ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7f24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL162292.20| Human DNA sequence from clone RP11-6L15 on chro... 46 0.12
2ref|NM_192623.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
4dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
5dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
6gb|AC122357.4| Mus musculus BAC clone RP23-403O8 from chromosome... 40 7.5
7gb|AC159290.2| Mus musculus BAC clone RP23-291I2 from chromosome... 40 7.5
8gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 7.5
9ref|NM_183377.1| Homo sapiens amiloride-sensitive cation channel... 40 7.5
10gb|AF405606.1| Homo sapiens insulin-stimulated protein kinase 1 ... 40 7.5
11gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.5
12gb|AC119943.12| Mus musculus chromosome 10, clone RP24-271F24, c... 40 7.5
13ref|XM_592001.2| PREDICTED: Bos taurus similar to YEATS domain c... 40 7.5
14gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 7.5
15gb|AC166912.2| Mus musculus chromosome 18, clone wi1-1146E3, com... 40 7.5
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.5
17ref|XM_756775.1| Ustilago maydis 521 hypothetical protein (UM057... 40 7.5
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 7.5
19emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 7.5
20gb|AC124426.4| Mus musculus BAC clone RP24-231B8 from chromosome... 40 7.5
21gb|AC154411.2| Mus musculus BAC clone RP24-221F4 from chromosome... 40 7.5
22emb|AL807772.12| Human DNA sequence from clone RP11-188G3 on chr... 40 7.5
23gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.5
24emb|AL627278.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 7.5
25emb|AL834182.1|HSM805478 Homo sapiens mRNA; cDNA DKFZp761M1724 (... 40 7.5
26gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.5
27gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complet... 40 7.5
28gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, comple... 40 7.5
29gb|AE011708.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 7.5
30gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genom... 40 7.5
31ref|NM_011264.1| Mus musculus REV3-like, catalytic subunit of DN... 40 7.5
32dbj|AK149705.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 7.5
33gb|AC090307.7| Homo sapiens chromosome 18, clone RP11-851B10, co... 40 7.5
34gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, c... 40 7.5
35dbj|AK032532.1| Mus musculus adult male olfactory brain cDNA, RI... 40 7.5
36gb|BC048946.1| Mus musculus REV3-like, catalytic subunit of DNA ... 40 7.5
37dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
38emb|BX255936.11| Zebrafish DNA sequence from clone CH211-113K19 ... 40 7.5
39gb|AY220098.1| Phaseolus acutifolius vacuolar ATPase subunit E m... 40 7.5
40gb|AC157533.2| Pan troglodytes BAC clone CH251-276N1 from chromo... 40 7.5
41gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can... 40 7.5
42ref|XM_228273.3| PREDICTED: Rattus norvegicus REV3-like, catalyt... 40 7.5
43ref|XM_345160.2| PREDICTED: Rattus norvegicus polyadenylate bind... 40 7.5
44gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 7.5
45gb|AC146977.22| Mus musculus chromosome 13, clone RP23-106I12, c... 40 7.5
46dbj|AK108122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
47emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome 40 7.5
48gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 7.5
49emb|Z35765.1|SCYBL004W S.cerevisiae chromosome II reading frame ... 40 7.5
50emb|CT030172.10| Mouse DNA sequence from clone RP23-313L22 on ch... 40 7.5
51emb|CT573034.8| Mouse DNA sequence from clone RP23-156C20 on chr... 40 7.5
52emb|CT009534.18| Mouse DNA sequence from clone RP23-106A16 on ch... 40 7.5
53emb|CT030722.6| Mouse DNA sequence from clone RP23-191N15 on chr... 40 7.5
54gb|AC132393.4| Mus musculus BAC clone RP23-386K20 from 1, comple... 40 7.5
55dbj|AB208933.1| Homo sapiens mRNA for ribosomal protein S6 kinas... 40 7.5
56dbj|AB031049.1| Mus musculus Sez4 mRNA for DNA polymerase, compl... 40 7.5 
>emb|AL162292.20| Human DNA sequence from clone RP11-6L15 on chromosome 20 Contains the
             5' end of the gene for the downstream of tyrosine kinase 5
             (DOK5) protein and a CpG island, complete sequence
          Length = 100382

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 66    ggggctgagacttggcctcatca 88
             |||||||||||||||||||||||
Sbjct: 41422 ggggctgagacttggcctcatca 41400
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>ref|NM_192623.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1509

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 157 cggctcgagcggctcatcctg 177
           |||||||||||||||||||||
Sbjct: 823 cggctcgagcggctcatcctg 843
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 157      cggctcgagcggctcatcctg 177
                |||||||||||||||||||||
Sbjct: 23348779 cggctcgagcggctcatcctg 23348799
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1103C09
          Length = 163996

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   cggctcgagcggctcatcctg 177
             |||||||||||||||||||||
Sbjct: 74477 cggctcgagcggctcatcctg 74497
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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451D05
          Length = 148381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    cggctcgagcggctcatcctg 177
              |||||||||||||||||||||
Sbjct: 135521 cggctcgagcggctcatcctg 135541
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>gb|AC122357.4| Mus musculus BAC clone RP23-403O8 from chromosome 13, complete sequence
          Length = 203039

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 465    tgaagctggcagtgccaggc 484
              ||||||||||||||||||||
Sbjct: 192642 tgaagctggcagtgccaggc 192661



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 465    tgaagctggcagtgccaggc 484
              ||||||||||||||||||||
Sbjct: 151889 tgaagctggcagtgccaggc 151908
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>gb|AC159290.2| Mus musculus BAC clone RP23-291I2 from chromosome 13, complete sequence
          Length = 231853

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   tgaagctggcagtgccaggc 484
             ||||||||||||||||||||
Sbjct: 34186 tgaagctggcagtgccaggc 34205
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ggcagcagcggcggcggccc 27
              ||||||||||||||||||||
Sbjct: 527641 ggcagcagcggcggcggccc 527622
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>ref|NM_183377.1| Homo sapiens amiloride-sensitive cation channel 1, neuronal
           (degenerin) (ACCN1), transcript variant 1, mRNA
          Length = 3470

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 6   ctggcagcagcggcggcggccccg 29
           ||||| ||||||||||||||||||
Sbjct: 858 ctggcggcagcggcggcggccccg 835
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>gb|AF405606.1| Homo sapiens insulin-stimulated protein kinase 1 (RPS6KA3) gene,
           partial cds
          Length = 671

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 9   gcagcagcggcggcggcccc 28
           ||||||||||||||||||||
Sbjct: 301 gcagcagcggcggcggcccc 282
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     cctggaggggttccggagca 193
               ||||||||||||||||||||
Sbjct: 2416289 cctggaggggttccggagca 2416270
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>gb|AC119943.12| Mus musculus chromosome 10, clone RP24-271F24, complete sequence
          Length = 174009

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      ctggcagcagcggcggcggc 25
              ||||||||||||||||||||
Sbjct: 107696 ctggcagcagcggcggcggc 107677
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>ref|XM_592001.2| PREDICTED: Bos taurus similar to YEATS domain containing 2
            (LOC514192), mRNA
          Length = 9132

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    ctggcagcagcggcggcggc 25
            ||||||||||||||||||||
Sbjct: 2504 ctggcagcagcggcggcggc 2523
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 449     ctgaaaaaggtgattatgaa 468
               ||||||||||||||||||||
Sbjct: 2979736 ctgaaaaaggtgattatgaa 2979717
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>gb|AC166912.2| Mus musculus chromosome 18, clone wi1-1146E3, complete sequence
          Length = 37269

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   ctgcacatcatgtctgaaaa 455
             ||||||||||||||||||||
Sbjct: 27739 ctgcacatcatgtctgaaaa 27758
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 2        gccactggcagcagcggcggcggc 25
                ||||| ||||||||||||||||||
Sbjct: 11726321 gccaccggcagcagcggcggcggc 11726344
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>ref|XM_756775.1| Ustilago maydis 521 hypothetical protein (UM05721.1) partial mRNA
          Length = 3720

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    ctggcagcagcggcggcggc 25
            ||||||||||||||||||||
Sbjct: 1673 ctggcagcagcggcggcggc 1654
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    ccatcggcatggccagccca 324
              ||||||||||||||||||||
Sbjct: 941725 ccatcggcatggccagccca 941744
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 2       gccactggcagcagcggcggcggccccgtcca 33
               ||||| ||| ||||||||||||||| ||||||
Sbjct: 1016661 gccaccggcggcagcggcggcggccacgtcca 1016692
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>gb|AC124426.4| Mus musculus BAC clone RP24-231B8 from chromosome 13, complete sequence
          Length = 199585

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 465    tgaagctggcagtgccaggc 484
              ||||||||||||||||||||
Sbjct: 178217 tgaagctggcagtgccaggc 178236



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   tgaagctggcagtgccaggc 484
             ||||||||||||||||||||
Sbjct: 59235 tgaagctggcagtgccaggc 59254
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>gb|AC154411.2| Mus musculus BAC clone RP24-221F4 from chromosome 17, complete sequence
          Length = 174229

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    aaaaggtgattatgaagctg 472
              ||||||||||||||||||||
Sbjct: 152594 aaaaggtgattatgaagctg 152575
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>emb|AL807772.12| Human DNA sequence from clone RP11-188G3 on chromosome X Contains the 5'
              end of the RPS6KA3 gene for ribosomal protein S6 kinase,
              90kDa, polypeptide 3 (RSK, HU-2, HU-3, RSK2, MRX19, ISPK-1,
              MAPKAPK1B) and a CpG island, complete sequence
          Length = 129996

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      gcagcagcggcggcggcccc 28
              ||||||||||||||||||||
Sbjct: 107792 gcagcagcggcggcggcccc 107811
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>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      gccactggcagcagcggcggcggc 25
              ||||| ||||||||||||||||||
Sbjct: 115416 gccaccggcagcagcggcggcggc 115439
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>emb|AL627278.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 14/20
          Length = 258050

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     ctggcagcagcggcggcggc 25
             ||||||||||||||||||||
Sbjct: 54729 ctggcagcagcggcggcggc 54710
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>emb|AL834182.1|HSM805478 Homo sapiens mRNA; cDNA DKFZp761M1724 (from clone DKFZp761M1724)
          Length = 3470

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 6   ctggcagcagcggcggcggccccg 29
           ||||| ||||||||||||||||||
Sbjct: 858 ctggcggcagcggcggcggccccg 835
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 8       ggcagcagcggcggcggccc 27
               ||||||||||||||||||||
Sbjct: 1188792 ggcagcagcggcggcggccc 1188773
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>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence
          Length = 48498

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ctggcagcagcggcggcggc 25
             ||||||||||||||||||||
Sbjct: 37199 ctggcagcagcggcggcggc 37218
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>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence
          Length = 79677

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ctggcagcagcggcggcggc 25
             ||||||||||||||||||||
Sbjct: 15912 ctggcagcagcggcggcggc 15931
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>gb|AE011708.1| Xanthomonas axonopodis pv. citri str. 306,  section 86 of 469 of the
            complete genome
          Length = 13079

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  ccatcggcatggccagccca 324
            ||||||||||||||||||||
Sbjct: 5223 ccatcggcatggccagccca 5242
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>gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete
             sequence
          Length = 75812

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   tccctccttcctcgcctact 418
             ||||||||||||||||||||
Sbjct: 63113 tccctccttcctcgcctact 63132
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>ref|NM_011264.1| Mus musculus REV3-like, catalytic subunit of DNA polymerase zeta
           RAD54 like (S. cerevisiae) (Rev3l), mRNA
          Length = 10672

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ctggcagcagcggcggcggc 25
           ||||||||||||||||||||
Sbjct: 270 ctggcagcagcggcggcggc 251
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>dbj|AK149705.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
          enriched library, clone:G530011F03 product:eukaryotic
          translation initiation factor 5A, full insert sequence
          Length = 1260

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  ctggcagcagcggcggcggc 25
          ||||||||||||||||||||
Sbjct: 56 ctggcagcagcggcggcggc 75
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>gb|AC090307.7| Homo sapiens chromosome 18, clone RP11-851B10, complete sequence
          Length = 170269

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tctgaaaaaggtgattatga 467
             ||||||||||||||||||||
Sbjct: 86179 tctgaaaaaggtgattatga 86198
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>gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, complete sequence
          Length = 184875

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      ctggcagcagcggcggcggccccg 29
              ||||| ||||||||||||||||||
Sbjct: 125877 ctggcggcagcggcggcggccccg 125900
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>dbj|AK032532.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430584K11 product:REV3-like,
           catalytic subunit of DNA polymerase zeta RAD54 like (S.
           cerevisiae), full insert sequence
          Length = 2852

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ctggcagcagcggcggcggc 25
           ||||||||||||||||||||
Sbjct: 312 ctggcagcagcggcggcggc 293
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>gb|BC048946.1| Mus musculus REV3-like, catalytic subunit of DNA polymerase zeta
           RAD54 like (S. cerevisiae), mRNA (cDNA clone
           IMAGE:6467729), containing frame-shift errors
          Length = 3613

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ctggcagcagcggcggcggc 25
           ||||||||||||||||||||
Sbjct: 302 ctggcagcagcggcggcggc 283
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 2        gccactggcagcagcggcggcggc 25
                ||||| ||||||||||||||||||
Sbjct: 11723084 gccaccggcagcagcggcggcggc 11723107
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>emb|BX255936.11| Zebrafish DNA sequence from clone CH211-113K19 in linkage group 7,
             complete sequence
          Length = 93340

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   ttcctgagtctgaatgtgcg 368
             ||||||||||||||||||||
Sbjct: 91218 ttcctgagtctgaatgtgcg 91237
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>gb|AY220098.1| Phaseolus acutifolius vacuolar ATPase subunit E mRNA, partial cds
          Length = 931

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 524 acatcaagtcgtgcatcaag 543
           ||||||||||||||||||||
Sbjct: 615 acatcaagtcgtgcatcaag 596
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>gb|AC157533.2| Pan troglodytes BAC clone CH251-276N1 from chromosome unknown, complete
             sequence
          Length = 155641

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tctgaaaaaggtgattatga 467
             ||||||||||||||||||||
Sbjct: 61093 tctgaaaaaggtgattatga 61112
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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 131209

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tggcagcagcggcggcggcc 26
             ||||||||||||||||||||
Sbjct: 76938 tggcagcagcggcggcggcc 76957
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>ref|XM_228273.3| PREDICTED: Rattus norvegicus REV3-like, catalytic subunit of DNA
           polymerase zeta RAD54 like (S. cerevisiae) (predicted)
           (Rev3l_predicted), mRNA
          Length = 10797

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ctggcagcagcggcggcggc 25
           ||||||||||||||||||||
Sbjct: 686 ctggcagcagcggcggcggc 667
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>ref|XM_345160.2| PREDICTED: Rattus norvegicus polyadenylate binding
           protein-interacting protein 1 (predicted)
           (Paip1_predicted), mRNA
          Length = 1223

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  agcagcggcggcggccccgt 30
           ||||||||||||||||||||
Sbjct: 81  agcagcggcggcggccccgt 100
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 6       ctggcagcagcggcggcggc 25
               ||||||||||||||||||||
Sbjct: 3213669 ctggcagcagcggcggcggc 3213650
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>gb|AC146977.22| Mus musculus chromosome 13, clone RP23-106I12, complete sequence
          Length = 200131

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    tgaagctggcagtgccaggc 484
              ||||||||||||||||||||
Sbjct: 103037 tgaagctggcagtgccaggc 103018
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>dbj|AK108122.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D01, full
           insert sequence
          Length = 694

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 2   gccactggcagcagcggcggcggc 25
           ||||| ||||||||||||||||||
Sbjct: 491 gccaccggcagcagcggcggcggc 514
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>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome
          Length = 366924

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    tccctccttcctcgcctact 418
              ||||||||||||||||||||
Sbjct: 213071 tccctccttcctcgcctact 213052
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 6       ctggcagcagcggcggcggc 25
               ||||||||||||||||||||
Sbjct: 3246224 ctggcagcagcggcggcggc 3246205
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>emb|Z35765.1|SCYBL004W S.cerevisiae chromosome II reading frame ORF YBL004w
          Length = 14999

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   ctgcacatcatgtctgaaaa 455
             ||||||||||||||||||||
Sbjct: 10760 ctgcacatcatgtctgaaaa 10779
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>emb|CT030172.10| Mouse DNA sequence from clone RP23-313L22 on chromosome 13, complete
              sequence
          Length = 228833

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    tgaagctggcagtgccaggc 484
              ||||||||||||||||||||
Sbjct: 227678 tgaagctggcagtgccaggc 227659



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   tgaagctggcagtgccaggc 484
             ||||||||||||||||||||
Sbjct: 18885 tgaagctggcagtgccaggc 18866
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>emb|CT573034.8| Mouse DNA sequence from clone RP23-156C20 on chromosome 13, complete
             sequence
          Length = 117658

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   tgaagctggcagtgccaggc 484
             ||||||||||||||||||||
Sbjct: 82968 tgaagctggcagtgccaggc 82949
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>emb|CT009534.18| Mouse DNA sequence from clone RP23-106A16 on chromosome 17, complete
             sequence
          Length = 195558

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   aaaaggtgattatgaagctg 472
             ||||||||||||||||||||
Sbjct: 34163 aaaaggtgattatgaagctg 34144
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>emb|CT030722.6| Mouse DNA sequence from clone RP23-191N15 on chromosome 13, complete
              sequence
          Length = 187837

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    tgaagctggcagtgccaggc 484
              ||||||||||||||||||||
Sbjct: 153608 tgaagctggcagtgccaggc 153589
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>gb|AC132393.4| Mus musculus BAC clone RP23-386K20 from 1, complete sequence
          Length = 220050

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   tggaagctggtcaagcctac 518
             ||||||||||||||||||||
Sbjct: 58207 tggaagctggtcaagcctac 58188
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>dbj|AB208933.1| Homo sapiens mRNA for ribosomal protein S6 kinase, 90kDa,
          polypeptide 3 variant protein
          Length = 3442

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 9  gcagcagcggcggcggcccc 28
          ||||||||||||||||||||
Sbjct: 66 gcagcagcggcggcggcccc 47
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>dbj|AB031049.1| Mus musculus Sez4 mRNA for DNA polymerase, complete cds
          Length = 10672

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ctggcagcagcggcggcggc 25
           ||||||||||||||||||||
Sbjct: 270 ctggcagcagcggcggcggc 251


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,743,509
Number of Sequences: 3902068
Number of extensions: 4743509
Number of successful extensions: 109489
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108929
Number of HSP's gapped (non-prelim): 555
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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