ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6p12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FALZ_HUMAN (Q12830) Fetal Alzheimer antigen (Fetal Alz-50-reacti... 42 0.002
2BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain ... 39 0.013
3HTPG_GLUOX (Q5FS51) Chaperone protein htpG (Heat shock protein h... 36 0.064
4BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain ... 36 0.084
5BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain ... 36 0.084
6BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain ... 35 0.11
7BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain ... 35 0.14
8BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain ... 35 0.14
9BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain ... 33 0.54
10GP5D_CHLTR (P10559) Virulence plasmid parA family protein pGP5-D... 32 1.6
11VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14... 31 2.7
12PTN12_MOUSE (P35831) Tyrosine-protein phosphatase non-receptor t... 31 2.7
13CMGA_HORSE (Q9XS63) Chromogranin A precursor (CgA) [Contains: Pa... 30 3.5
14CT116_MOUSE (Q80WW9) Protein C20orf116 homolog precursor 30 3.5
15SYR_PYRKO (Q5JGH7) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 30 3.5
16SYR_PYRHO (O59147) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 30 3.5
17CDC25_CANAL (P43069) Cell division control protein 25 30 3.5
18SYV_HELPJ (Q9ZK61) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 30 4.6
19GP5D_CHLMU (Q46441) Virulence plasmid parA family protein pGP5-D 30 4.6
20SYR_PYRAB (Q9V0V2) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 30 4.6
21RPOC_CAMJR (Q5HVY8) DNA-directed RNA polymerase beta' chain (EC ... 30 4.6
22RPOC_CAMJE (Q9PI30) DNA-directed RNA polymerase beta' chain (EC ... 30 4.6
23SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 7.9
24MSRB_CLOPE (Q8XJZ6) Peptide methionine sulfoxide reductase msrB ... 29 7.9

>FALZ_HUMAN (Q12830) Fetal Alzheimer antigen (Fetal Alz-50-reactive clone 1)|
          Length = 810

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
 Frame = +1

Query: 199 VRTSPLGKDRFYNRYWFFRREGRLFV----ENADSKEWGYYSTKEELDALIGSLNIKGIR 366
           +R  P+G DR   +YWF  R  RL +    EN + K+  YYSTK +L  LI  L+     
Sbjct: 317 IRHEPIGYDRSRRKYWFLNR--RLIIEEDTENENEKKIWYYSTKVQLAELIDCLD----- 369

Query: 367 ERALKEQLDKFYDKIRSAVEKRLKEVTHQL 456
           +   + +L K  +++R  + + + ++T  L
Sbjct: 370 KDYWEAELCKILEEMREEIHRHM-DITEDL 398



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>BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain protein 1A|
            (ATP-utilizing chromatin assembly and remodeling factor
            1) (hACF1) (ATP-dependent chromatin remodelling protein)
            (Williams syndrome transcription factor-related chromatin
            remodeli
          Length = 1556

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +1

Query: 298  WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLKEVTH 450
            W +YS+ E+LD LI +LN +G RE ALKE L +   +I + + +  +E  H
Sbjct: 892  WCFYSSCEQLDQLIEALNSRGHRESALKETLLQEKSRICAQLARFSEEKFH 942



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +1

Query: 175 EKELLDQ------SVRTSPLGKDRFYNRYWFFRREGRLFVE 279
           EKELL++           PLG+DR Y RYW F     LF+E
Sbjct: 786 EKELLEKIQSAIACTNIFPLGRDRMYRRYWIFPSIPGLFIE 826



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>HTPG_GLUOX (Q5FS51) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 623

 Score = 36.2 bits (82), Expect = 0.064
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
 Frame = +1

Query: 286 DSKEWGYYSTKEELDALIGSLNIKGIRERALK-----EQLDKFY-DKIRSAVEKRLKEVT 447
           D ++  YY T + LDAL  S  ++G R R L+     + +D F+ +++ S  EK L+ VT
Sbjct: 422 DGQDAIYYLTGDSLDALKSSAQLEGFRARGLEVLLLSDPVDGFWPERLSSYQEKPLRSVT 481

Query: 448 H 450
           H
Sbjct: 482 H 482



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>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein)
            (WBRS9) (Williams syndrome transcription factor) (hWALP2)
          Length = 1483

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +1

Query: 298  WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKI 411
            W    +++ELD L+  L+ +GIRE  LKE+L+K Y  I
Sbjct: 991  WFLCDSQKELDELLNCLHPQGIRESQLKERLEKRYQDI 1028



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 199 VRTSPLGKDRFYNRYWFFRRE-GRLFVE 279
           +R +P+G DR +NRYW F  E   LF+E
Sbjct: 898 MRRTPIGTDRNHNRYWLFSDEVPGLFIE 925



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>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)|
          Length = 1972

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +1

Query: 298  WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429
            W      E+L AL+  L+++GIRE+AL++Q+ K  D I  A  K
Sbjct: 1522 WWRIIDPEDLKALLKVLHLRGIREKALQKQIQKHLDYITQACLK 1565



 Score = 32.7 bits (73), Expect = 0.71
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 196  SVRTSPLGKDRFYNRYWFFRREGRLFVENADSKE 297
            S+R+   G+DR+  RYW   + G +FVE  +S E
Sbjct: 1175 SLRSVMFGQDRYRRRYWILPQCGGIFVEGMESGE 1208



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>BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain 2A (Transcription|
            termination factor I-interacting protein 5)
            (TTF-I-interacting protein 5) (Tip5)
          Length = 1850

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
 Frame = +1

Query: 1    AEADRGKWQQXKEMNQKNAVQDGNENVNGQLVAXXXKERKNAPPSKMGXAKLHLGRHLEK 180
            AE   G+ +  + M + + +++  E  N   V    + RK         +   L RH+EK
Sbjct: 986  AEDGLGRRRSSRIMEETSGIEEEEEEENTTAV-HGRRGRKEGEIDVAASSIPELERHIEK 1044

Query: 181  ----------ELL--DQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEE 324
                      +LL   Q +R   LG+DR+   YW       +FVE ++         K+E
Sbjct: 1045 LSKRQLFFRKKLLHSSQMLRAVSLGQDRYRRHYWVLPYLAGIFVEGSEGSTVTEDEIKQE 1104

Query: 325  LDALI 339
             ++L+
Sbjct: 1105 TESLM 1109



 Score = 33.1 bits (74), Expect = 0.54
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +1

Query: 298  WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLK----EVTHQLLVE 465
            W +    E LD L+ +L+ +GIRE+AL + L K  D ++    + L     E      +E
Sbjct: 1386 WWWIRDPETLDVLLKALHPRGIREKALHKHLSKHKDFLQEVCLQPLTDPIFEPNELPALE 1445

Query: 466  EAVLRRSSRVHAHPKDSPSTSFLE 537
            E V+  S +   +  D     ++E
Sbjct: 1446 EGVMSWSPKEKTYETDLAVLQWVE 1469



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>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription|
            termination factor I-interacting protein 5)
            (TTF-I-interacting protein 5) (Tip5) (hWALp3)
          Length = 1878

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +1

Query: 298  WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLKEVTHQLLVEEAVL 477
            W +    E LDA++ +L+ +GIRE+AL + L+K                 H+  ++E  L
Sbjct: 1412 WWWIRDPEMLDAMLKALHPRGIREKALHKHLNK-----------------HRDFLQEVCL 1454

Query: 478  RRSSRVHAHPKDSPSTSFLEYVNTW 552
            R S+     P+  P  +F E + +W
Sbjct: 1455 RPSADPIFEPRQLP--AFQEGIMSW 1477



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 178  KELL--DQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEELDAL 336
            K+LL   Q +R   LG+DR+  RYW       +FVE  +         K+E D+L
Sbjct: 1075 KKLLHSSQMLRAVSLGQDRYRRRYWVLPYLAGIFVEGTEGNLVPEEVIKKETDSL 1129



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>BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein
            homolog) (WBRS9)
          Length = 1479

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +1

Query: 298  WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKI 411
            W    +++ELD L+  L+ +GIRE   KE+L+K Y +I
Sbjct: 991  WFLCDSQKELDELLSCLHPQGIRESQFKERLEKRYQEI 1028



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 199 VRTSPLGKDRFYNRYWFFRRE-GRLFVE 279
           +R +P+G DR +NRYW F  E   LF+E
Sbjct: 899 LRRTPIGTDRNHNRYWLFSNEVPGLFIE 926



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>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular|
            matrix protein F22)
          Length = 2130

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 298  WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429
            W   +  E+L +L   L+++GIRE+AL++Q+ K  D I  A  K
Sbjct: 1647 WWRITDPEDLKSLHKVLHLRGIREKALQKQIQKHMDYITLACIK 1690



 Score = 33.1 bits (74), Expect = 0.54
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
 Frame = +1

Query: 178  KELLDQS--VRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEELDAL--IGS 345
            K+L + S  +R+   G+DR+  RYW   + G +FVE  +S E G     +E + L  + S
Sbjct: 1286 KKLFEASHCLRSMMFGQDRYRRRYWILPQCGGIFVEGMESGE-GLEEIAKEKEKLKKVES 1344

Query: 346  LNIK 357
            ++IK
Sbjct: 1345 IHIK 1348



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>GP5D_CHLTR (P10559) Virulence plasmid parA family protein pGP5-D (Protein P-9)|
          Length = 264

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 438 LQSLLHSTSYLVVELVKLFFECSLPYPFNV*R-PNERIKLFLGAIVPPLFGICILDKKPS 262
           L+S++  T    V+L+   F        ++ R P+  +KLFL     P + ICI+D  PS
Sbjct: 70  LKSIICETKKDSVDLIPASFLSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICIIDTPPS 129



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>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d|
           subunit) (Vacuolar proton pump d subunit) (V-ATPase 39
           kDa subunit) (V-ATPase subunit M39)
          Length = 345

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 307 YSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEKRLKEVTHQLLVEEA 471
           + T EELD     +NI+ IR +  K  L+ FY+ +   + +  KE    LL  EA
Sbjct: 166 FDTAEELD----DMNIEIIRNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEA 216



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>PTN12_MOUSE (P35831) Tyrosine-protein phosphatase non-receptor type 12 (EC|
           3.1.3.48) (Protein-tyrosine phosphatase P19) (P19-PTP)
           (MPTP-PEST)
          Length = 775

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 19  KWQQXKEMNQKNAVQDGNENVNGQLVAXXXKERKNAPPSK 138
           K  Q  E++    ++DGNE   G +V+    E++++PP K
Sbjct: 296 KQLQLYEIHGAQKIRDGNEITTGTMVSSIDSEKQDSPPPK 335



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>CMGA_HORSE (Q9XS63) Chromogranin A precursor (CgA) [Contains: Pancreastatin;|
           WE-14]
          Length = 448

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
 Frame = +1

Query: 346 LNIKGIRERALKEQLDKFYDKIRSAVEKR-----LKEVTHQLLVEEAVLRR--SSRVHAH 504
           L ++G +ERA +++  +  D++   +EK+     LKEVT + L E+A   R  S  V  +
Sbjct: 82  LALQGAKERAPQQKHSRLEDELAEVLEKQNHQAELKEVTEEALSEDAAEARGDSKEVEEN 141

Query: 505 PKDS 516
            +D+
Sbjct: 142 GEDA 145



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>CT116_MOUSE (Q80WW9) Protein C20orf116 homolog precursor|
          Length = 315

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 6/185 (3%)
 Frame = +1

Query: 10  DRGKWQQXKEMNQKNAVQDGNENVNGQLVAXXXKE--RKNA---PPSKMGXAKLHLGRHL 174
           D G   Q +   Q+ A +DG+ENV   ++    +E   K A   P  K+G  KL   R L
Sbjct: 70  DLGSRLQAQRRAQRVAWEDGDENVGQTVIPAQEEEGIEKPAEVHPTGKIGAKKL---RKL 126

Query: 175 EKELLDQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSKEWGYYSTKEELDALIGSLNI 354
           E++   ++ R +   +           RE R  +E+    EW     KEE          
Sbjct: 127 EEKQARKAQREAEEAE-----------REERKRLESQREAEW----KKEE---------- 161

Query: 355 KGIRERALKEQLDKFYDKIRSAVEKRLKEVTHQLLVEEAVLRRSSRVHAHPKDSPSTSFL 534
               ER   ++  K  ++ ++  E+  +E    L ++EA +     V     +  S SFL
Sbjct: 162 ----ERLRLKEEQKEEEERKAQEEQARREHEEYLKLKEAFVVEEEGVSETMTEEQSHSFL 217

Query: 535 -EYVN 546
            E++N
Sbjct: 218 TEFIN 222



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>SYR_PYRKO (Q5JGH7) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 642

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429
           WGY + KEE + +   L  KG++E  +   +   Y ++   +E+
Sbjct: 182 WGYLNLKEEFERIEAELREKGLKEDFIDHVMGLLYVEVNKKLEE 225



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>SYR_PYRHO (O59147) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 629

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVE 426
           WGY   KEE + ++  L  +G+++  +   L   Y ++   +E
Sbjct: 177 WGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLE 219



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>CDC25_CANAL (P43069) Cell division control protein 25|
          Length = 1333

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
 Frame = +1

Query: 34  KEMNQKNAVQDGNENVNGQLVAXXXKERKNAPPSKMGXAKLHLGRHLEKELLDQSVRTSP 213
           K    +N+  +G+ N   QLV      R+N         KL   + ++    D S  +  
Sbjct: 500 KLSQDRNSEGNGDMNYINQLVYEIDNLRENVNSIVKIFLKLSANKKIKNSDYDSSDASDD 559

Query: 214 LGKDRFYNRYWFFRREGRLFVENADSKEW--GYYSTKEEL-----DALIGSLNIKGIRER 372
            G+DRF      +    R  V+  +   W   ++STK  +     D L    + K I + 
Sbjct: 560 EGEDRFDILPQVY---PRFLVDEFNGGNWCNPFFSTKNTVLNVSGDDLKNRYHTKIIIDH 616

Query: 373 ALKEQLDKFYDKIRSAVEKRLK 438
           +  + L ++ DKI  A E  L+
Sbjct: 617 SAYDSLSQYVDKIVDACENILE 638



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>SYV_HELPJ (Q9ZK61) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 872

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
 Frame = +1

Query: 172 LEKELLDQSVRTSPLGKDRFYNRYWFFRREG---------RLFVENADSKEWGYYSTKEE 324
           +EK+LL Q V+   LG+++F  + W ++ +          RL V  A S+      T+  
Sbjct: 97  VEKQLLSQGVKKEDLGREKFIQKVWEWKEKSGGAILEQMKRLGVSTAFSR------TRFT 150

Query: 325 LDALIGSLNIKGIRERALKEQLDKFYDK 408
           +D        KG+ +RA+K    K+Y+K
Sbjct: 151 MD--------KGL-QRAVKLAFLKWYEK 169



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>GP5D_CHLMU (Q46441) Virulence plasmid parA family protein pGP5-D|
          Length = 268

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 342 PNERIKLFLGAIVPPLFGICILDKKPS 262
           P+  ++LFL     PL+ +CI+D  PS
Sbjct: 107 PSSNLRLFLDEYCSPLYDVCIVDTPPS 133



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>SYR_PYRAB (Q9V0V2) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 625

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 298 WGYYSTKEELDALIGSLNIKGIRERALKEQLDKFYDKIRSAVEK 429
           WGY   +E+ + ++  L  KGI+E  +   L   Y ++   +E+
Sbjct: 177 WGYLKLREKFEKIMKELKEKGIKEDPIDHVLGLLYVEVNRVLEE 220



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>RPOC_CAMJR (Q5HVY8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1517

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 25/104 (24%), Positives = 40/104 (38%)
 Frame = +1

Query: 85   GQLVAXXXKERKNAPPSKMGXAKLHLGRHLEKELLDQSVRTSPLGKDRFYNRYWFFRREG 264
            G+ V     +    P +++     H G     +L D+ V     G  RFYN   +  +EG
Sbjct: 910  GEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEG 969

Query: 265  RLFVENADSKEWGYYSTKEELDALIGSLNIKGIRERALKEQLDK 396
            +  V N  +        K +     G +NI+ I E  +    DK
Sbjct: 970  KNIVANRRNAAVLLVEPKIK-TPFKGVINIENIHEDVIVSIKDK 1012



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>RPOC_CAMJE (Q9PI30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1517

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 25/104 (24%), Positives = 40/104 (38%)
 Frame = +1

Query: 85   GQLVAXXXKERKNAPPSKMGXAKLHLGRHLEKELLDQSVRTSPLGKDRFYNRYWFFRREG 264
            G+ V     +    P +++     H G     +L D+ V     G  RFYN   +  +EG
Sbjct: 910  GEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEG 969

Query: 265  RLFVENADSKEWGYYSTKEELDALIGSLNIKGIRERALKEQLDK 396
            +  V N  +        K +     G +NI+ I E  +    DK
Sbjct: 970  KNIVANRRNAAVLLVEPKIK-TPFKGVINIENIHEDVIVSIKDK 1012



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>SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 881

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 172 LEKELLDQSVRTSPLGKDRFYNRYWFFRREGRLFVENADSK 294
           +EKE+L + +    +G+++F  R W + +E R  ++    K
Sbjct: 96  VEKEILKEGLNKKEMGREKFLERVWDWTKEYRERIKGQQKK 136



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>MSRB_CLOPE (Q8XJZ6) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)|
          Length = 147

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +1

Query: 205 TSPLGKDR-FYNRYWFFRREGRLFVENADSKEWGYYSTKEELDALIG-SLNIKGIRERAL 378
           T   G +R F N YW F  EG ++V+    +    +++K++  +  G     K I    +
Sbjct: 23  TQENGTERPFTNEYWDFNGEG-IYVDITTGEP--LFTSKDKFHSSCGWPAFSKPIDRSII 79

Query: 379 KEQLDKFYDKIRSAVEKRL 435
           KE++DK +  IR+ V  +L
Sbjct: 80  KEKVDKSHGMIRTEVRSKL 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,284,302
Number of Sequences: 219361
Number of extensions: 1523504
Number of successful extensions: 3522
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3521
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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