| Clone Name | bags6p12 |
|---|---|
| Clone Library Name | barley_pub |
>FALZ_HUMAN (Q12830) Fetal Alzheimer antigen (Fetal Alz-50-reactive clone 1)| Length = 810 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Frame = +1 Query: 199 VRTSPLGKDRFYNRYWFFRREGRLFV----ENADSKEWGYYSTKEELDALIGSLNIKGIR 366 +R P+G DR +YWF R RL + EN + K+ YYSTK +L LI L+ Sbjct: 317 IRHEPIGYDRSRRKYWFLNR--RLIIEEDTENENEKKIWYYSTKVQLAELIDCLD----- 369 Query: 367 ERALKEQLDKFYDKIRSAVEKRLKEVTHQL 456 + + +L K +++R + + + ++T L Sbjct: 370 KDYWEAELCKILEEMREEIHRHM-DITEDL 398
>BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain protein 1A| (ATP-utilizing chromatin assembly and remodeling factor 1) (hACF1) (ATP-dependent chromatin remodelling protein) (Williams syndrome transcription factor-related chromatin remodeli Length = 1556 Score = 38.5 bits (88), Expect = 0.013 Identities = 21/51 (41%), Positives = 32/51 (62%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLKEVTH 450 W +YS+ E+LD LI +LN +G RE ALKE L + +I + + + +E H Sbjct: 892 WCFYSSCEQLDQLIEALNSRGHRESALKETLLQEKSRICAQLARFSEEKFH 942 Score = 35.0 bits (79), Expect = 0.14 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%) Frame = +1 Query: 175 EKELLDQ------SVRTSPLGKDRFYNRYWFFRREGRLFVE 279 EKELL++ PLG+DR Y RYW F LF+E Sbjct: 786 EKELLEKIQSAIACTNIFPLGRDRMYRRYWIFPSIPGLFIE 826
>HTPG_GLUOX (Q5FS51) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 623 Score = 36.2 bits (82), Expect = 0.064 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Frame = +1 Query: 286 DSKEWGYYSTKEELDALIGSLNIKGIRERALK-----EQLDKFY-DKIRSAVEKRLKEVT 447 D ++ YY T + LDAL S ++G R R L+ + +D F+ +++ S EK L+ VT Sbjct: 422 DGQDAIYYLTGDSLDALKSSAQLEGFRARGLEVLLLSDPVDGFWPERLSSYQEKPLRSVT 481 Query: 448 H 450 H Sbjct: 482 H 482
>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B| (Williams-Beuren syndrome chromosome region 9 protein) (WBRS9) (Williams syndrome transcription factor) (hWALP2) Length = 1483 Score = 35.8 bits (81), Expect = 0.084 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKI 411 W +++ELD L+ L+ +GIRE LKE+L+K Y I Sbjct: 991 WFLCDSQKELDELLNCLHPQGIRESQLKERLEKRYQDI 1028 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +1 Query: 199 VRTSPLGKDRFYNRYWFFRRE-GRLFVE 279 +R +P+G DR +NRYW F E LF+E Sbjct: 898 MRRTPIGTDRNHNRYWLFSDEVPGLFIE 925
>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)| Length = 1972 Score = 35.8 bits (81), Expect = 0.084 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429 W E+L AL+ L+++GIRE+AL++Q+ K D I A K Sbjct: 1522 WWRIIDPEDLKALLKVLHLRGIREKALQKQIQKHLDYITQACLK 1565 Score = 32.7 bits (73), Expect = 0.71 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +1 Query: 196 SVRTSPLGKDRFYNRYWFFRREGRLFVENADSKE 297 S+R+ G+DR+ RYW + G +FVE +S E Sbjct: 1175 SLRSVMFGQDRYRRRYWILPQCGGIFVEGMESGE 1208
>BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain 2A (Transcription| termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) Length = 1850 Score = 35.4 bits (80), Expect = 0.11 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 12/125 (9%) Frame = +1 Query: 1 AEADRGKWQQXKEMNQKNAVQDGNENVNGQLVAXXXKERKNAPPSKMGXAKLHLGRHLEK 180 AE G+ + + M + + +++ E N V + RK + L RH+EK Sbjct: 986 AEDGLGRRRSSRIMEETSGIEEEEEEENTTAV-HGRRGRKEGEIDVAASSIPELERHIEK 1044 Query: 181 ----------ELL--DQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEE 324 +LL Q +R LG+DR+ YW +FVE ++ K+E Sbjct: 1045 LSKRQLFFRKKLLHSSQMLRAVSLGQDRYRRHYWVLPYLAGIFVEGSEGSTVTEDEIKQE 1104 Query: 325 LDALI 339 ++L+ Sbjct: 1105 TESLM 1109 Score = 33.1 bits (74), Expect = 0.54 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLK----EVTHQLLVE 465 W + E LD L+ +L+ +GIRE+AL + L K D ++ + L E +E Sbjct: 1386 WWWIRDPETLDVLLKALHPRGIREKALHKHLSKHKDFLQEVCLQPLTDPIFEPNELPALE 1445 Query: 466 EAVLRRSSRVHAHPKDSPSTSFLE 537 E V+ S + + D ++E Sbjct: 1446 EGVMSWSPKEKTYETDLAVLQWVE 1469
>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription| termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3) Length = 1878 Score = 35.0 bits (79), Expect = 0.14 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLKEVTHQLLVEEAVL 477 W + E LDA++ +L+ +GIRE+AL + L+K H+ ++E L Sbjct: 1412 WWWIRDPEMLDAMLKALHPRGIREKALHKHLNK-----------------HRDFLQEVCL 1454 Query: 478 RRSSRVHAHPKDSPSTSFLEYVNTW 552 R S+ P+ P +F E + +W Sbjct: 1455 RPSADPIFEPRQLP--AFQEGIMSW 1477 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +1 Query: 178 KELL--DQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEELDAL 336 K+LL Q +R LG+DR+ RYW +FVE + K+E D+L Sbjct: 1075 KKLLHSSQMLRAVSLGQDRYRRRYWVLPYLAGIFVEGTEGNLVPEEVIKKETDSL 1129
>BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain protein 1B| (Williams-Beuren syndrome chromosome region 9 protein homolog) (WBRS9) Length = 1479 Score = 35.0 bits (79), Expect = 0.14 Identities = 16/38 (42%), Positives = 25/38 (65%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKI 411 W +++ELD L+ L+ +GIRE KE+L+K Y +I Sbjct: 991 WFLCDSQKELDELLSCLHPQGIRESQFKERLEKRYQEI 1028 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +1 Query: 199 VRTSPLGKDRFYNRYWFFRRE-GRLFVE 279 +R +P+G DR +NRYW F E LF+E Sbjct: 899 LRRTPIGTDRNHNRYWLFSNEVPGLFIE 926
>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular| matrix protein F22) Length = 2130 Score = 33.1 bits (74), Expect = 0.54 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429 W + E+L +L L+++GIRE+AL++Q+ K D I A K Sbjct: 1647 WWRITDPEDLKSLHKVLHLRGIREKALQKQIQKHMDYITLACIK 1690 Score = 33.1 bits (74), Expect = 0.54 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Frame = +1 Query: 178 KELLDQS--VRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEELDAL--IGS 345 K+L + S +R+ G+DR+ RYW + G +FVE +S E G +E + L + S Sbjct: 1286 KKLFEASHCLRSMMFGQDRYRRRYWILPQCGGIFVEGMESGE-GLEEIAKEKEKLKKVES 1344 Query: 346 LNIK 357 ++IK Sbjct: 1345 IHIK 1348
>GP5D_CHLTR (P10559) Virulence plasmid parA family protein pGP5-D (Protein P-9)| Length = 264 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 438 LQSLLHSTSYLVVELVKLFFECSLPYPFNV*R-PNERIKLFLGAIVPPLFGICILDKKPS 262 L+S++ T V+L+ F ++ R P+ +KLFL P + ICI+D PS Sbjct: 70 LKSIICETKKDSVDLIPASFLSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICIIDTPPS 129
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 30.8 bits (68), Expect = 2.7 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +1 Query: 307 YSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLKEVTHQLLVEEA 471 + T EELD +NI+ IR + K L+ FY+ + + + KE LL EA Sbjct: 166 FDTAEELD----DMNIEIIRNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEA 216
>PTN12_MOUSE (P35831) Tyrosine-protein phosphatase non-receptor type 12 (EC| 3.1.3.48) (Protein-tyrosine phosphatase P19) (P19-PTP) (MPTP-PEST) Length = 775 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 19 KWQQXKEMNQKNAVQDGNENVNGQLVAXXXKERKNAPPSK 138 K Q E++ ++DGNE G +V+ E++++PP K Sbjct: 296 KQLQLYEIHGAQKIRDGNEITTGTMVSSIDSEKQDSPPPK 335
>CMGA_HORSE (Q9XS63) Chromogranin A precursor (CgA) [Contains: Pancreastatin;| WE-14] Length = 448 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Frame = +1 Query: 346 LNIKGIRERALKEQLDKFYDKIRSAVEKR-----LKEVTHQLLVEEAVLRR--SSRVHAH 504 L ++G +ERA +++ + D++ +EK+ LKEVT + L E+A R S V + Sbjct: 82 LALQGAKERAPQQKHSRLEDELAEVLEKQNHQAELKEVTEEALSEDAAEARGDSKEVEEN 141 Query: 505 PKDS 516 +D+ Sbjct: 142 GEDA 145
>CT116_MOUSE (Q80WW9) Protein C20orf116 homolog precursor| Length = 315 Score = 30.4 bits (67), Expect = 3.5 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 6/185 (3%) Frame = +1 Query: 10 DRGKWQQXKEMNQKNAVQDGNENVNGQLVAXXXKE--RKNA---PPSKMGXAKLHLGRHL 174 D G Q + Q+ A +DG+ENV ++ +E K A P K+G KL R L Sbjct: 70 DLGSRLQAQRRAQRVAWEDGDENVGQTVIPAQEEEGIEKPAEVHPTGKIGAKKL---RKL 126 Query: 175 EKELLDQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEELDALIGSLNI 354 E++ ++ R + + RE R +E+ EW KEE Sbjct: 127 EEKQARKAQREAEEAE-----------REERKRLESQREAEW----KKEE---------- 161 Query: 355 KGIRERALKEQLDKFYDKIRSAVEKRLKEVTHQLLVEEAVLRRSSRVHAHPKDSPSTSFL 534 ER ++ K ++ ++ E+ +E L ++EA + V + S SFL Sbjct: 162 ----ERLRLKEEQKEEEERKAQEEQARREHEEYLKLKEAFVVEEEGVSETMTEEQSHSFL 217 Query: 535 -EYVN 546 E++N Sbjct: 218 TEFIN 222
>SYR_PYRKO (Q5JGH7) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 642 Score = 30.4 bits (67), Expect = 3.5 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429 WGY + KEE + + L KG++E + + Y ++ +E+ Sbjct: 182 WGYLNLKEEFERIEAELREKGLKEDFIDHVMGLLYVEVNKKLEE 225
>SYR_PYRHO (O59147) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 629 Score = 30.4 bits (67), Expect = 3.5 Identities = 11/43 (25%), Positives = 22/43 (51%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVE 426 WGY KEE + ++ L +G+++ + L Y ++ +E Sbjct: 177 WGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLE 219
>CDC25_CANAL (P43069) Cell division control protein 25| Length = 1333 Score = 30.4 bits (67), Expect = 3.5 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%) Frame = +1 Query: 34 KEMNQKNAVQDGNENVNGQLVAXXXKERKNAPPSKMGXAKLHLGRHLEKELLDQSVRTSP 213 K +N+ +G+ N QLV R+N KL + ++ D S + Sbjct: 500 KLSQDRNSEGNGDMNYINQLVYEIDNLRENVNSIVKIFLKLSANKKIKNSDYDSSDASDD 559 Query: 214 LGKDRFYNRYWFFRREGRLFVENADSKEW--GYYSTKEEL-----DALIGSLNIKGIRER 372 G+DRF + R V+ + W ++STK + D L + K I + Sbjct: 560 EGEDRFDILPQVY---PRFLVDEFNGGNWCNPFFSTKNTVLNVSGDDLKNRYHTKIIIDH 616 Query: 373 ALKEQLDKFYDKIRSAVEKRLK 438 + + L ++ DKI A E L+ Sbjct: 617 SAYDSLSQYVDKIVDACENILE 638
>SYV_HELPJ (Q9ZK61) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 872 Score = 30.0 bits (66), Expect = 4.6 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%) Frame = +1 Query: 172 LEKELLDQSVRTSPLGKDRFYNRYWFFRREG---------RLFVENADSKEWGYYSTKEE 324 +EK+LL Q V+ LG+++F + W ++ + RL V A S+ T+ Sbjct: 97 VEKQLLSQGVKKEDLGREKFIQKVWEWKEKSGGAILEQMKRLGVSTAFSR------TRFT 150 Query: 325 LDALIGSLNIKGIRERALKEQLDKFYDK 408 +D KG+ +RA+K K+Y+K Sbjct: 151 MD--------KGL-QRAVKLAFLKWYEK 169
>GP5D_CHLMU (Q46441) Virulence plasmid parA family protein pGP5-D| Length = 268 Score = 30.0 bits (66), Expect = 4.6 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 342 PNERIKLFLGAIVPPLFGICILDKKPS 262 P+ ++LFL PL+ +CI+D PS Sbjct: 107 PSSNLRLFLDEYCSPLYDVCIVDTPPS 133
>SYR_PYRAB (Q9V0V2) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 625 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +1 Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429 WGY +E+ + ++ L KGI+E + L Y ++ +E+ Sbjct: 177 WGYLKLREKFEKIMKELKEKGIKEDPIDHVLGLLYVEVNRVLEE 220
>RPOC_CAMJR (Q5HVY8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1517 Score = 30.0 bits (66), Expect = 4.6 Identities = 25/104 (24%), Positives = 40/104 (38%) Frame = +1 Query: 85 GQLVAXXXKERKNAPPSKMGXAKLHLGRHLEKELLDQSVRTSPLGKDRFYNRYWFFRREG 264 G+ V + P +++ H G +L D+ V G RFYN + +EG Sbjct: 910 GEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEG 969 Query: 265 RLFVENADSKEWGYYSTKEELDALIGSLNIKGIRERALKEQLDK 396 + V N + K + G +NI+ I E + DK Sbjct: 970 KNIVANRRNAAVLLVEPKIK-TPFKGVINIENIHEDVIVSIKDK 1012
>RPOC_CAMJE (Q9PI30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1517 Score = 30.0 bits (66), Expect = 4.6 Identities = 25/104 (24%), Positives = 40/104 (38%) Frame = +1 Query: 85 GQLVAXXXKERKNAPPSKMGXAKLHLGRHLEKELLDQSVRTSPLGKDRFYNRYWFFRREG 264 G+ V + P +++ H G +L D+ V G RFYN + +EG Sbjct: 910 GEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEG 969 Query: 265 RLFVENADSKEWGYYSTKEELDALIGSLNIKGIRERALKEQLDK 396 + V N + K + G +NI+ I E + DK Sbjct: 970 KNIVANRRNAAVLLVEPKIK-TPFKGVINIENIHEDVIVSIKDK 1012
>SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 29.3 bits (64), Expect = 7.9 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +1 Query: 172 LEKELLDQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSK 294 +EKE+L + + +G+++F R W + +E R ++ K Sbjct: 96 VEKEILKEGLNKKEMGREKFLERVWDWTKEYRERIKGQQKK 136
>MSRB_CLOPE (Q8XJZ6) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)| Length = 147 Score = 29.3 bits (64), Expect = 7.9 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = +1 Query: 205 TSPLGKDR-FYNRYWFFRREGRLFVENADSKEWGYYSTKEELDALIG-SLNIKGIRERAL 378 T G +R F N YW F EG ++V+ + +++K++ + G K I + Sbjct: 23 TQENGTERPFTNEYWDFNGEG-IYVDITTGEP--LFTSKDKFHSSCGWPAFSKPIDRSII 79 Query: 379 KEQLDKFYDKIRSAVEKRL 435 KE++DK + IR+ V +L Sbjct: 80 KEKVDKSHGMIRTEVRSKL 98 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,284,302 Number of Sequences: 219361 Number of extensions: 1523504 Number of successful extensions: 3522 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3431 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3521 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)