Clone Information

BLAST Search Result

Clone Name	bags7e22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SRPR_MOUSE (Q9DBG7) Signal recognition particle receptor alpha s...	132	2e-31
2	SRPR_HUMAN (P08240) Signal recognition particle receptor alpha s...	132	2e-31
3	SRPR_DROME (Q9U5L1) Signal recognition particle receptor alpha s...	131	3e-31
4	SRPR_CANFA (P06625) Signal recognition particle receptor alpha s...	127	7e-30
5	SRPR_YEAST (P32916) Signal recognition particle receptor alpha s...	100	9e-22
6	Y291_METJA (Q57739) Probable signal recognition particle protein...	72	4e-13
7	DOCK_SULAC (P27414) Probable signal recognition particle protein...	66	2e-11
8	FTSY_ECOLI (P10121) Cell division protein ftsY	48	7e-06
9	FTSY_BACSU (P51835) Cell division protein ftsY homolog	45	3e-05
10	FTSY_HAEIN (P44870) Cell division protein ftsY homolog	45	4e-05
11	FTSY_MYCTU (P66842) Cell division protein ftsY homolog	44	1e-04
12	FTSY_MYCBO (P66843) Cell division protein ftsY homolog	44	1e-04
13	SRP54_PONPY (Q5R4R6) Signal recognition particle 54 kDa protein ...	44	1e-04
14	SRP54_MOUSE (P14576) Signal recognition particle 54 kDa protein ...	44	1e-04
15	SRP54_MACFA (Q4R965) Signal recognition particle 54 kDa protein ...	44	1e-04
16	SRP54_HUMAN (P61011) Signal recognition particle 54 kDa protein ...	44	1e-04
17	SRP54_CANFA (P61010) Signal recognition particle 54 kDa protein ...	44	1e-04
18	FTSY_BUCAI (P57137) Cell division protein ftsY homolog	44	1e-04
19	FTSY_MYCGE (P47539) Cell division protein ftsY homolog	44	1e-04
20	SRP54_RAT (Q6AYB5) Signal recognition particle 54 kDa protein (S...	43	2e-04
21	SR541_LYCES (P49971) Signal recognition particle 54 kDa protein ...	42	3e-04
22	FTSY_AQUAE (O67066) Cell division protein ftsY homolog	42	4e-04
23	FTSY_MYCPN (P75362) Cell division protein ftsY homolog	42	4e-04
24	SR542_LYCES (P49972) Signal recognition particle 54 kDa protein ...	42	4e-04
25	SRP54_YARLI (Q99150) Signal recognition particle 54 kDa protein ...	41	6e-04
26	SR541_ARATH (P37106) Signal recognition particle 54 kDa protein ...	41	6e-04
27	SRP54_GEOCY (Q8MZJ6) Signal recognition particle 54 kDa protein ...	41	6e-04
28	FTSY_NEIMC (O30391) Cell division protein ftsY homolog	41	6e-04
29	FTSY_NEIMB (P57011) Cell division protein ftsY homolog	41	6e-04
30	FTSY_NEIMA (P57010) Cell division protein ftsY homolog	41	6e-04
31	SRP54_HELPY (P56005) Signal recognition particle protein (Fifty-...	41	8e-04
32	SRP54_HELPJ (Q9ZK62) Signal recognition particle protein (Fifty-...	41	8e-04
33	SR542_HORVU (P49969) Signal recognition particle 54 kDa protein ...	41	8e-04
34	SR541_HORVU (P49968) Signal recognition particle 54 kDa protein ...	41	8e-04
35	SRP54_SCHPO (P21565) Signal recognition particle 54 kDa protein ...	41	8e-04
36	FTSY_NEIGO (P14929) Cell division protein ftsY homolog	40	0.001
37	FTSY_MYCHO (O32861) Cell division protein ftsY homolog	40	0.001
38	SR542_ARATH (P49966) Signal recognition particle 54 kDa protein ...	40	0.001
39	SRP54_ENTHI (O15821) Signal recognition particle 54 kDa protein ...	40	0.002
40	FTSY_SYNY3 (P73930) Cell division protein ftsY homolog	39	0.002
41	SR543_HORVU (P49970) Signal recognition particle 54 kDa protein ...	39	0.003
42	SRP54_METJA (Q57565) Signal recognition 54 kDa protein (SRP54)	39	0.003
43	FTSY_BUCAP (Q8KA77) Cell division protein ftsY homolog	39	0.004
44	SRP54_YEAST (P20424) Signal recognition particle 54 kDa protein ...	39	0.004
45	SRP54_BUCAI (P57473) Signal recognition particle protein (Fifty-...	38	0.005
46	SRP54_BACSU (P37105) Signal recognition particle protein (Fifty-...	38	0.007
47	FLHF_BACSU (Q01960) Flagellar biosynthesis protein flhF (Flagell...	38	0.007
48	SR543_ARATH (P49967) Signal recognition particle 54 kDa protein ...	37	0.012
49	SRP54_CANAL (O42816) Signal recognition particle 54 kDa protein ...	37	0.015
50	FLHF_AQUAE (O67266) Flagellar biosynthesis protein flhF (Flagell...	37	0.015
51	SRP54_ASPNG (Q00179) Signal recognition particle 54 kDa protein ...	37	0.015
52	SRP54_MYCGE (P47294) Signal recognition particle protein (Fifty-...	37	0.015
53	SRP54_HALSA (Q9HMN5) Signal recognition 54 kDa protein (SRP54)	36	0.020
54	SRP54_MYCMY (Q01442) Signal recognition particle protein (Fifty-...	35	0.034
55	FTSY_THEAQ (P83749) Cell division protein ftsY	35	0.034
56	SRP54_ACIAM (P70722) Signal recognition 54 kDa protein (SRP54) (...	35	0.044
57	FLHF_PSEPU (O52256) Flagellar biosynthesis protein flhF (Flagell...	35	0.044
58	SRP54_METTH (O27376) Signal recognition 54 kDa protein (SRP54)	35	0.044
59	SRP54_HALVO (Q977V2) Signal recognition 54 kDa protein (SRP54)	35	0.058
60	SRP54_ARCFU (O29633) Signal recognition 54 kDa protein (SRP54)	34	0.076
61	SRP54_PYRFU (Q8U070) Signal recognition 54 kDa protein (SRP54)	34	0.076
62	FLHF_CAMJE (O52908) Flagellar biosynthesis protein flhF (Flagell...	33	0.13
63	FTSY_RICPR (O05948) Cell division protein ftsY homolog	33	0.22
64	SRP54_METKA (Q8TUY9) Signal recognition 54 kDa protein (SRP54)	33	0.22
65	SRP54_MYCLE (O33013) Signal recognition particle protein (Fifty-...	32	0.37
66	DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-)	32	0.37
67	SRP54_AERPE (Q9YB62) Signal recognition 54 kDa protein (SRP54)	32	0.37
68	SRP54_RICCN (Q92J55) Signal recognition particle protein (Fifty-...	32	0.49
69	SRP54_PYRKO (Q5JJC8) Signal recognition 54 kDa protein (SRP54)	32	0.49
70	SRP54_SULAC (O07853) Signal recognition 54 kDa protein (SRP54)	31	0.64
71	SRP54_THEAQ (O07347) Signal recognition particle protein (Fifty-...	31	0.64
72	SRP54_MYCTU (P66844) Signal recognition particle protein (Fifty-...	30	1.1
73	SRP54_MYCBO (P66845) Signal recognition particle protein (Fifty-...	30	1.1
74	THII_METMA (Q8PU39) Probable thiamine biosynthesis protein thiI	30	1.1
75	NAS38_CAEEL (Q20942) Zinc metalloproteinase nas-38 precursor (EC...	30	1.4
76	ALBA_SULAC (Q4J973) DNA/RNA-binding protein Alba	30	1.9
77	YGN9_YEAST (P53121) Hypothetical 90.8 kDa protein in HUL5-SEC27 ...	29	2.4
78	SRP54_RICPR (Q9ZDZ0) Signal recognition particle protein (Fifty-...	29	2.4
79	ALBA1_SULSO (P60849) DNA/RNA-binding protein Alba 1 (Sso10b)	29	2.4
80	ALBA1_SULSH (P60848) DNA/RNA-binding protein Alba 1 (Ssh10b)	29	2.4
81	ALBA1_SULTO (Q971T8) DNA/RNA-binding protein Alba 1	29	3.2
82	PHYA_SORBI (P93526) Phytochrome a	28	7.1
83	PHYA1_MAIZE (P19862) Phytochrome A	28	7.1
84	AIG1_MOUSE (Q9D8B1) Androgen-induced protein 1 (AIG-1)	27	9.2
85	SRS2_SCHPO (Q10213) ATP-dependent DNA helicase srs2 (EC 3.6.1.-)	27	9.2
86	IBBWT_MEDSA (P16346) Bowman-Birk type wound-induced trypsin inhi...	27	9.2

>SRPR_MOUSE (Q9DBG7) Signal recognition particle receptor alpha subunit|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
          Length = 636

 Score =  132 bits (332), Expect = 2e-31
 Identities = 65/133 (48%), Positives = 93/133 (69%), Gaps = 13/133 (9%)
 Frame = +1

Query: 13  KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYX 192
           +LCESVA  LEGK +G+F+ ++STV+ A++E+L++IL P+R +D+LRD+  A+ R +PY 
Sbjct: 359 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV 418

Query: 193 XXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL-------- 348
                     KSTNLAK+++WLL++  SV++AACDTFR+GAVEQLRTH RRL        
Sbjct: 419 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEK 478

Query: 349 -----QIPIFEKG 372
                 + +FEKG
Sbjct: 479 HGGRTMVQLFEKG 491

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>SRPR_HUMAN (P08240) Signal recognition particle receptor alpha subunit|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
          Length = 638

 Score =  132 bits (332), Expect = 2e-31
 Identities = 65/133 (48%), Positives = 93/133 (69%), Gaps = 13/133 (9%)
 Frame = +1

Query: 13  KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYX 192
           +LCESVA  LEGK +G+F+ ++STV+ A++E+L++IL P+R +D+LRD+  A+ R +PY 
Sbjct: 361 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV 420

Query: 193 XXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL-------- 348
                     KSTNLAK+++WLL++  SV++AACDTFR+GAVEQLRTH RRL        
Sbjct: 421 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK 480

Query: 349 -----QIPIFEKG 372
                 + +FEKG
Sbjct: 481 HGGRTMVQLFEKG 493

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>SRPR_DROME (Q9U5L1) Signal recognition particle receptor alpha subunit homolog|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
           (GTP-binding protein)
          Length = 614

 Score =  131 bits (330), Expect = 3e-31
 Identities = 61/112 (54%), Positives = 86/112 (76%)
 Frame = +1

Query: 13  KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYX 192
           KLC+SVAASL+GK++G+F  I+S V+ A+ E+L+RIL+P+R IDI+RD   +K  G+PY 
Sbjct: 338 KLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYT 397

Query: 193 XXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL 348
                     KSTNLAK+ +WL++++ +V++AACDTFR+GAVEQLRTH R L
Sbjct: 398 IIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHL 449

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>SRPR_CANFA (P06625) Signal recognition particle receptor alpha subunit|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
          Length = 638

 Score =  127 bits (319), Expect = 7e-30
 Identities = 62/133 (46%), Positives = 91/133 (68%), Gaps = 13/133 (9%)
 Frame = +1

Query: 13  KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYX 192
           +LCESVA  LEGK +G+F+ ++STV+ A++E+L++IL P+R +D+LRD+  A+   +PY 
Sbjct: 361 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYV 420

Query: 193 XXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL-------- 348
                     KSTNLAK+++WLL++  SV++AACDTFR+GAVE +RTH RRL        
Sbjct: 421 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEK 480

Query: 349 -----QIPIFEKG 372
                 + +FEKG
Sbjct: 481 HAGPTMVQLFEKG 493

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>SRPR_YEAST (P32916) Signal recognition particle receptor alpha subunit homolog|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
          Length = 621

 Score =  100 bits (249), Expect = 9e-22
 Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
 Frame = +1

Query: 16  LCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAK----ERGK 183
           L + V+  L G K  ++T + +T + ++ +AL +ILTP  S+D+LR++Q+ +    E GK
Sbjct: 335 LTQQVSHDLVGSKTANWTSVENTARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGK 394

Query: 184 --PYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL 348
             PY           KSTNL+K+A+WLLQ+N  V++ ACDTFRSGAVEQLR H   L
Sbjct: 395 CDPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENL 451

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>Y291_METJA (Q57739) Probable signal recognition particle protein MJ0291|
          Length = 409

 Score = 71.6 bits (174), Expect = 4e-13
 Identities = 40/119 (33%), Positives = 65/119 (54%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPY 189
           +KL E++   L G+K+     +      A++ A+  IL+  + IDI   ++  K  GKP 
Sbjct: 145 EKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNILSQEK-IDIEEIIKKNKAEGKPT 203

Query: 190 XXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFE 366
                      K+T +AK+AY L Q   SV++AA DTFR+GA+EQL  HA+ + + + +
Sbjct: 204 VIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVGVKVIK 262

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>DOCK_SULAC (P27414) Probable signal recognition particle protein (Docking|
           protein) (P41)
          Length = 369

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 35/117 (29%), Positives = 66/117 (56%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPY 189
           +K+ E +  +L GKK+     +   V   +++++  ILT  +  D++  ++++ +  KP+
Sbjct: 117 EKILEDLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSGK--KPF 174

Query: 190 XXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
                      K+T +AKV   L ++NLS ++AA DTFR+ A EQL  HA +L++ +
Sbjct: 175 VIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQL 231

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>FTSY_ECOLI (P10121) Cell division protein ftsY|
          Length = 497

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
 Frame = +1

Query: 7   QQKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGK- 183
           +Q L   V      K + + T  +S  Q    EAL  +L       + +  +     GK 
Sbjct: 233 EQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKA 292

Query: 184 PYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
           P+           K+T + K+A    Q   SVM+AA DTFR+ AVEQL+   +R  IP+
Sbjct: 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV 351

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>FTSY_BACSU (P51835) Cell division protein ftsY homolog|
          Length = 329

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 20/49 (40%), Positives = 33/49 (67%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
           K+T + K+A+ + Q   SV++AA DTFR+GA+EQL     R  +P+ ++
Sbjct: 133 KTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQ 181

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>FTSY_HAEIN (P44870) Cell division protein ftsY homolog|
          Length = 414

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
 Frame = +1

Query: 7   QQKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKE---R 177
           +Q L   +      K + + T  +S  +    E L + L    + DIL  V    E    
Sbjct: 148 EQLLIADIGVPTTSKIIKNLTEHASRKELQDAELLYQQLKVEMA-DILEPVAQPLEIDST 206

Query: 178 GKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIP 357
            KPY           K+T + K+A        SVM+AA DTFR+ AVEQL+    R  IP
Sbjct: 207 KKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIP 266

Query: 358 I 360
           +
Sbjct: 267 V 267

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>FTSY_MYCTU (P66842) Cell division protein ftsY homolog|
          Length = 422

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 28/108 (25%), Positives = 47/108 (43%)
 Frame = +1

Query: 25  SVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXX 204
           SV + L  +      R  +  +  + + L+  L P       R ++A    G P      
Sbjct: 174 SVVSQLRSRLASGNVRTEADARAVLRDVLINELQPGMD----RSIRALPHAGHPSVLLVV 229

Query: 205 XXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL 348
                 K+T + K+A  L+     V++ A DTFR+ A +QL+T A R+
Sbjct: 230 GVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARV 277

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>FTSY_MYCBO (P66843) Cell division protein ftsY homolog|
          Length = 422

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 28/108 (25%), Positives = 47/108 (43%)
 Frame = +1

Query: 25  SVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXX 204
           SV + L  +      R  +  +  + + L+  L P       R ++A    G P      
Sbjct: 174 SVVSQLRSRLASGNVRTEADARAVLRDVLINELQPGMD----RSIRALPHAGHPSVLLVV 229

Query: 205 XXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL 348
                 K+T + K+A  L+     V++ A DTFR+ A +QL+T A R+
Sbjct: 230 GVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARV 277

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>SRP54_PONPY (Q5R4R6) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 504

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQA-AKERGKP 186
           ++L E+V ++++ +++ S       +Q A+ + L++++ P         V+A    +GK 
Sbjct: 50  KQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQ 101

Query: 187 YXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                       K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + +IP +
Sbjct: 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160

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>SRP54_MOUSE (P14576) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 504

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQA-AKERGKP 186
           ++L E+V ++++ +++ S       +Q A+ + L++++ P         V+A    +GK 
Sbjct: 50  KQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQ 101

Query: 187 YXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                       K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + +IP +
Sbjct: 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160

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>SRP54_MACFA (Q4R965) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 504

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQA-AKERGKP 186
           ++L E+V ++++ +++ S       +Q A+ + L++++ P         V+A    +GK 
Sbjct: 50  KQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQ 101

Query: 187 YXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                       K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + +IP +
Sbjct: 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160

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>SRP54_HUMAN (P61011) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 504

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQA-AKERGKP 186
           ++L E+V ++++ +++ S       +Q A+ + L++++ P         V+A    +GK 
Sbjct: 50  KQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQ 101

Query: 187 YXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                       K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + +IP +
Sbjct: 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160

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>SRP54_CANFA (P61010) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 504

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQA-AKERGKP 186
           ++L E+V ++++ +++ S       +Q A+ + L++++ P         V+A    +GK 
Sbjct: 50  KQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQ 101

Query: 187 YXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                       K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + +IP +
Sbjct: 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160

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>FTSY_BUCAI (P57137) Cell division protein ftsY homolog|
          Length = 378

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +1

Query: 112 LRILTPRRSIDILRDVQAAKERGK--PYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMM 285
           L  L  R+  +IL+ V+   E     P+           K+T +AK+A        S+M+
Sbjct: 151 LYFLLKRKMFNILKKVEIPLEISSHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 210

Query: 286 AACDTFRSGAVEQLRTHARRLQIPI 360
           AA DTFR+  +EQL+T  +   IP+
Sbjct: 211 AAADTFRAAGIEQLQTLGKLNNIPV 235

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>FTSY_MYCGE (P47539) Cell division protein ftsY homolog|
          Length = 346

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
           K+T LAK+A + ++ N  V++ A DTFR+GA+EQL   A+ L   I
Sbjct: 149 KTTTLAKIADFFIKQNKRVLLVAGDTFRAGAIEQLNQWAKLLNCDI 194

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>SRP54_RAT (Q6AYB5) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 504

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQA-AKERGKP 186
           ++L E+V ++++ +++ S       +Q A+ + L++++ P         V+A    +GK 
Sbjct: 50  KQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQ 101

Query: 187 YXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                       K+T  +K+AY+  +      +   DTFR+GA +QL+ +A + +IP +
Sbjct: 102 NVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160

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>SR541_LYCES (P49971) Signal recognition particle 54 kDa protein 1 (SRP54)|
          Length = 496

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = +1

Query: 85  VQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQ 264
           +Q A+   L +IL P +    L+       +GKP            K+T   K AY   +
Sbjct: 75  IQQAVYNELCKILDPGKPAFTLK-------KGKPSVVMFVGLQGSGKTTTCTKYAYHHQK 127

Query: 265 HNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                 +   DTFR+GA +QL+ +A + +IP +
Sbjct: 128 RGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160

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>FTSY_AQUAE (O67066) Cell division protein ftsY homolog|
          Length = 461

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
           K+T + K+A+ L Q    V++ A DTFR+ A+EQL   A+R  + I +K
Sbjct: 273 KTTTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKK 321

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>FTSY_MYCPN (P75362) Cell division protein ftsY homolog|
          Length = 348

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL 348
           K+T+LAK+A  L + N  V+M A DTFR+GAV QL   A+R+
Sbjct: 149 KTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRI 190

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>SR542_LYCES (P49972) Signal recognition particle 54 kDa protein 2 (SRP54)|
          Length = 499

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 25/93 (26%), Positives = 42/93 (45%)
 Frame = +1

Query: 85  VQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQ 264
           +Q A+   L +IL P +            ++GKP            K+T   K AY+  +
Sbjct: 75  IQQAVFNELCKILDPGKP-------SFTPKKGKPSIVMFVGLQGSGKTTTCTKYAYYHQK 127

Query: 265 HNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                 +   DTFR+GA +QL+ +A + +IP +
Sbjct: 128 KGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160

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>SRP54_YARLI (Q99150) Signal recognition particle 54 kDa protein homolog (SRP54)|
          Length = 536

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
 Frame = +1

Query: 7   QQKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAK---ER 177
           +QK+  SV A+  G            +Q A+ + L+ ++    S        AAK   ++
Sbjct: 52  RQKVKNSVKATPNGASK------KKVIQKALFDELVNLVGVDESA-----ASAAKFKPQK 100

Query: 178 GKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIP 357
           GK             K+T+  K+A +  +    V +   DTFR+GA +QL+ +A + +IP
Sbjct: 101 GKSNVVMFVGLQGSGKTTSCTKLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIP 160

Query: 358 IF 363
            F
Sbjct: 161 FF 162

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>SR541_ARATH (P37106) Signal recognition particle 54 kDa protein 1 (SRP54)|
          Length = 479

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = +1

Query: 85  VQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQ 264
           ++ A+ + L R+L P +          A ++ KP            K+T   K AY+  +
Sbjct: 75  IEQAIFKELCRMLDPGKPA-------FAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQK 127

Query: 265 HNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                 +   DTFR+GA +QL+ +A + +IP +
Sbjct: 128 KGYKAALVCADTFRAGAFDQLKQNATKAKIPFY 160

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>SRP54_GEOCY (Q8MZJ6) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 499

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 26/117 (22%), Positives = 54/117 (46%)
 Frame = +1

Query: 13  KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYX 192
           KL ++V A+++ + +G+       +QT++   L ++L P   + +         +G    
Sbjct: 50  KLRQNVRAAIDFEDMGAGLSKRRIIQTSVFNELCKLLDP--GVPVWHPT-----KGHSNV 102

Query: 193 XXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                     K+T   K+AY   +      +   DTFR+GA +QL+ +A + ++P +
Sbjct: 103 IMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFY 159

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>FTSY_NEIMC (O30391) Cell division protein ftsY homolog|
          Length = 421

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 30/111 (27%), Positives = 53/111 (47%)
 Frame = +1

Query: 37  SLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXX 216
           SL+G K G+  R       A++EAL  ++ P     +L + +      +P+         
Sbjct: 184 SLKGLKDGNELR------GALKEALYDLIKPLEKPLVLPETK------EPFVIMLAGING 231

Query: 217 XXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
             K+T++ K+A +      SV++AA DTFR+ A EQL+    R  + +  +
Sbjct: 232 AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQ 282

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>FTSY_NEIMB (P57011) Cell division protein ftsY homolog|
          Length = 421

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 30/111 (27%), Positives = 53/111 (47%)
 Frame = +1

Query: 37  SLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXX 216
           SL+G K G+  R       A++EAL  ++ P     +L + +      +P+         
Sbjct: 184 SLKGLKDGNELR------GALKEALYDLIKPLEKPLVLPETK------EPFVIMLAGING 231

Query: 217 XXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
             K+T++ K+A +      SV++AA DTFR+ A EQL+    R  + +  +
Sbjct: 232 AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQ 282

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>FTSY_NEIMA (P57010) Cell division protein ftsY homolog|
          Length = 421

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 30/111 (27%), Positives = 53/111 (47%)
 Frame = +1

Query: 37  SLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXX 216
           SL+G K G+  R       A++EAL  ++ P     +L + +      +P+         
Sbjct: 184 SLKGLKDGNELR------GALKEALYDLIKPLEKPLVLPETK------EPFVIMLAGING 231

Query: 217 XXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
             K+T++ K+A +      SV++AA DTFR+ A EQL+    R  + +  +
Sbjct: 232 AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQ 282

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>SRP54_HELPY (P56005) Signal recognition particle protein (Fifty-four homolog)|
          Length = 448

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
 Frame = +1

Query: 49  KKLGSFTRISSTVQT----AMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXX 216
           KK+ S T+++   +     A+E++LL IL+ + S            +  P          
Sbjct: 51  KKVESQTKLNGIGKQQFLDALEKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQG 104

Query: 217 XXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
             K+T  AK+A++L   N  V++ ACD  R  AVEQL+    ++ + +F
Sbjct: 105 SGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF 153

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>SRP54_HELPJ (Q9ZK62) Signal recognition particle protein (Fifty-four homolog)|
          Length = 448

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 26/92 (28%), Positives = 44/92 (47%)
 Frame = +1

Query: 94  AMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNL 273
           A+E++LL IL+ + S            +  P            K+T  AK+A++L   N 
Sbjct: 70  ALEKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNK 123

Query: 274 SVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
            V++ ACD  R  AVEQL+    ++ + +F +
Sbjct: 124 KVLLCACDLQRLAAVEQLKVLGEQVGVEVFHE 155

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>SR542_HORVU (P49969) Signal recognition particle 54 kDa protein 2 (SRP54)|
          Length = 497

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 172 ERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQ 351
           ++GKP            K+T   K AY+  +      +   DTFR+GA +QL+ +A + +
Sbjct: 97  KKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAK 156

Query: 352 IPIF 363
           IP +
Sbjct: 157 IPFY 160

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>SR541_HORVU (P49968) Signal recognition particle 54 kDa protein 1 (SRP54)|
          Length = 497

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 172 ERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQ 351
           ++GKP            K+T   K AY+  +      +   DTFR+GA +QL+ +A + +
Sbjct: 97  KKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAK 156

Query: 352 IPIF 363
           IP +
Sbjct: 157 IPFY 160

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>SRP54_SCHPO (P21565) Signal recognition particle 54 kDa protein homolog (SRP54)|
          Length = 522

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 25/93 (26%), Positives = 46/93 (49%)
 Frame = +1

Query: 85  VQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQ 264
           VQ A+ + L  ++ P+  +D         ++G+P            K+T  +K+A    +
Sbjct: 75  VQKAVFDELCSLVDPK--VDAF-----TPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQR 127

Query: 265 HNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
             L   + A DTFR+GA +QL+ +A + ++P F
Sbjct: 128 RGLKSCLVAADTFRAGAFDQLKQNAIKARVPYF 160

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>FTSY_NEIGO (P14929) Cell division protein ftsY homolog|
          Length = 416

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 30/111 (27%), Positives = 53/111 (47%)
 Frame = +1

Query: 37  SLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXX 216
           SL+G K G+  R       A++EAL  ++ P     +L + +      +P+         
Sbjct: 180 SLKGLKDGNELR------GALKEALYDLIKPLEKPLVLPETK------EPFVIMLAGING 227

Query: 217 XXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
             K+T++ K+A +      SV++AA DTFR+ A EQL+    R  + +  +
Sbjct: 228 AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQ 278

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>FTSY_MYCHO (O32861) Cell division protein ftsY homolog|
          Length = 351

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRL 348
           K+T+++K+A  L+     V++AA DTFR+ AVEQL   A+R+
Sbjct: 158 KTTSISKIAKKLIDEGKKVLIAAGDTFRAAAVEQLEIWAKRV 199

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>SR542_ARATH (P49966) Signal recognition particle 54 kDa protein 2 (SRP54)|
          Length = 495

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = +1

Query: 85  VQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQ 264
           ++ A+   L ++L P +S         A ++ KP            K+T   K AY+  +
Sbjct: 75  IEQAIFSELCKMLDPGKSA-------FAPKKAKPRVVMFVGLQGSGKTTTCTKYAYYHQK 127

Query: 265 HNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                 +   DTFR+GA +QL+ +A + +IP +
Sbjct: 128 KGYKPALVCADTFRAGAFDQLKQNATKSKIPYY 160

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>SRP54_ENTHI (O15821) Signal recognition particle 54 kDa protein (SRP54)|
          Length = 487

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +1

Query: 85  VQTAMEEALLRILTPRRSIDILRDVQAAK-ERGKPYXXXXXXXXXXXKSTNLAKVAYWLL 261
           ++ ++ E L+ ++ P+         +A K ++GK             K+T + K+A +  
Sbjct: 75  IKDSVFEELINLVDPK--------TEAFKPKKGKTCVLMMVGLQGAGKTTTITKLALYYK 126

Query: 262 QHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                  +   DTFR+GA EQL+ +A+R  +P F
Sbjct: 127 NRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFF 160

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>FTSY_SYNY3 (P73930) Cell division protein ftsY homolog|
          Length = 504

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
           K+T + K+A+   Q     ++AA DTFR+ AVEQ++    R  +P+
Sbjct: 314 KTTTIGKLAFMAKQSGYDCVIAAADTFRAAAVEQVKVWGERSGVPV 359

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>SR543_HORVU (P49970) Signal recognition particle 54 kDa protein 3 (SRP54)|
          Length = 493

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 172 ERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQ 351
           ++GKP            K+T   K A++  +      +   DTFR+GA +QL+ +A + +
Sbjct: 96  KKGKPNVVMFVGLQGSGKTTTCTKYAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAK 155

Query: 352 IPIF 363
           IP +
Sbjct: 156 IPFY 159

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>SRP54_METJA (Q57565) Signal recognition 54 kDa protein (SRP54)|
          Length = 451

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T  AK+A ++ +  L   + A DT+R  A EQL+  A ++ +PI+
Sbjct: 113 KTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY 159

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>FTSY_BUCAP (Q8KA77) Cell division protein ftsY homolog|
          Length = 351

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 369
           K+T ++K+A        SVM+AA DTFR+  +EQL+   +R  IP+  +
Sbjct: 162 KTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKRNNIPVISQ 210

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>SRP54_YEAST (P20424) Signal recognition particle 54 kDa protein homolog (SRP54)|
          Length = 541

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T+  K+A +  +    V +   DTFR+GA +QL+ +A R +IP +
Sbjct: 122 KTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFY 168

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>SRP54_BUCAI (P57473) Signal recognition particle protein (Fifty-four homolog)|
          Length = 451

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 16/49 (32%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = +1

Query: 223 KSTNLAKVAYWLL-QHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFE 366
           K+T+LAK+  W+  ++   +++ + DT+R+ A+EQL+  + +++I  FE
Sbjct: 113 KTTSLAKLGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFE 161

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>SRP54_BACSU (P37105) Signal recognition particle protein (Fifty-four homolog)|
          Length = 446

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQ-HNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKG 372
           K+T   K+A  L + HN   M+ A D +R  A++QL T  ++L +P+F  G
Sbjct: 114 KTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLG 164

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>FLHF_BACSU (Q01960) Flagellar biosynthesis protein flhF (Flagella-associated|
           GTP-binding protein)
          Length = 366

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 223 KSTNLAKVA-YWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
           K+T LAK+A   +L+ +  +     DT+R  AVEQL+T+A  LQ P+
Sbjct: 188 KTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL 234

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>SR543_ARATH (P49967) Signal recognition particle 54 kDa protein 3 (SRP54)|
          Length = 495

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T   K AY+  +      +   DTFR+GA +QL+ +A + +IP +
Sbjct: 114 KTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFY 160

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>SRP54_CANAL (O42816) Signal recognition particle 54 kDa protein homolog|
          Length = 556

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T+  K+A +  +    V +   DTFR+GA +QL+ +A +  IP +
Sbjct: 131 KTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYY 177

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>FLHF_AQUAE (O67266) Flagellar biosynthesis protein flhF (Flagella-associated|
           GTP-binding protein)
          Length = 373

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIP 357
           K+T LAK+A+   ++   V + + D FR GA EQL+  A  L++P
Sbjct: 185 KTTTLAKLAHLFKKNKKKVGIISLDCFRVGAFEQLKAFAEVLEVP 229

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>SRP54_ASPNG (Q00179) Signal recognition particle 54 kDa protein homolog|
          Length = 534

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 25/118 (21%), Positives = 48/118 (40%)
 Frame = +1

Query: 10  QKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPY 189
           Q L +S+ +S+    L         +Q A+ + L+ ++ P              ++G+  
Sbjct: 51  QSLRKSIKSSVNFASLPPAVNKKRLIQKAVFDELVSLVDPHAE-------PFRPKKGRSN 103

Query: 190 XXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
                      K+T   K+A           +   DTFR+GA +QL+ +A + +IP +
Sbjct: 104 VIMFVGLQGAGKTTTCTKLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYY 161

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>SRP54_MYCGE (P47294) Signal recognition particle protein (Fifty-four homolog)|
          Length = 446

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +1

Query: 97  MEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWL-LQHNL 273
           ++++LL+ +     I+IL          +P            K+T   K+AYWL  ++  
Sbjct: 71  LQKSLLKTIKTEL-INILSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQ 129

Query: 274 SVMMAACDTFRSGAVEQLRTHARRLQIPIFEKG 372
             M+   D +R  A+EQL T +++     F +G
Sbjct: 130 KTMLVGLDIYRPAAIEQLETLSQQTNSVFFAQG 162

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>SRP54_HALSA (Q9HMN5) Signal recognition 54 kDa protein (SRP54)|
          Length = 460

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T  AK+A+W  +  L   +   DTFR GA EQ    A R ++  +
Sbjct: 110 KTTTAAKMAWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFY 156

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>SRP54_MYCMY (Q01442) Signal recognition particle protein (Fifty-four homolog)|
          Length = 447

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLS-VMMAACDTFRSGAVEQLRTHARRLQIPIFEKG 372
           K+T   K+AY L + N   V++   D +R GA+EQL    ++    +FEKG
Sbjct: 114 KTTTANKLAYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG 164

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>FTSY_THEAQ (P83749) Cell division protein ftsY|
          Length = 303

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 85  VQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYX-----XXXXXXXXXXKSTNLAKVA 249
           ++ A++E L+ +L P      LR +    ++ KP                 K+T +AK+ 
Sbjct: 63  LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 122

Query: 250 YWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFE 366
            +       VM  A DTFR+    QL    +RL IP+ +
Sbjct: 123 RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ 161

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>SRP54_ACIAM (P70722) Signal recognition 54 kDa protein (SRP54) (Fragment)|
          Length = 451

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 184 PYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           PY           K+T   K+AY+  +    V +   D +R  A+EQL+   +++ +P++
Sbjct: 98  PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY 157

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>FLHF_PSEPU (O52256) Flagellar biosynthesis protein flhF (Flagella-associated|
           GTP-binding protein)
          Length = 437

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +1

Query: 223 KSTNLAKVA--YWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
           K+T LAK+A  Y L     ++ + + D+FR GA EQL+T  R L +P+
Sbjct: 231 KTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPV 278

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>SRP54_METTH (O27376) Signal recognition 54 kDa protein (SRP54)|
          Length = 442

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 181 KPYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
           KPY           K+T + K+A +L +   +V +   DT+R  A+EQL+ +     + I
Sbjct: 98  KPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSI 157

Query: 361 F 363
           +
Sbjct: 158 Y 158

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>SRP54_HALVO (Q977V2) Signal recognition 54 kDa protein (SRP54)|
          Length = 465

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T  AK+A+W  +  L   +   DTFR GA +Q +    R ++  +
Sbjct: 110 KTTTSAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFY 156

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>SRP54_ARCFU (O29633) Signal recognition 54 kDa protein (SRP54)|
          Length = 433

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF-EKG 372
           K+T  AK+A +     + V + A DT+R  A EQLR  A    I  + EKG
Sbjct: 106 KTTTTAKMAKYFKDRGMKVAVVAADTWRPAAYEQLRQLAEEYGITFYGEKG 156

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>SRP54_PYRFU (Q8U070) Signal recognition 54 kDa protein (SRP54)|
          Length = 443

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 27/109 (24%), Positives = 44/109 (40%)
 Frame = +1

Query: 37  SLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXX 216
           +LE K     ++    ++   EE    + T  + I+I         + KP          
Sbjct: 60  ALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTILLMVGIQG 110

Query: 217 XXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
             K+T +AK+A +  +    V +   DT+R GA  QLR    R  I +F
Sbjct: 111 SGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159

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>FLHF_CAMJE (O52908) Flagellar biosynthesis protein flhF (Flagella-associated|
           GTP-binding protein)
          Length = 484

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 223 KSTNLAKVA--YWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFE 366
           K+T LAK+A  Y          +   DT+R GAVEQL  +A+ +++PI +
Sbjct: 295 KTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIID 344

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>FTSY_RICPR (O05948) Cell division protein ftsY homolog|
          Length = 303

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARR 345
           K+T + K++         V +AACDTFR+ A+ QL +   R
Sbjct: 114 KTTTIGKLSALYSAEGKKVAVAACDTFRAAAINQLSSWVHR 154

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>SRP54_METKA (Q8TUY9) Signal recognition 54 kDa protein (SRP54)|
          Length = 447

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 360
           K+T  AK+A +L +    V +   D +R  A EQLR  A  + +P+
Sbjct: 114 KTTTAAKLARYLQRKGYRVGLVGADPYRPAAGEQLRQLAEEVDVPV 159

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>SRP54_MYCLE (O33013) Signal recognition particle protein (Fifty-four homolog)|
          Length = 521

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T   K+A  L +   + ++ ACD  R  AV QL+    R  +P+F
Sbjct: 113 KTTLAGKLAVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159

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>DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-)|
          Length = 1097

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -3

Query: 351 LKPASMSPQLLNS--TRSEGITCCHHDTEVM 265
           ++PAS+SP + N+    S+ I+ CHHDTE M
Sbjct: 499 IEPASVSPSIGNNGFPISQDISLCHHDTEPM 529

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>SRP54_AERPE (Q9YB62) Signal recognition 54 kDa protein (SRP54)|
          Length = 441

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLR 330
           K+T   K+AY+ ++    V + + DT R GA EQL+
Sbjct: 109 KTTTAGKLAYYYVRRGYKVGLVSSDTHRPGAYEQLK 144

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>SRP54_RICCN (Q92J55) Signal recognition particle protein (Fifty-four homolog)|
          Length = 449

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQI 354
           K+T  +K+A  L   N  V++ + DT+R  A EQL   A  +QI
Sbjct: 115 KTTASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQI 158

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>SRP54_PYRKO (Q5JJC8) Signal recognition 54 kDa protein (SRP54)|
          Length = 448

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 21/88 (23%), Positives = 41/88 (46%)
 Frame = +1

Query: 100 EEALLRILTPRRSIDILRDVQAAKERGKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSV 279
           +E +++I+    +  +  + +  + + KP            K+T++AK+A +L +    V
Sbjct: 72  KEHIIKIVYEELTKFLGTEAKPLEIKHKPTVILTVGIQGSGKTTSVAKLARYLQKRGYKV 131

Query: 280 MMAACDTFRSGAVEQLRTHARRLQIPIF 363
            +   DT+R GA  QLR       I +F
Sbjct: 132 GVVCSDTWRPGAYYQLRQLLDPFGIEVF 159

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>SRP54_SULAC (O07853) Signal recognition 54 kDa protein (SRP54)|
          Length = 444

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 184 PYXXXXXXXXXXXKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           PY           K+T   K+A +  +    V + A D +R  A EQL    +++ IP++
Sbjct: 95  PYIIMLVGVQGSGKTTTSGKLALFYKKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVY 154

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>SRP54_THEAQ (O07347) Signal recognition particle protein (Fifty-four homolog)|
          Length = 429

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFE 366
           K+T  AK+A +        ++ A DT R  A EQLR    ++ +P+ E
Sbjct: 110 KTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 157

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>SRP54_MYCTU (P66844) Signal recognition particle protein (Fifty-four homolog)|
          Length = 525

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T   K+A  L     + ++ ACD  R  AV QL+    R  +P+F
Sbjct: 113 KTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159

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>SRP54_MYCBO (P66845) Signal recognition particle protein (Fifty-four homolog)|
          Length = 525

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIF 363
           K+T   K+A  L     + ++ ACD  R  AV QL+    R  +P+F
Sbjct: 113 KTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159

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>THII_METMA (Q8PU39) Probable thiamine biosynthesis protein thiI|
          Length = 405

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 186 WLATLLGSLYIP*YVNGSPWS*NAKKSLLHSCLNSRRNSCEG 61
           WL    G + IP Y N SP++ NA K   + C+   +    G
Sbjct: 213 WLMMKRGVMIIPVYCNTSPYAENAAKERAYDCIRQLQTWASG 254

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>NAS38_CAEEL (Q20942) Zinc metalloproteinase nas-38 precursor (EC 3.4.24.21)|
           (Nematode astacin 38)
          Length = 745

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 189 CRCFCWSEWXWKVYQSCKGC 248
           C C  WSEW  +  Q C GC
Sbjct: 629 CGCGAWSEWQGECSQQCGGC 648

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>ALBA_SULAC (Q4J973) DNA/RNA-binding protein Alba|
          Length = 97

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 170 LAACTSLNMSMDRLGVKMRRRASSIAV*TVEEILVKDPSFLPSRL 36
           LAA T LN  +  + +K R RA S AV TVE  +V++  FLP ++
Sbjct: 23  LAALTLLNQGVSEITIKARGRAISKAVDTVE--IVRN-RFLPDKI 64

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>YGN9_YEAST (P53121) Hypothetical 90.8 kDa protein in HUL5-SEC27 intergenic|
           region
          Length = 802

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = +2

Query: 233 ILQRLLIGFFSITSVS*WQH--------VIPSDLVLLSSCGLML-AGFRYLYLRR 370
           +L+ + IGF  +T +S W+         ++ + L +L SCGLML A +R ++  R
Sbjct: 379 LLRYIYIGFVQLTILSFWEFTERDSPAVIVIACLFILLSCGLMLWAAWRTVFFAR 433

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>SRP54_RICPR (Q9ZDZ0) Signal recognition particle protein (Fifty-four homolog)|
          Length = 449

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 223 KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQI 354
           K+T   K+A  L   N  V++ + DT+R  A EQL   A  + I
Sbjct: 115 KTTASGKLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNI 158

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>ALBA1_SULSO (P60849) DNA/RNA-binding protein Alba 1 (Sso10b)|
          Length = 96

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 170 LAACTSLNMSMDRLGVKMRRRASSIAV*TVEEILVKDPSFLPSRL 36
           LAA T LN  +  + +K R RA S AV TVE  +V++  FLP ++
Sbjct: 23  LAALTLLNQGVSEIVIKARGRAISKAVDTVE--IVRN-RFLPDKI 64

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>ALBA1_SULSH (P60848) DNA/RNA-binding protein Alba 1 (Ssh10b)|
          Length = 96

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 170 LAACTSLNMSMDRLGVKMRRRASSIAV*TVEEILVKDPSFLPSRL 36
           LAA T LN  +  + +K R RA S AV TVE  +V++  FLP ++
Sbjct: 23  LAALTLLNQGVSEIVIKARGRAISKAVDTVE--IVRN-RFLPDKI 64

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>ALBA1_SULTO (Q971T8) DNA/RNA-binding protein Alba 1|
          Length = 99

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -1

Query: 170 LAACTSLNMSMDRLGVKMRRRASSIAV*TVEEILVKDPSFLPSRL 36
           LAA T LN  +  + +K R RA S AV TVE  +V++  FLP ++
Sbjct: 25  LAALTLLNQGVSEIIIKARGRAISKAVDTVE--IVRN-RFLPDKI 66

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>PHYA_SORBI (P93526) Phytochrome a|
          Length = 1131

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 330 PQLLNSTRSEGITCCHHDTEVMLKKPISNLCKIGRLSXSIHSNKNNDI 187
           PQ     R  G+  CHH++   +  P+   C+      ++H NK  ++
Sbjct: 359 PQQQKKKRLWGLIVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFEL 406

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>PHYA1_MAIZE (P19862) Phytochrome A|
          Length = 1131

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 330 PQLLNSTRSEGITCCHHDTEVMLKKPISNLCKIGRLSXSIHSNKNNDI 187
           PQ     R  G+  CHH++   +  P+   C+      ++H NK  ++
Sbjct: 359 PQQQKKKRLWGLIVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFEL 406

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>AIG1_MOUSE (Q9D8B1) Androgen-induced protein 1 (AIG-1)|
          Length = 262

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -3

Query: 369 LLKYRYLKPASMSPQLLNSTRSEGITCCHHDTEVMLKKPISNLCK 235
           L+ + YL    ++  + ++ R++  +C    + +   KP+ NLCK
Sbjct: 206 LMNFLYLLGEVLNSYIWDTQRTKAPSCQDTQSSLSCAKPVQNLCK 250

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>SRS2_SCHPO (Q10213) ATP-dependent DNA helicase srs2 (EC 3.6.1.-)|
          Length = 887

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 327 QLLNSTRSEGITCCHHDTEVMLKKPISNLCKIGRLSXSIHSNKNNDIWLATLLGSL 160
           Q LN  ++E I     + +  LK   S LC I +L     SN ++      LLG L
Sbjct: 459 QTLNEVKNENILLSQRNDKSFLKSLKSFLCSISKLENRYLSNGHSATLSDLLLGIL 514

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>IBBWT_MEDSA (P16346) Bowman-Birk type wound-induced trypsin inhibitor|
          Length = 58

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 189 CRCFCWSEWXWKVYQSCKGCLLASSA*PQCH 281
           CRC    E     + +CK CL   S  PQCH
Sbjct: 18  CRCTDIGE---TCHSACKTCLCTKSIPPQCH 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,444,850
Number of Sequences: 219361
Number of extensions: 728009
Number of successful extensions: 1836
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1834
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result