>PABT_STRGR (P33586) Probable cadicidin biosynthesis thioesterase (EC 3.1.2.-)|
           (Protein X) (ORF-1)
          Length = 361

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 263 RTRVLISPRPSTSLARRSFPRDFPIRTAPERQFLW-HEWHPQEPEAKPSSCY 111
           RTR    P P+ +  R++  RD P+ TA +    W   +HP E +A    C+
Sbjct: 82  RTRGPADPPPANTDRRQNHRRDSPVTTADDTAARWLRRYHPAEADAVRLVCF 133

>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1|
          Length = 950

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
 Frame = -3

Query: 555 PNRRTGNTLRVVDGLPEKITC-AVDMMELAIGNTAPAARRKSFSVNSKFLSLTGCLCGTE 379
           P   T     ++D +P ++      ++  A G  A  +  KS    S+  S    L   +
Sbjct: 533 PANATAQPTHILDVIPVQMNANGQPVIAPAAGRNAGDSTPKS--TESRRASKKSSLTSEQ 590

Query: 378 SLKKARPKTITPS*QNTENGLKAISLEKEQERKNMDPIPNQSADFATSFHITSSTILSQR 199
           ++++AR +           G ++ +  +E +R + +     S  F   FH   +   + R
Sbjct: 591 AMREARDREAAMLLMEVGAGARSRNSAQEDDRIHQNGALATSTSFHHDFHSARAGADTAR 650

Query: 198 LSHPDCSR 175
            SHPD SR
Sbjct: 651 TSHPDDSR 658

>RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2095

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 556  TEQKNGQHFESRRWVAREDHLCR---GYDGVSNRQHSSGSAKKIFFSQLEVPFPH 401
            TE++NG+  ++ +W+ RE+HL R      G+     ++     I  + +EVP+ H
Sbjct: 1697 TEKENGKLIDNGKWLLRENHLWRVSSDNPGMYGNADTTSVDTLIDKNSIEVPYSH 1751

>KHSE_PROMM (Q7V8D0) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 316

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 275 WIPSRTRVLISP--RPSTSLARRSFPRDFPIRTAPE 174
           WI S   V+  P  R STS ARR+ P+D PI  A E
Sbjct: 169 WINSVKAVVAIPSIRLSTSEARRAMPKDIPISDAVE 204

>UB2G1_RAT (P62255) Ubiquitin-conjugating enzyme E2 G1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase G1) (Ubiquitin carrier protein
           G1) (E217K) (UBC7)
          Length = 169

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = -1

Query: 263 RTRVLISPRPSTSL------ARRSFPRDFPIRTAPERQFLWHEWHP 144
           R  VLI   P T        A  +FP+D+P+R  P+ +F+   WHP
Sbjct: 36  RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR-PPKMKFITEIWHP 80

>UB2G1_MOUSE (P62254) Ubiquitin-conjugating enzyme E2 G1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase G1) (Ubiquitin carrier protein
           G1) (E217K) (UBC7)
          Length = 169

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = -1

Query: 263 RTRVLISPRPSTSL------ARRSFPRDFPIRTAPERQFLWHEWHP 144
           R  VLI   P T        A  +FP+D+P+R  P+ +F+   WHP
Sbjct: 36  RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR-PPKMKFITEIWHP 80

>UB2G1_HUMAN (P62253) Ubiquitin-conjugating enzyme E2 G1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase G1) (Ubiquitin carrier protein
           G1) (E217K) (UBC7)
          Length = 169

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = -1

Query: 263 RTRVLISPRPSTSL------ARRSFPRDFPIRTAPERQFLWHEWHP 144
           R  VLI   P T        A  +FP+D+P+R  P+ +F+   WHP
Sbjct: 36  RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR-PPKMKFITEIWHP 80

>IDE_RAT (P35559) Insulin-degrading enzyme (EC 3.4.24.56) (Insulysin)|
           (Insulinase) (Insulin protease)
          Length = 1019

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 233 KDVAKSALWFGMGSMFFLSCSFSREIAFSPFS----VFCQLGVMVLGLAFFKDSV 385
           KD A S LWF     FFL  +      FSPF+    + C +  + L L   KDS+
Sbjct: 552 KDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLEL--LKDSL 604

>IDE_MOUSE (Q9JHR7) Insulin-degrading enzyme (EC 3.4.24.56) (Insulysin)|
           (Insulinase) (Insulin protease)
          Length = 1019

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 233 KDVAKSALWFGMGSMFFLSCSFSREIAFSPFS----VFCQLGVMVLGLAFFKDSV 385
           KD A S LWF     FFL  +      FSPF+    + C +  + L L   KDS+
Sbjct: 552 KDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLEL--LKDSL 604


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,051,720
Number of Sequences: 219361
Number of extensions: 1597664
Number of successful extensions: 5055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5055
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)