ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAX2_ORYSA (Q688J2) Auxin transporter-like protein 2 28 7.1
2AUX1_ARATH (Q96247) Auxin transporter protein 1 (Auxin influx ca... 28 9.2

>LAX2_ORYSA (Q688J2) Auxin transporter-like protein 2|
          Length = 482

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 128 PSSSWQDRXIILLSMYSHITFG 63
           P S W+D  +IL+ ++  ITFG
Sbjct: 305 PRSGWRDAAVILMLIHQFITFG 326



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>AUX1_ARATH (Q96247) Auxin transporter protein 1 (Auxin influx carrier protein|
           1) (Polar auxin transport inhibitor resistant protein 1)
          Length = 485

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 128 PSSSWQDRXIILLSMYSHITFG 63
           P ++W+D  +IL+ ++  ITFG
Sbjct: 306 PKNAWRDAAVILMLIHQFITFG 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,815,763
Number of Sequences: 219361
Number of extensions: 196373
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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