          Length = 607

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 253 LLSCN-DGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTKMFVSADGQWVAAANCF 429
           LLSC+ D  + V+D+ +  +   F       G K  S     T++  S DG +VAA +  
Sbjct: 503 LLSCSRDDLLKVIDLRTNAVKQTF----SAPGFKCGSDW---TRVVFSPDGSYVAAGSAE 555

Query: 430 GDVYIFNL 453
           G +Y++++
Sbjct: 556 GSLYVWSV 563

>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)|
           (Beta'-COP)
          Length = 1000

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/103 (17%), Positives = 43/103 (41%)
 Frame = +1

Query: 172 FSLDKMELPKGIPSSQSMMFTADSSSLLLSCNDGKIYVVDIASRKISNIFHPTRKIDGAK 351
           F  +   L + I  +   ++ +D+  ++  C D   YV+  ++  ++N    T   DG +
Sbjct: 453 FDWESAVLVRRIEITSKSIYWSDNGEMVAICGDDSFYVLKYSAEAVANATEVTE--DGIE 510

Query: 352 TSSKEQPVTKMFVSADGQWVAAANCFGDVYIFNLEIQRQHWFI 480
            + +        +    + V      GD +IF   + R ++++
Sbjct: 511 DAFE-------VIGEQAEAVKTGFWIGDCFIFTTALNRINYYV 546

>Y1491_SYNY3 (P74598) Hypothetical WD-repeat protein sll1491|
          Length = 348

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 220 SMMFTADSSSLLLSCNDGKIYVVDIASRKISNIFHPTRKIDGAKTSSKEQPVTK---MFV 390
           ++  T D   L ++  D +I ++D+A++++                S+  PV     + +
Sbjct: 66  ALNITPDGKYLAVATADNQITLIDLANQEV--------------VYSQRSPVNNFADLAI 111

Query: 391 SADGQWVAAA 420
           SADGQW+A A
Sbjct: 112 SADGQWLAIA 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,277,927
Number of Sequences: 219361
Number of extensions: 2208761
Number of successful extensions: 5155
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5151
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)