>gb|AY005474.1| Triticum aestivum inducible phenylalanine ammonia-lyase mRNA, partial
            cds
          Length = 1933

 Score = 81.8 bits (41), Expect = 2e-13
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                    
Query: 5    gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
            |||||||||||||| |||||||| ||||| |||||||| |||||| ||||||||||
Sbjct: 1104 gatgcaggtggccaagaagaccctgagcatgaacaacatgggcggcctccacatcg 1159

>ref|XM_466845.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2369

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 5    gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
            |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 1775 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 1830

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 5        gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
                |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 25004606 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 25004551

>dbj|AP005000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0042D01
          Length = 148305

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 5     gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
             |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 17594 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 17539

>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1215B07
          Length = 165957

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 5      gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
              |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 165889 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 165834

>dbj|AK120127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026F02, full
            insert sequence
          Length = 2594

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 5    gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
            |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 1775 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 1830

>emb|Z15085.1|OSGP28G O.sativa GP28 gene (partial)
          Length = 4843

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 5    gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
            |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 4204 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 4259

>dbj|AK065208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F15, full
            insert sequence
          Length = 1835

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 5    gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
            |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 1016 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 1071

>dbj|AK061959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G01, full
           insert sequence
          Length = 1589

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 5   gatgcaggtggccangaagacccngagcangaacaacangggcggnctccacatcg 60
           |||||||||||||| |||  ||| ||||| |||| ||| |||||| ||||||||||
Sbjct: 732 gatgcaggtggccaagaaatccctgagcatgaaccacatgggcggcctccacatcg 787

>gb|AY104679.1| Zea mays PCO142078 mRNA sequence
          Length = 1864

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 41/50 (82%)
 Strand = Plus / Plus

                                                              
Query: 8    gcaggtggccangaagacccngagcangaacaacangggcggnctccaca 57
            ||||||||||| |||| ||| ||||  ||||  || |||||| |||||||
Sbjct: 1044 gcaggtggccaagaagtccctgagcctgaacgccaggggcgggctccaca 1093

>gb|AC167245.2| Mus musculus BAC clone RP23-421F2 from chromosome 19, complete sequence
          Length = 198219

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     gcgagatgcaggtggcca 18
             ||||||||||||||||||
Sbjct: 89642 gcgagatgcaggtggcca 89659

>gb|AC123744.8| Mus musculus chromosome 7, clone RP24-120F8, complete sequence
          Length = 160977

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 7     tgcaggtggccangaagaccc 27
             |||||||||||| ||||||||
Sbjct: 88497 tgcaggtggccaggaagaccc 88517

>gb|AC164422.2| Mus musculus chromosome 19, clone RP23-407G6, complete sequence
          Length = 212046

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     gcgagatgcaggtggcca 18
             ||||||||||||||||||
Sbjct: 83252 gcgagatgcaggtggcca 83269

>gb|M96376.1|RATNIIAA Rattus norvegicus neurexin II-alpha major (non-processed) and minor
           (alternatively spliced) mRNAs, complete cds
          Length = 6436

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 641 gcgagatgcaggtggcca 658

>ref|XM_617993.2| PREDICTED: Bos taurus similar to neurexin II (LOC537808), mRNA
          Length = 4981

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 722 gcgagatgcaggtggcca 739

>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete
             sequence
          Length = 185010

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     gcgagatgcaggtggcca 18
             ||||||||||||||||||
Sbjct: 91218 gcgagatgcaggtggcca 91235

>ref|NM_020253.2| Mus musculus neurexin II (Nrxn2), mRNA
          Length = 5656

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 458 gcgagatgcaggtggcca 475

>ref|NM_138732.1| Homo sapiens neurexin 2 (NRXN2), transcript variant alpha-2, mRNA
          Length = 6390

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 864 gcgagatgcaggtggcca 881

>ref|NM_015080.2| Homo sapiens neurexin 2 (NRXN2), transcript variant alpha-1, mRNA
          Length = 6616

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 864 gcgagatgcaggtggcca 881

>ref|XM_978630.1| PREDICTED: Mus musculus neurexin II (Nrxn2), mRNA
          Length = 5070

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 458 gcgagatgcaggtggcca 475

>ref|XM_489806.3| PREDICTED: Mus musculus neurexin II (Nrxn2), mRNA
          Length = 1631

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 913 gcgagatgcaggtggcca 930

>gb|AC006956.16| Mus musculus Chromosome 19 BAC Clone 7d23, complete sequence
          Length = 132397

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     gcgagatgcaggtggcca 18
             ||||||||||||||||||
Sbjct: 27818 gcgagatgcaggtggcca 27801

>gb|AC163286.4| Mus musculus BAC clone RP23-334L22 from chromosome 12, complete
            sequence
          Length = 239973

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    gcgagatgcaggtggcca 18
            ||||||||||||||||||
Sbjct: 8498 gcgagatgcaggtggcca 8481

>dbj|AK147295.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1009M01 product:neurexin II, full insert
           sequence
          Length = 6592

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 839 gcgagatgcaggtggcca 856

>dbj|AK162611.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630059J22 product:neurexin II,
           full insert sequence
          Length = 4457

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 905 gcgagatgcaggtggcca 922

>dbj|AK147665.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
           full-length enriched library, clone:M5C1105E16
           product:neurexin II, full insert sequence
          Length = 6566

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 839 gcgagatgcaggtggcca 856

>gb|AF424846.1|AF424846 Macaca mulatta neurexin 2 alpha mRNA, partial cds
          Length = 498

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 394 gcgagatgcaggtggcca 411

>ref|NM_053846.1| Rattus norvegicus neurexin 2 (Nrxn2), mRNA
          Length = 6436

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 641 gcgagatgcaggtggcca 658

>dbj|AK084612.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330021H07 product:unclassifiable, full
           insert sequence
          Length = 1367

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 7   tgcaggtggccangaagaccc 27
           |||||||||||| ||||||||
Sbjct: 487 tgcaggtggccaggaagaccc 507

>gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141J21 containing NRXN2 (NRXN2)
            gene, partial cds; and RST and OAT4 genes, complete cds,
            complete sequence
          Length = 170114

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1    gcgagatgcaggtggcca 18
            ||||||||||||||||||
Sbjct: 4535 gcgagatgcaggtggcca 4552

>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence
          Length = 203300

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     gcgagatgcaggtggcca 18
             ||||||||||||||||||
Sbjct: 64893 gcgagatgcaggtggcca 64876

>gb|AC139993.16| Mus musculus chromosome 12, clone RP23-67O10, complete sequence
          Length = 239577

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      gcgagatgcaggtggcca 18
              ||||||||||||||||||
Sbjct: 150803 gcgagatgcaggtggcca 150786

>ref|XM_579580.1| PREDICTED: Rattus norvegicus hypothetical gene supported by
           NM_053846 (LOC497738), mRNA
          Length = 6409

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 636 gcgagatgcaggtggcca 653

>dbj|AK129239.1| Mus musculus mRNA for mKIAA0921 protein
          Length = 5118

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 877 gcgagatgcaggtggcca 894

>dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-727K3, complete
              sequence
          Length = 160739

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      gcgagatgcaggtggcca 18
              ||||||||||||||||||
Sbjct: 156205 gcgagatgcaggtggcca 156188

>dbj|AB035266.1| Homo sapiens mRNA for neurexin II, complete cds
          Length = 6291

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 539 gcgagatgcaggtggcca 556

>dbj|AB023138.2| Homo sapiens mRNA for KIAA0921 protein, partial cds
          Length = 5502

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   gcgagatgcaggtggcca 18
           ||||||||||||||||||
Sbjct: 864 gcgagatgcaggtggcca 881


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,543
Number of Sequences: 3902068
Number of extensions: 73543
Number of successful extensions: 3817
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3774
Number of HSP's gapped (non-prelim): 43
length of query: 60
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 39
effective length of database: 17,151,101,840
effective search space: 668892971760
effective search space used: 668892971760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)