ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7f13 |
|---|---|
| Clone Library Name | barley_pub |
>OPDA_HAEIN (P44573) Oligopeptidase A (EC 3.4.24.70)| Length = 681 Score = 116 bits (290), Expect = 3e-26 Identities = 62/151 (41%), Positives = 87/151 (57%) Frame = +2 Query: 17 SERLRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCV 196 SE+ ++ Y I++E LRPYF +V+ GLF L ++ I G+ W+ DV+F+ + Sbjct: 339 SEKQKQHLYAINDEELRPYFPENRVISGLFELIKRIFNIRAVERKGV-DTWHKDVRFFDL 397 Query: 197 KDSSXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPV 376 D + FY D Y+R KRGGAWM+ R L S+ PVA++ CN P+ Sbjct: 398 IDENDQLRGSFYLDLYAR-EHKRGGAWMDDCIGRKRKL---DGSIETPVAYLTCNFNAPI 453 Query: 377 GDKPSLMTFREVETXFHEFGHALQHMLTRQD 469 G+KP+L T EV T FHEFGH + HMLT+ D Sbjct: 454 GNKPALFTHNEVTTLFHEFGHGIHHMLTQID 484
>OPDA_ECOLI (P27298) Oligopeptidase A (EC 3.4.24.70)| Length = 680 Score = 114 bits (285), Expect = 1e-25 Identities = 62/149 (41%), Positives = 89/149 (59%) Frame = +2 Query: 17 SERLRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCV 196 SE+ ++ Y I +E LRPYF K ++GLF + ++ GIT + + VW+ DV+F+ + Sbjct: 338 SEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDV-DVWHPDVRFFEL 396 Query: 197 KDSSXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPV 376 D + FY D Y+R + KRGGAWM+ + + + S++ PVA++ CN PV Sbjct: 397 YDENNELRGSFYLDLYAREN-KRGGAWMDDCVGQ---MRKADGSLQKPVAYLTCNFNRPV 452 Query: 377 GDKPSLMTFREVETXFHEFGHALQHMLTR 463 KP+L T EV T FHEFGH L HMLTR Sbjct: 453 NGKPALFTHDEVITLFHEFGHGLHHMLTR 481
>OPDA_SALTY (P27237) Oligopeptidase A (EC 3.4.24.70)| Length = 680 Score = 112 bits (279), Expect = 6e-25 Identities = 60/149 (40%), Positives = 88/149 (59%) Frame = +2 Query: 17 SERLRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCV 196 SE+ ++ Y I +E LRPYF K ++GLF + ++ GIT + + VW+ +V+F+ + Sbjct: 338 SEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERTDV-DVWHPEVRFFEL 396 Query: 197 KDSSXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPV 376 D + FY D Y+R KRGGAWM+ + + + +++ PVA++ CN PV Sbjct: 397 YDENNELRGSFYLDLYAR-EHKRGGAWMDDCVGQ---MRKADGTLQKPVAYLTCNFNRPV 452 Query: 377 GDKPSLMTFREVETXFHEFGHALQHMLTR 463 KP+L T EV T FHEFGH L HMLTR Sbjct: 453 NGKPALFTHDEVITLFHEFGHGLHHMLTR 481
>DCP_ECOLI (P24171) Peptidyl-dipeptidase dcp (EC 3.4.15.5) (Dipeptidyl| carboxypeptidase) Length = 680 Score = 95.9 bits (237), Expect = 5e-20 Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Frame = +2 Query: 17 SERLRESKYDIDEEGLRPYFALPKVM-DGLFSLANKLXGITVEAAXGLAPVWNXDVKFYC 193 +E++R K+D+DE L+PYF L V+ +G+F AN+L GI + PV++ DV+ + Sbjct: 340 AEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDI-PVYHPDVRVWE 398 Query: 194 VKDSSXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPP 373 + D + +A FY D ++R S K GGAWM + + H PV + VCN P Sbjct: 399 IFDHNGVGLALFYGDFFARDS-KSGGAWMGNFVEQSTLNKTH------PVIYNVCNYQKP 451 Query: 374 VGDKPSLMTFREVETXFHEFGHALQHMLTRQ 466 +P+L+ + +V T FHEFGH L + RQ Sbjct: 452 AAGEPALLLWDDVITLFHEFGHTLHGLFARQ 482
>DCP_SALTY (P27236) Peptidyl-dipeptidase dcp (EC 3.4.15.5) (Dipeptidyl| carboxypeptidase) Length = 680 Score = 95.5 bits (236), Expect = 6e-20 Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Frame = +2 Query: 17 SERLRESKYDIDEEGLRPYFALPKVM-DGLFSLANKLXGITVEAAXGLAPVWNXDVKFYC 193 +E++R KY +DE L+PYFAL V+ +G+F AN+L GIT + PV++ DV+ + Sbjct: 340 AEQVRREKYALDEAQLKPYFALNTVLQEGVFWTANQLFGITFVERFDI-PVYHPDVRVWE 398 Query: 194 VKDSSXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPP 373 + DS +A FY D ++R S K GGAWM + + + PV + VCN P Sbjct: 399 IFDSDGVGMALFYGDFFARDS-KSGGAWMGNFVEQSTL------NETRPVIYNVCNYQKP 451 Query: 374 VGDKPSLMTFREVETXFHEFGHALQHMLTRQ 466 V +P+L+ + +V T FHEFGH L + Q Sbjct: 452 VDGQPALLLWDDVITLFHEFGHTLHGLFAVQ 482
>NEUL_RAT (P42676) Neurolysin, mitochondrial precursor (EC 3.4.24.16)| (Neurotensin endopeptidase) (Mitochondrial oligopeptidase M) (Microsomal endopeptidase) (MEP) Length = 704 Score = 84.3 bits (207), Expect = 1e-16 Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 1/147 (0%) Frame = +2 Query: 32 ESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCVKDSSX 211 E KY +D+E L+ YF + V +GL S+ +L G++ E A VWN V Y VKD + Sbjct: 370 ELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVPD-AHVWNKSVSLYTVKDKAT 428 Query: 212 SPV-AYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVGDKP 388 V FY D Y R + A + + L G+ + + VA +V N PV +P Sbjct: 429 GEVLGQFYLDLYPREGKYNHAACFGL---QPGCLLPDGSRM-MSVAALVVNFSQPVAGRP 484 Query: 389 SLMTFREVETXFHEFGHALQHMLTRQD 469 SL+ EV T FHEFGH + + + D Sbjct: 485 SLLRHDEVRTYFHEFGHVMHQICAQTD 511
>MEPD_PIG (P47788) Thimet oligopeptidase (EC 3.4.24.15) (Endopeptidase 24.15)| Length = 686 Score = 84.3 bits (207), Expect = 1e-16 Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 1/151 (0%) Frame = +2 Query: 23 RLRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCVKD 202 ++ E++Y +D+ L+ YF + V GL + +L G+T G A VW+ DV Y V+D Sbjct: 342 QVEETRYRVDQNLLKEYFPMQVVTRGLLGIYQELLGLTFHLEEGAA-VWHEDVMLYSVRD 400 Query: 203 SSXSPV-AYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVG 379 ++ V FY D Y R K G A F R S ++ +A MV N P Sbjct: 401 AASGKVIGKFYLDLYPREG-KYGHA---ACFGLQPGCLRQDGSRQIAIAAMVANFTKPTP 456 Query: 380 DKPSLMTFREVETXFHEFGHALQHMLTRQDE 472 D PSL+ EVET FHEFGH + H L Q E Sbjct: 457 DAPSLLQHDEVETYFHEFGHVM-HQLCSQAE 486
>MEPD_RAT (P24155) Thimet oligopeptidase (EC 3.4.24.15) (Endo-oligopeptidase| A) (Endopeptidase 24.15) (PZ-peptidase) (Soluble metallo-endopeptidase) Length = 686 Score = 83.6 bits (205), Expect = 2e-16 Identities = 56/151 (37%), Positives = 75/151 (49%), Gaps = 1/151 (0%) Frame = +2 Query: 23 RLRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCVKD 202 ++ E Y +D+ L+ YF + V GL ++ +L G+T G A W+ DV+ Y V+D Sbjct: 342 QVEEDSYRVDQNLLKEYFPMQVVTRGLLAIYQELLGLTFTLEEGAA-AWHEDVRLYSVRD 400 Query: 203 S-SXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVG 379 + S + FY D Y R K G A F R S +L +A MV N P Sbjct: 401 AASGEEIGKFYLDLYPREG-KYGHA---ACFGLQPGCLRQDGSRQLAIAAMVANFTKPTP 456 Query: 380 DKPSLMTFREVETXFHEFGHALQHMLTRQDE 472 D PSL+ EVET FHEFGH + H L Q E Sbjct: 457 DVPSLLQHDEVETYFHEFGHVM-HQLCSQAE 486
>NEUL_RABIT (P42675) Neurolysin, mitochondrial precursor (EC 3.4.24.16)| (Neurotensin endopeptidase) (Mitochondrial oligopeptidase M) (Microsomal endopeptidase) (MEP) Length = 704 Score = 82.4 bits (202), Expect = 5e-16 Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 1/147 (0%) Frame = +2 Query: 32 ESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCVKDSSX 211 E KY ID+E ++ YF + V +GL ++ +L G++ E A VWN V Y VKD + Sbjct: 370 ELKYSIDQEFIKEYFPIEVVTEGLLNIYQELLGLSFEQVAD-AHVWNPSVTLYTVKDKAT 428 Query: 212 SPV-AYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVGDKP 388 V FY D Y R + A + + L G+ + L VA +V N PV +P Sbjct: 429 GEVLGQFYLDLYPREGKYNHAACFGL---QPGCLLPDGSRM-LSVAALVVNFSQPVAGRP 484 Query: 389 SLMTFREVETXFHEFGHALQHMLTRQD 469 SL+ EV T FHEFGH + + + D Sbjct: 485 SLLRHDEVRTYFHEFGHVMHQICAQTD 511
>NEUL_HUMAN (Q9BYT8) Neurolysin, mitochondrial precursor (EC 3.4.24.16)| (Neurotensin endopeptidase) (Mitochondrial oligopeptidase M) (Microsomal endopeptidase) (MEP) Length = 704 Score = 81.3 bits (199), Expect = 1e-15 Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 1/147 (0%) Frame = +2 Query: 32 ESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCVKDSSX 211 E KY ID+E L+ YF + V +GL + +L G++ E A VWN V Y VKD + Sbjct: 370 ELKYSIDQEFLKEYFPIEVVTEGLLNTYQELLGLSFEQMTD-AHVWNKSVTLYTVKDKAT 428 Query: 212 SPV-AYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVGDKP 388 V FY D Y R + A + + L G+ + + VA +V N PV +P Sbjct: 429 GEVLGQFYLDLYPREGKYNHAACFGL---QPGCLLPDGSRM-MAVAALVVNFSQPVAGRP 484 Query: 389 SLMTFREVETXFHEFGHALQHMLTRQD 469 SL+ EV T FHEFGH + + + D Sbjct: 485 SLLRHDEVRTYFHEFGHVMHQICAQTD 511
>MEPD_HUMAN (P52888) Thimet oligopeptidase (EC 3.4.24.15) (Endopeptidase 24.15)| (MP78) Length = 688 Score = 80.9 bits (198), Expect = 2e-15 Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 1/151 (0%) Frame = +2 Query: 23 RLRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCVKD 202 ++ E++Y +D+ L+ YF + V GL + +L G+ G A W+ DV+ Y +D Sbjct: 342 QVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEG-ASAWHEDVRLYTARD 400 Query: 203 S-SXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVG 379 + S V FY D Y R K G A F R S ++ +A MV N P Sbjct: 401 AASGEVVGKFYLDLYPREG-KYGHA---ACFGLQPGCLRQDGSRQIAIAAMVANFTKPTA 456 Query: 380 DKPSLMTFREVETXFHEFGHALQHMLTRQDE 472 D PSL+ EVET FHEFGH + H L Q E Sbjct: 457 DAPSLLQHDEVETYFHEFGHVM-HQLCSQAE 486
>NEUL_PIG (Q02038) Neurolysin, mitochondrial precursor (EC 3.4.24.16)| (Neurotensin endopeptidase) (Mitochondrial oligopeptidase M) (Microsomal endopeptidase) (MEP) (Soluble angiotensin-binding protein) (SABP) (Endopeptidase 24.16) Length = 704 Score = 79.3 bits (194), Expect = 5e-15 Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 1/147 (0%) Frame = +2 Query: 32 ESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGLAPVWNXDVKFYCVKDSSX 211 E KY +D+E L+ YF + V +GL ++ +L G++ E A VWN V Y VKD + Sbjct: 370 ELKYSVDQEILKEYFPIEVVTEGLLNIYQELLGLSFEQVTD-AHVWNKSVTLYTVKDKAT 428 Query: 212 SPV-AYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVGDKP 388 V FY D Y R + A + + L G+ + + VA +V N P +P Sbjct: 429 GEVLGQFYLDLYPREGKYNHAACFGL---QPGCLLPDGSRM-MSVAALVVNFSQPRAGRP 484 Query: 389 SLMTFREVETXFHEFGHALQHMLTRQD 469 SL+ EV T FHEFGH + + + D Sbjct: 485 SLLRHDEVRTYFHEFGHVMHQICAQTD 511
>PMIP_RAT (Q01992) Mitochondrial intermediate peptidase, mitochondrial| precursor (EC 3.4.24.59) (MIP) Length = 710 Score = 65.9 bits (159), Expect = 5e-11 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Frame = +2 Query: 26 LRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAXGL-APVWNXDVKFYCVKD 202 +R +Y+I+ P+ +L M+GL L N+L G+T+ A VW DV+ V Sbjct: 362 IRAERYNIEPSLYCPFLSLGACMEGLNVLFNRLLGVTLYAEQPFKGEVWCIDVRKLAVVH 421 Query: 203 SSXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVGD 382 S + Y Y D + R ++ + + R + S +LPV ++ N D Sbjct: 422 ESEGLLGYIYCDFFQRANKPQQDCHFTIRGGRL----KEDGSYQLPVVVLMLNLPHASRD 477 Query: 383 KPSLMTFREVETXFHEFGHALQHMLTR 463 P+L+T +E FHE GHA+ ML R Sbjct: 478 FPTLLTPGMMENLFHEMGHAMHSMLGR 504
>PMIP_HUMAN (Q99797) Mitochondrial intermediate peptidase, mitochondrial| precursor (EC 3.4.24.59) (MIP) Length = 713 Score = 64.3 bits (155), Expect = 2e-10 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 1/147 (0%) Frame = +2 Query: 26 LRESKYDIDEEGLRPYFALPKVMDGLFSLANKLXGITVEAAX-GLAPVWNXDVKFYCVKD 202 +R +Y+I+ P+F+L M+GL L N+L GI++ A VW+ DV+ V Sbjct: 365 IRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSEDVRKLAVVH 424 Query: 203 SSXSPVAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVGD 382 S + Y Y D + R + + R + +LP+ ++ N Sbjct: 425 ESEGLLGYIYCDFFQRADKPHQDCHFTIRGGRL----KEDGDYQLPLVVLMLNLPRSSRS 480 Query: 383 KPSLMTFREVETXFHEFGHALQHMLTR 463 P+L+T +E FHE GHA+ ML R Sbjct: 481 SPTLLTPGMMENLFHEMGHAMHSMLGR 507
>PRTD_YEAST (P25375) Saccharolysin (EC 3.4.24.37) (Protease D) (Proteinase| yscD) (Oligopeptidase YSCD) Length = 712 Score = 57.8 bits (138), Expect = 1e-08 Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Frame = +2 Query: 41 YDIDEEGLRPYFALPKVMDGLFSLANKLXGIT-VEAAXGL-APVWNXDVKFYCV--KDSS 208 +++D E + YF L + G+ + L + +E VW+ DVK V D Sbjct: 371 FNVDLEKISEYFPLEATITGMLEIYETLFNLKFIETKDSQNKSVWHDDVKQIAVWNMDDP 430 Query: 209 XSP--VAYFYFDPYSRPSEKRGGAWMNVXFSRXXVLARHGASVRLPVAHMVCNQMPPVGD 382 SP V + YFD + P + + G N S ++ S PV +VCN D Sbjct: 431 KSPNFVGWIYFDLH--PRDGKYGHAANFGLSSSFMIDDTTRSY--PVTALVCNFSKSTKD 486 Query: 383 KPSLMTFREVETXFHEFGHALQHMLTRQDE 472 KPSL+ E+ T FHE GH + ++ + E Sbjct: 487 KPSLLKHNEIVTFFHELGHGIHDLVGQNKE 516
>PMIP_SCHPO (Q10415) Probable mitochondrial intermediate peptidase,| mitochondrial precursor (EC 3.4.24.59) (MIP) Length = 762 Score = 57.4 bits (137), Expect = 2e-08 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%) Frame = +2 Query: 65 RPYFALPKVMDGLFSLANKLXGIT-VEAAXGLAPVWNXDVKFYCVKDSSXSPVAYFYFDP 241 R +F++ V+ GL L + L G+ V A VW+ DV V + + + YFD Sbjct: 405 RRFFSVGTVIQGLSRLFSSLYGLRFVPADISPGEVWHPDVNKVNVYNENDHVMGVIYFDL 464 Query: 242 YSRPSEKRGGAWMNVXFSRXXVLARHGASVRL------------------PVAHMVCNQM 367 ++R + G A + SR L S+ L PV ++CN + Sbjct: 465 FARTGKTDGAAHFTIRSSRELDLTSFDDSISLGFDDATNIRVKDNKRYQIPVISLLCNFV 524 Query: 368 PPVGDKPSLMTFREVETXFHEFGHALQHML 457 G P+ + +V+T FHE GHA+ +L Sbjct: 525 RSSGMDPTFLDLWDVKTLFHEMGHAMHSIL 554
>PMIP_YEAST (P35999) Mitochondrial intermediate peptidase, mitochondrial| precursor (EC 3.4.24.59) (MIP) Length = 772 Score = 57.0 bits (136), Expect = 2e-08 Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 16/147 (10%) Frame = +2 Query: 71 YFALPKVMDGLFSLANKLXGITVEAA-XGLAPVWNXDVKFYCVKDSSXSPVAYFYFDPYS 247 YF L V+ GL L ++ GI +E A W+ DV+ V + Y D + Sbjct: 424 YFTLGNVIQGLSDLFQQIYGIRLEPAITDEGETWSPDVRRLNVISEEEGIIGIIYCDLFE 483 Query: 248 RPSEKRGGAWMNVXFSRXXVLAR------------HGASVRLPVAHMVCNQMPP-VGDKP 388 R + A V SR + G +LPV +VCN P + K Sbjct: 484 RNGKTSNPAHFTVCCSRQIYPSETDFSTIQVGENPDGTYFQLPVISLVCNFSPILIASKK 543 Query: 389 SL--MTFREVETXFHEFGHALQHMLTR 463 SL + EVET FHE GHA+ ML R Sbjct: 544 SLCFLQLSEVETLFHEMGHAMHSMLGR 570
>PMIP_SCHCO (P37932) Mitochondrial intermediate peptidase, mitochondrial| precursor (EC 3.4.24.59) (MIP) Length = 775 Score = 37.4 bits (85), Expect = 0.020 Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 34/168 (20%) Frame = +2 Query: 68 PYFALPKVMDGLFSLANKLXGITVEAAXGLA-PVWNXDVKFYCVKDSSXSPVAYFYFDPY 244 P V+ GL L L GI + +A VW+ DV V D + Y D + Sbjct: 407 PRLTFGTVLMGLSRLFRHLYGIHLRPVKPIAGEVWHSDVHKLEVVDEERGVIGLIYADVF 466 Query: 245 SRPSEKRGGAWMNVXFSRXX----VLARHGASVRL------------------------- 337 +R + G A V SR V + R+ Sbjct: 467 ARRGKASGAAHYTVRCSRRTDDDDVQGDNDELTRMYPDLIKQSEEFEAVGRGPIPGLPGT 526 Query: 338 ---PVAHMVCN-QMPPVGDKPSLMTFREVETXFHEFGHALQHMLTRQD 469 P+ ++C P +G +++ + EV T FHE GHA+ M+ R + Sbjct: 527 YQQPLVVLLCEFARPSLG--AAVLEWHEVMTLFHEMGHAMHSMIGRTE 572
>SIX3_MOUSE (Q62233) Homeobox protein SIX3 (Sine oculis homeobox homolog 3)| Length = 333 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFYF-DPYSRPSEKR 265 +W+ + K +C K+ + S + +Y DPY PS+KR Sbjct: 204 IWDGEQKTHCFKERTRSLLREWYLQDPYPNPSKKR 238
>SIX3_HUMAN (O95343) Homeobox protein SIX3 (Sine oculis homeobox homolog 3)| Length = 332 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFYF-DPYSRPSEKR 265 +W+ + K +C K+ + S + +Y DPY PS+KR Sbjct: 203 IWDGEQKTHCFKERTRSLLREWYLQDPYPNPSKKR 237
>SIX3_CHICK (O42406) Homeobox protein SIX3 (Sine oculis homeobox homolog 3)| (CSIX3) Length = 314 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFYF-DPYSRPSEKR 265 +W+ + K +C K+ + S + +Y DPY PS+KR Sbjct: 185 IWDGEQKTHCFKERTRSLLREWYLQDPYPNPSKKR 219
>SIX6_HUMAN (O95475) Homeobox protein SIX6 (Sine oculis homeobox homolog 6)| (Optic homeobox 2) (Homeodomain protein OPTX2) Length = 246 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFYF-DPYSRPSEKR 265 +W+ + K +C K+ + + + +Y DPY PS+KR Sbjct: 125 IWDGEQKTHCFKERTRNLLREWYLQDPYPNPSKKR 159
>SIX2_HUMAN (Q9NPC8) Homeobox protein SIX2 (Sine oculis homeobox homolog 2)| Length = 291 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFY-FDPYSRPSEKR 265 +W+ + YC K+ S S + +Y +PY P EKR Sbjct: 121 IWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKR 155
>SIX2_MOUSE (Q62232) Homeobox protein SIX2 (Sine oculis homeobox homolog 2)| Length = 296 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFY-FDPYSRPSEKR 265 +W+ + YC K+ S S + +Y +PY P EKR Sbjct: 121 IWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKR 155
>SIX6_MOUSE (Q9QZ28) Homeobox protein SIX6 (Sine oculis homeobox homolog 6)| (Optic homeobox 2) (Six9 protein) Length = 246 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFYF-DPYSRPSEKR 265 +W+ + K +C K+ + + +Y DPY PS+KR Sbjct: 125 IWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKR 159
>SIX6_CHICK (O93307) Homeobox protein SIX6 (Sine oculis homeobox homolog 6)| (Optic homeobox 2) (Six9 protein) Length = 246 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFYF-DPYSRPSEKR 265 +W+ + K +C K+ + + +Y DPY PS+KR Sbjct: 125 IWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKR 159
>SO_DROME (Q27350) Protein sine oculis| Length = 416 Score = 29.3 bits (64), Expect = 5.4 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +2 Query: 164 VWNXDVKFYCVKDSSXSPVAYFY-FDPYSRPSEKR 265 +W+ + YC K+ S S + +Y +PY P EKR Sbjct: 215 IWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKR 249
>NCAP_IBVM (Q82616) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -1 Query: 351 IWATGSLTEAPWRASTLXREKXTFIQAPPRFSDG 250 +W G + +R++ R+ F Q P RFSDG Sbjct: 114 VWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDG 147
>NCAP_IBVH5 (Q98Y32) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -1 Query: 351 IWATGSLTEAPWRASTLXREKXTFIQAPPRFSDG 250 +W G + +R++ R+ F Q P RFSDG Sbjct: 114 VWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDG 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,614,413 Number of Sequences: 219361 Number of extensions: 1080157 Number of successful extensions: 2530 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2497 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
