ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7f17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA 90 2e-15
2gb|AY104649.1| Zea mays PCO133877 mRNA sequence 62 4e-07
3dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 1e-04
6emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 54 1e-04
7dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone... 54 1e-04
8gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome... 52 4e-04
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 4e-04
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 4e-04
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.10
12dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.10
13ref|XM_749130.1| Aspergillus fumigatus Af293 DNA replication lic... 42 0.40
14emb|AL118502.38|HSA371L19 Human DNA sequence from clone RP11-371... 42 0.40
15gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 0.40
16ref|NM_191424.1| Oryza sativa (japonica cultivar-group), predic... 40 1.6
17gb|AC112155.3| Mus musculus BAC clone RP24-100G17 from chromosom... 40 1.6
18gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, co... 40 1.6
19dbj|AK143048.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 1.6
20gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, comple... 40 1.6
21ref|NM_117980.2| Arabidopsis thaliana ATP binding / protein kina... 38 6.3
22gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome 38 6.3
23gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, com... 38 6.3
24gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 38 6.3
25emb|AL450426.7| Human DNA sequence from clone RP11-317C20 on chr... 38 6.3
26emb|AL359313.11| Human DNA sequence from clone RP1-321C2 on chro... 38 6.3
27emb|AL354920.21| Human DNA sequence from clone RP11-522I20 on ch... 38 6.3
28emb|AL354942.10| Human DNA sequence from clone RP11-57O22 on chr... 38 6.3
29emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, ... 38 6.3
30emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, B... 38 6.3
31emb|AL603710.8| Mouse DNA sequence from clone RP23-247B13 on chr... 38 6.3
32emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in... 38 6.3
33emb|BX465215.8| Zebrafish DNA sequence from clone DKEY-186M8 in ... 38 6.3
34gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, compl... 38 6.3
35gb|AC016582.9| Homo sapiens chromosome 19 clone CTD-2554C21, com... 38 6.3
36gb|AC020925.8| Homo sapiens chromosome 5 clone CTD-2134K2, compl... 38 6.3
37gb|AC010468.5|AC010468 Homo sapiens chromosome 5 clone CTD-2290C... 38 6.3
38dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.3
39gb|AC093227.3| Homo sapiens chromosome 19 clone CTD-2528L19, com... 38 6.3
40gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 38 6.3
41gb|AC018867.5| Homo sapiens BAC clone RP11-66C4 from 2, complete... 38 6.3
42gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complet... 38 6.3
43gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 38 6.3
44dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 38 6.3
45dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 38 6.3
46dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.3
47gb|AC007676.19|AC007676 Homo sapiens, clone RP11-9B17, complete ... 38 6.3 
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3351

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                        
Query: 4    aaaatggctggttttttgcaggatgatgatgttgagctttatgaggaaattaagttcgag 63
            ||||||||||||||||  |||||||| ||  |||| |||||||||||||| ||||| |||
Sbjct: 2185 aaaatggctggtttttcacaggatgaggaaattgaactttatgaggaaatcaagtttgag 2244

                                                                        
Query: 64   ccaaatgtgatgtgtgagtacattgataatagaattatnttccggtcttgccagctggaa 123
            || ||||| |||||||| || ||||| |||||  || | || ||  |||||||||| |||
Sbjct: 2245 cccaatgtaatgtgtgaatatattgacaataggcttctatttcgagcttgccagcttgaa 2304

                    
Query: 124  gatggtga 131
            ||||||||
Sbjct: 2305 gatggtga 2312
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>gb|AY104649.1| Zea mays PCO133877 mRNA sequence
          Length = 927

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                     
Query: 35 ttgagctttatgaggaaattaagttcgagccaaatgtgatgtg 77
          ||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 3  ttgagctgtacgaggaaattaagtttgagccaaatgtgatgtg 45
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>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full
            insert sequence
          Length = 3975

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                          
Query: 35   ttgagctttatgaggaaattaagttcgagccaaatgtgatgtgtga 80
            ||||||| || ||||||||||| || ||||||||||||||||||||
Sbjct: 2210 ttgagctctacgaggaaattaaatttgagccaaatgtgatgtgtga 2255
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 47       aggaaattaagttcgagccaaatgtgatgtg 77
                ||||||||||||| |||||||||||||||||
Sbjct: 18385016 aggaaattaagtttgagccaaatgtgatgtg 18385046
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 47       aggaaattaagttcgagccaaatgtgatgtg 77
                ||||||||||||| |||||||||||||||||
Sbjct: 18311242 aggaaattaagtttgagccaaatgtgatgtg 18311272
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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 47    aggaaattaagttcgagccaaatgtgatgtg 77
             ||||||||||||| |||||||||||||||||
Sbjct: 36915 aggaaattaagtttgagccaaatgtgatgtg 36945
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>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 47    aggaaattaagttcgagccaaatgtgatgtgtgag 81
             |||||||||||||||| |||||||| |||||||||
Sbjct: 79629 aggaaattaagttcgaaccaaatgtcatgtgtgag 79595
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>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0077M24, complete sequence
          Length = 128920

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 47    aggaaattaagttcgagccaaatgtgatgtgtga 80
             |||||||||| || ||||||||||||||||||||
Sbjct: 88432 aggaaattaaatttgagccaaatgtgatgtgtga 88399
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 47       aggaaattaagttcgagccaaatgtgatgtgtga 80
                |||||||||| || ||||||||||||||||||||
Sbjct: 20653424 aggaaattaaatttgagccaaatgtgatgtgtga 20653391
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 47       aggaaattaagttcgagccaaatgtgatgtgtga 80
                |||||||||| || ||||||||||||||||||||
Sbjct: 20963659 aggaaattaaatttgagccaaatgtgatgtgtga 20963626
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 4       aaaatggctggttttttgcaggatgatgatgttgagctttatgagg 49
               ||||||||||||||||  |||||||| ||  |||| ||||||||||
Sbjct: 3451824 aaaatggctggtttttcacaggatgaggaaattgaactttatgagg 3451869
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 4     aaaatggctggttttttgcaggatgatgatgttgagctttatgagg 49
             ||||||||||||||||  |||||||| ||  |||| ||||||||||
Sbjct: 91644 aaaatggctggtttttcacaggatgaggaaattgaactttatgagg 91689
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>ref|XM_749130.1| Aspergillus fumigatus Af293 DNA replication licensing factor Mcm2
           (Afu3g14010) partial mRNA
          Length = 2691

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 10  gctggttttttgcaggatgatgatg 34
           |||| ||||||||||||||||||||
Sbjct: 421 gctgcttttttgcaggatgatgatg 445
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>emb|AL118502.38|HSA371L19 Human DNA sequence from clone RP11-371L19 on chromosome 20 Contains the
             C20orf54 gene, the C20orf55 gene, the RPS10L gene for
             ribosomal protein S10-like and five CpG islands, complete
             sequence
          Length = 126259

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    gctttatgaggaaattaagtt 59
             |||||||||||||||||||||
Sbjct: 69924 gctttatgaggaaattaagtt 69904
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     agaaaaatggctggttttttg 21
             |||||||||||||||||||||
Sbjct: 77814 agaaaaatggctggttttttg 77794
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>ref|NM_191424.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3327

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 25   gatgatgatgttgagctttatgaggaaattaagttcgagccaaatgtgatgtgtga 80
            ||||| ||| |||| || ||||||||| | | ||||||||||| ||| ||||||||
Sbjct: 2188 gatgaagatattgaactgtatgaggaagtaatgttcgagccaagtgtaatgtgtga 2243
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>gb|AC112155.3| Mus musculus BAC clone RP24-100G17 from chromosome 16, complete
             sequence
          Length = 169864

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    tgagtacattgataatagaa 97
             ||||||||||||||||||||
Sbjct: 87677 tgagtacattgataatagaa 87696
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>gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, complete sequence
          Length = 233298

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     gagctttatgaggaaattaa 56
              ||||||||||||||||||||
Sbjct: 154943 gagctttatgaggaaattaa 154924
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>dbj|AK143048.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130002K09 product:hypothetical
            [2Fe-2S]-binding containing protein, full insert sequence
          Length = 1909

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   gagctttatgaggaaattaa 56
            ||||||||||||||||||||
Sbjct: 1586 gagctttatgaggaaattaa 1605
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>gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, complete sequence
          Length = 130493

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    atgttgagctttatgaggaa 51
             ||||||||||||||||||||
Sbjct: 76311 atgttgagctttatgaggaa 76292
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>ref|NM_117980.2| Arabidopsis thaliana ATP binding / protein kinase/ protein
           serine/threonine kinase/ protein-tyrosine kinase
           AT4G18640 mRNA, complete cds
          Length = 2879

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 16  tttttgcaggatgatgatg 34
           |||||||||||||||||||
Sbjct: 149 tttttgcaggatgatgatg 131
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>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 35      ttgagctttatgaggaaattaag 57
               |||||||||||| ||||||||||
Sbjct: 1216369 ttgagctttatggggaaattaag 1216347
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>gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, complete sequence
          Length = 202894

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    gatgatgatgttgagcttt 43
             |||||||||||||||||||
Sbjct: 64735 gatgatgatgttgagcttt 64717
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 35      ttgagctttatgaggaaattaag 57
               |||||||||||| ||||||||||
Sbjct: 1236426 ttgagctttatggggaaattaag 1236404
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>emb|AL450426.7| Human DNA sequence from clone RP11-317C20 on chromosome 9 Contains five
             novel olfactory (seven transmembrane helix) receptor
             genes, a pseudogene similar to part of novel olfactory
             (seven transmembrane helix) receptor and a CpG island,
             complete sequence
          Length = 136002

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 6     aatggctggttttttgcaggatg 28
             ||||||||||| |||||||||||
Sbjct: 36180 aatggctggttctttgcaggatg 36202
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>emb|AL359313.11| Human DNA sequence from clone RP1-321C2 on chromosome 6 Contains part
             of novel gene, complete sequence
          Length = 52461

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    ttttgcaggatgatgatgt 35
             |||||||||||||||||||
Sbjct: 38876 ttttgcaggatgatgatgt 38894
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>emb|AL354920.21| Human DNA sequence from clone RP11-522I20 on chromosome 9 Contains a
              novel gene, the UBQLN1 gene for ubiquilin 1 (DA41, DSK2,
              XDRP1, PLIC-1), the 3' UTR of the gene for protein kinase
              anchoring protein GKAP42 (FKSG21) and two CpG islands,
              complete sequence
          Length = 168804

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     atgttgagctttatgagga 50
              |||||||||||||||||||
Sbjct: 131080 atgttgagctttatgagga 131062
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>emb|AL354942.10| Human DNA sequence from clone RP11-57O22 on chromosome 6 Contains part
             of the gene for a novel protein (FLJ32724) and a CpG
             island, complete sequence
          Length = 198217

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    gatgatgatgttgagcttt 43
             |||||||||||||||||||
Sbjct: 77380 gatgatgatgttgagcttt 77398
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>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
          Length = 199075

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    tttttgcaggatgatgatg 34
             |||||||||||||||||||
Sbjct: 37971 tttttgcaggatgatgatg 37953
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>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
          Length = 94301

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    tttttgcaggatgatgatg 34
             |||||||||||||||||||
Sbjct: 18690 tttttgcaggatgatgatg 18672
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>emb|AL603710.8| Mouse DNA sequence from clone RP23-247B13 on chromosome 11 Contains the
              3' end of the Nt5m gene for 5'-3'-nucleotidase
              (mitochondrial), four novel genes, the Rasd1 gene for RAS
              dexamethasone-induced 1, the 3' end of the Pemt gene for
              phosphatidylethanolamine N-methyltransferase and two CpG
              islands, complete sequence
          Length = 179124

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 69     tgtgatgtgtgagtacatt 87
              |||||||||||||||||||
Sbjct: 153405 tgtgatgtgtgagtacatt 153423
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>emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in linkage group 8,
             complete sequence
          Length = 171750

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 49    gaaattaagttcgagccaaatgt 71
             ||||||||| |||||||||||||
Sbjct: 21540 gaaattaagatcgagccaaatgt 21518
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>emb|BX465215.8| Zebrafish DNA sequence from clone DKEY-186M8 in linkage group 8,
             complete sequence
          Length = 133505

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    atgttgagctttatgagga 50
             |||||||||||||||||||
Sbjct: 13406 atgttgagctttatgagga 13424
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>gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, complete sequence
          Length = 212426

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 19     ttgcaggatgatgatgttgagct 41
              ||||||||||||||||| |||||
Sbjct: 189629 ttgcaggatgatgatgtagagct 189651
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>gb|AC016582.9| Homo sapiens chromosome 19 clone CTD-2554C21, complete sequence
          Length = 188712

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   gatgatgatgttgagcttt 43
            |||||||||||||||||||
Sbjct: 4888 gatgatgatgttgagcttt 4870
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>gb|AC020925.8| Homo sapiens chromosome 5 clone CTD-2134K2, complete sequence
          Length = 161452

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 76     tgtgagtacattgataatagaat 98
              ||||| |||||||||||||||||
Sbjct: 133773 tgtgattacattgataatagaat 133795
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>gb|AC010468.5|AC010468 Homo sapiens chromosome 5 clone CTD-2290C20, complete sequence
          Length = 122102

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 76    tgtgagtacattgataatagaat 98
             ||||| |||||||||||||||||
Sbjct: 58080 tgtgattacattgataatagaat 58058
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 19       ttgcaggatgatgatgttg 37
                |||||||||||||||||||
Sbjct: 22017870 ttgcaggatgatgatgttg 22017852
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>gb|AC093227.3| Homo sapiens chromosome 19 clone CTD-2528L19, complete sequence
          Length = 111200

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     gatgatgatgttgagcttt 43
              |||||||||||||||||||
Sbjct: 107397 gatgatgatgttgagcttt 107379
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>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 35      ttgagctttatgaggaaattaag 57
               |||||||||||| ||||||||||
Sbjct: 1151973 ttgagctttatggggaaattaag 1151951
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>gb|AC018867.5| Homo sapiens BAC clone RP11-66C4 from 2, complete sequence
          Length = 78121

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    tgtgagtacattgataata 94
             |||||||||||||||||||
Sbjct: 55348 tgtgagtacattgataata 55366
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>gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complete sequence
          Length = 146559

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     tttatgaggaaattaagtt 59
              |||||||||||||||||||
Sbjct: 120259 tttatgaggaaattaagtt 120277
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>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 8       tggctggttttttgcagga 26
               |||||||||||||||||||
Sbjct: 1070236 tggctggttttttgcagga 1070218
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>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 8       tggctggttttttgcagga 26
               |||||||||||||||||||
Sbjct: 1069585 tggctggttttttgcagga 1069567
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>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 35     ttgagctttatgaggaaattaag 57
              |||||||||||| ||||||||||
Sbjct: 744911 ttgagctttatggggaaattaag 744933
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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    ttgcaggatgatgatgttg 37
             |||||||||||||||||||
Sbjct: 59934 ttgcaggatgatgatgttg 59916
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>gb|AC007676.19|AC007676 Homo sapiens, clone RP11-9B17, complete sequence
          Length = 152138

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    gatgatgatgttgagcttt 43
             |||||||||||||||||||
Sbjct: 73740 gatgatgatgttgagcttt 73722


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,372,399
Number of Sequences: 3902068
Number of extensions: 1372399
Number of successful extensions: 108824
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108522
Number of HSP's gapped (non-prelim): 301
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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