ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6p12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466214.1| Oryza sativa (japonica cultivar-group), mRNA 139 1e-29
2dbj|AK067393.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
4dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
6emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4,... 117 4e-23
7gb|BT018510.1| Zea mays clone EL01N0429E08.d mRNA sequence 84 6e-13
8ref|NM_120950.2| Arabidopsis thaliana unknown protein AT5G08630 ... 44 0.48
9emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.9
10gb|AC122857.2| Mus musculus BAC clone RP23-125A8 from 2, complet... 42 1.9
11gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.9
12gb|AY553878.1| Encarsia formosa vitellogenin (Vg) gene, complete... 42 1.9
13emb|BX005070.10| Zebrafish DNA sequence from clone DKEY-13B19 in... 42 1.9
14emb|AL928914.15| Mouse DNA sequence from clone RP23-399J8 on chr... 42 1.9
15gb|AC152947.1| Mus musculus 10 BAC RP23-12H20 (Roswell Park Canc... 40 7.5
16ref|NM_178952.1| Arabidopsis thaliana PPOX AT4G01690 (PPOX) tran... 40 7.5
17ref|NM_116399.2| Arabidopsis thaliana PPOX; protoporphyrinogen o... 40 7.5
18gb|BT020418.1| Arabidopsis thaliana At4g01690 mRNA, complete cds 40 7.5
19gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, c... 40 7.5
20gb|AC166161.2| Mus musculus BAC clone RP23-467M7 from chromosome... 40 7.5
21gb|AC137676.11| Mus musculus chromosome 5, clone RP23-1N19, comp... 40 7.5
22gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, c... 40 7.5
23gb|AC165313.7| Mus musculus chromosome 5, clone RP24-294J23, com... 40 7.5
24gb|AC165335.3| Mus musculus BAC clone RP24-481H19 from chromosom... 40 7.5
25emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22... 40 7.5
26gb|AC124448.4| Mus musculus BAC clone RP24-211A8 from chromosome... 40 7.5
27emb|Z27079.1|CET05G5 Caenorhabditis elegans Cosmid T05G5, comple... 40 7.5
28gb|AC126254.3| Mus musculus BAC clone RP24-132D17 from chromosom... 40 7.5
29gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, comple... 40 7.5
30gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, com... 40 7.5
31gb|AC142327.1| Pan troglodytes BAC clone RP43-22L22 from 7, comp... 40 7.5
32gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosom... 40 7.5
33emb|AL121906.18|HSDJ63M2 Human DNA sequence from clone RP1-63M2 ... 40 7.5
34gb|AC162874.2| Mus musculus chromosome 5, clone RP24-289G19, com... 40 7.5
35emb|X68384.1|CECDC2A C.elegans mRNA for p34 cdc2 homologue 40 7.5
36gb|AC160551.4| Mus musculus chromosome 5, clone RP23-296C20, com... 40 7.5
37emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, c... 40 7.5
38emb|AL606512.8| Mouse DNA sequence from clone RP23-155D19 on chr... 40 7.5
39gb|BC036635.1| Homo sapiens cDNA clone IMAGE:5296353 40 7.5
40gb|AC108450.4| Homo sapiens chromosome 15, clone RP11-153O17, co... 40 7.5
41emb|AL137577.1|HSM802327 Homo sapiens mRNA; cDNA DKFZp564M0764 (... 40 7.5
42gb|AC069360.7| Homo sapiens chromosome 11, clone CTD1-2003C8, co... 40 7.5
43gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, compl... 40 7.5
44gb|AC092783.2| Homo sapiens chromosome 1 clone RP5-827O9, comple... 40 7.5
45gb|S75262.1| ncc-1=p34cdc2 kinase [Caenorhabditis elegans, mRNA,... 40 7.5
46gb|AF386944.1|AF386944 Arabidopsis thaliana Unknown protein (T15... 40 7.5
47emb|BX640463.14| Zebrafish DNA sequence from clone DKEY-29P10 in... 40 7.5
48ref|NM_001027576.1| Caenorhabditis elegans Cyclin-Dependent Kina... 40 7.5
49emb|BX819805.1|CNS0A8JY Arabidopsis thaliana Full-length cDNA Co... 40 7.5
50emb|BX828438.1|CNS0A2WO Arabidopsis thaliana Full-length cDNA Co... 40 7.5
51emb|BX827373.1|CNS0A2TT Arabidopsis thaliana Full-length cDNA Co... 40 7.5
52emb|BX827648.1|CNS0A2R8 Arabidopsis thaliana Full-length cDNA Co... 40 7.5
53gb|AC114800.5| Homo sapiens BAC clone RP11-776M7 from 2, complet... 40 7.5
54gb|AC154536.2| Mus musculus BAC clone RP23-449K2 from chromosome... 40 7.5
55gb|BC014360.1| Homo sapiens, clone IMAGE:3930408, mRNA 40 7.5
56gb|AC116535.9| Homo sapiens chromosome 11, clone RP11-685M7, com... 40 7.5
57gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7,... 40 7.5
58emb|BX004812.8| Zebrafish DNA sequence from clone CH211-201M7 in... 40 7.5
59gb|AF129109.1|AF129109 Caenorhabditis elegans CDK1 ortholog (ncc... 40 7.5
60gb|AF104919.1|T15B16 Arabidopsis thaliana BAC T15B16 40 7.5
61gb|BT020535.1| Arabidopsis thaliana At4g01690 gene, complete cds 40 7.5
62emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chro... 40 7.5
63emb|BX005375.9| Zebrafish DNA sequence from clone CH211-207N2 in... 40 7.5
64gb|AC130723.4| Mus musculus BAC clone RP24-409P7 from 8, complet... 40 7.5
65gb|AC148012.5| Mus musculus BAC clone RP23-174D18 from 18, compl... 40 7.5
66emb|AL935055.8| Mouse DNA sequence from clone RP23-131J21 on chr... 40 7.5
67emb|AL645508.14| Mouse DNA sequence from clone RP23-170H12 on ch... 40 7.5
68dbj|D83139.1|ATHPPOX Arabidopsis thaliana mRNA for protoporphyri... 40 7.5 
>ref|XM_466214.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2425

 Score =  139 bits (70), Expect = 1e-29
 Identities = 274/342 (80%)
 Strand = Plus / Plus

                                                                        
Query: 214  cttggaaaagacagattctataacaggtattggttttttaggcgtgaaggaaggcttttt 273
            |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1689 cttggaaaagacagacactataacaggtattggtttttcaggcgtgaaggaaggcttttt 1748

                                                                        
Query: 274  gtcgagaatgcagattccaaagagtgggggtactatagcaccaaggaagagcttgatgcg 333
            || || | ||||||||| ||||| ||||| ||||| ||||| ||||||||||| |||| |
Sbjct: 1749 gttgaaagtgcagattcaaaagaatggggatactacagcactaaggaagagctcgatgtg 1808

                                                                        
Query: 334  ctcattgggtctttaaacattaaagggataagggagagagcactcaaagaacagcttgac 393
             | ||  | ||  | ||| | |||||  ||||||||||||| ||||||   ||||| |||
Sbjct: 1809 ttaatgagctcactgaacgtaaaaggtttaagggagagagctctcaaacggcagctggac 1868

                                                                        
Query: 394  aagttctacgacaagataagaagtgctgtggagaagagattgaaggaggtgacacatcag 453
            ||||| |||   |||||||| | |||| |||||||  |||  || ||  | |||||  | 
Sbjct: 1869 aagttgtacagtaagataagtaatgctctggagaaacgatcaaaagaaatcacacacaaa 1928

                                                                        
Query: 454  ttgttagttgaagaggctgtattgcggcgttcttctcgtgtacatgctcatccaaaggac 513
            |||||  ||||||||||||||||||| |||||  | ||||| |  ||||| |||| ||| 
Sbjct: 1929 ttgttgcttgaagaggctgtattgcgccgttccacacgtgtccgggctcaaccaagggat 1988

                                                      
Query: 514  agcccctctacatcattccttgagtatgtcaacacatggaag 555
            | ||| || |  ||||||||  |||||||||||| |||||||
Sbjct: 1989 aacccatccatgtcattcctgaagtatgtcaacaaatggaag 2030
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>dbj|AK067393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B07, full
            insert sequence
          Length = 2425

 Score =  139 bits (70), Expect = 1e-29
 Identities = 274/342 (80%)
 Strand = Plus / Plus

                                                                        
Query: 214  cttggaaaagacagattctataacaggtattggttttttaggcgtgaaggaaggcttttt 273
            |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1689 cttggaaaagacagacactataacaggtattggtttttcaggcgtgaaggaaggcttttt 1748

                                                                        
Query: 274  gtcgagaatgcagattccaaagagtgggggtactatagcaccaaggaagagcttgatgcg 333
            || || | ||||||||| ||||| ||||| ||||| ||||| ||||||||||| |||| |
Sbjct: 1749 gttgaaagtgcagattcaaaagaatggggatactacagcactaaggaagagctcgatgtg 1808

                                                                        
Query: 334  ctcattgggtctttaaacattaaagggataagggagagagcactcaaagaacagcttgac 393
             | ||  | ||  | ||| | |||||  ||||||||||||| ||||||   ||||| |||
Sbjct: 1809 ttaatgagctcactgaacgtaaaaggtttaagggagagagctctcaaacggcagctggac 1868

                                                                        
Query: 394  aagttctacgacaagataagaagtgctgtggagaagagattgaaggaggtgacacatcag 453
            ||||| |||   |||||||| | |||| |||||||  |||  || ||  | |||||  | 
Sbjct: 1869 aagttgtacagtaagataagtaatgctctggagaaacgatcaaaagaaatcacacacaaa 1928

                                                                        
Query: 454  ttgttagttgaagaggctgtattgcggcgttcttctcgtgtacatgctcatccaaaggac 513
            |||||  ||||||||||||||||||| |||||  | ||||| |  ||||| |||| ||| 
Sbjct: 1929 ttgttgcttgaagaggctgtattgcgccgttccacacgtgtccgggctcaaccaagggat 1988

                                                      
Query: 514  agcccctctacatcattccttgagtatgtcaacacatggaag 555
            | ||| || |  ||||||||  |||||||||||| |||||||
Sbjct: 1989 aacccatccatgtcattcctgaagtatgtcaacaaatggaag 2030
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  133 bits (67), Expect = 7e-28
 Identities = 100/111 (90%)
 Strand = Plus / Minus

                                                                            
Query: 214      cttggaaaagacagattctataacaggtattggttttttaggcgtgaaggaaggcttttt 273
                |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 21084772 cttggaaaagacagacactataacaggtattggtttttcaggcgtgaaggaaggcttttt 21084713

                                                                   
Query: 274      gtcgagaatgcagattccaaagagtgggggtactatagcaccaaggaagag 324
                || || | ||||||||| ||||| ||||| ||||| ||||| |||||||||
Sbjct: 21084712 gttgaaagtgcagattcaaaagaatggggatactacagcactaaggaagag 21084662



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 77/95 (81%)
 Strand = Plus / Minus

                                                                            
Query: 461      ttgaagaggctgtattgcggcgttcttctcgtgtacatgctcatccaaaggacagcccct 520
                ||||||||||||||||||| |||||  | ||||| |  ||||| |||| ||| | ||| |
Sbjct: 21084020 ttgaagaggctgtattgcgccgttccacacgtgtccgggctcaaccaagggataacccat 21083961

                                                   
Query: 521      ctacatcattccttgagtatgtcaacacatggaag 555
                | |  ||||||||  |||||||||||| |||||||
Sbjct: 21083960 ccatgtcattcctgaagtatgtcaacaaatggaag 21083926
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>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_F08
          Length = 105979

 Score =  133 bits (67), Expect = 7e-28
 Identities = 100/111 (90%)
 Strand = Plus / Minus

                                                                         
Query: 214   cttggaaaagacagattctataacaggtattggttttttaggcgtgaaggaaggcttttt 273
             |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 86517 cttggaaaagacagacactataacaggtattggtttttcaggcgtgaaggaaggcttttt 86458

                                                                
Query: 274   gtcgagaatgcagattccaaagagtgggggtactatagcaccaaggaagag 324
             || || | ||||||||| ||||| ||||| ||||| ||||| |||||||||
Sbjct: 86457 gttgaaagtgcagattcaaaagaatggggatactacagcactaaggaagag 86407



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 77/95 (81%)
 Strand = Plus / Minus

                                                                         
Query: 461   ttgaagaggctgtattgcggcgttcttctcgtgtacatgctcatccaaaggacagcccct 520
             ||||||||||||||||||| |||||  | ||||| |  ||||| |||| ||| | ||| |
Sbjct: 85765 ttgaagaggctgtattgcgccgttccacacgtgtccgggctcaaccaagggataacccat 85706

                                                
Query: 521   ctacatcattccttgagtatgtcaacacatggaag 555
             | |  ||||||||  |||||||||||| |||||||
Sbjct: 85705 ccatgtcattcctgaagtatgtcaacaaatggaag 85671
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 4e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                            
Query: 214      cttggaaaagacagattctataacaggtattggttttttaggcgtgaaggaaggcttttt 273
                |||||||||||||| | ||| ||||| |||||||||||||||| ||||||| | ||||||
Sbjct: 21866622 cttggaaaagacaggtactacaacagatattggttttttaggcatgaaggacgacttttt 21866563

                                                                   
Query: 274      gtcgagaatgcagattccaaagagtgggggtactatagcaccaaggaagag 324
                ||||| | ||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 21866562 gtcgaaagtgcagattccaaagaatggggttactacagcactaaggaagag 21866512



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                            
Query: 323      agcttgatgcgctcattgggtctttaaacattaaagggataagggagagagcactcaaag 382
                ||||||||||||| ||||| || |||||  ||||||| ||||||||||||||||| ||| 
Sbjct: 21866435 agcttgatgcgcttattggatcgttaaatgttaaaggcataagggagagagcactgaaac 21866376

                                   
Query: 383      aacagcttgacaagttcta 401
                  |||||||| ||||||||
Sbjct: 21866375 ggcagcttgataagttcta 21866357



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                            
Query: 464      aagaggctgtattgcggcgttcttctcgtgtacatgctcatccaaaggacagcccctcta 523
                ||||||||| | ||||||| || ||||||||||| || || |||| ||| | ||| || |
Sbjct: 21865733 aagaggctgcactgcggcgatcctctcgtgtacaggcccaaccaagggataacccttcga 21865674

                                                
Query: 524      catcattccttgagtatgtcaacacatggaag 555
                  | ||||||  |||||||||||| |||||||
Sbjct: 21865673 tgttattcctcaagtatgtcaacaaatggaag 21865642
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>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01,
             complete sequence
          Length = 127713

 Score =  117 bits (59), Expect = 4e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                         
Query: 214   cttggaaaagacagattctataacaggtattggttttttaggcgtgaaggaaggcttttt 273
             |||||||||||||| | ||| ||||| |||||||||||||||| ||||||| | ||||||
Sbjct: 51223 cttggaaaagacaggtactacaacagatattggttttttaggcatgaaggacgacttttt 51164

                                                                
Query: 274   gtcgagaatgcagattccaaagagtgggggtactatagcaccaaggaagag 324
             ||||| | ||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 51163 gtcgaaagtgcagattccaaagaatggggttactacagcactaaggaagag 51113



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                         
Query: 323   agcttgatgcgctcattgggtctttaaacattaaagggataagggagagagcactcaaag 382
             ||||||||||||| ||||| || |||||  ||||||| ||||||||||||||||| ||| 
Sbjct: 51036 agcttgatgcgcttattggatcgttaaatgttaaaggcataagggagagagcactgaaac 50977

                                
Query: 383   aacagcttgacaagttcta 401
               |||||||| ||||||||
Sbjct: 50976 ggcagcttgataagttcta 50958



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                         
Query: 464   aagaggctgtattgcggcgttcttctcgtgtacatgctcatccaaaggacagcccctcta 523
             ||||||||| | ||||||| || ||||||||||| || || |||| ||| | ||| || |
Sbjct: 50334 aagaggctgcactgcggcgatcctctcgtgtacaggcccaaccaagggataacccttcga 50275

                                             
Query: 524   catcattccttgagtatgtcaacacatggaag 555
               | ||||||  |||||||||||| |||||||
Sbjct: 50274 tgttattcctcaagtatgtcaacaaatggaag 50243
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>gb|BT018510.1| Zea mays clone EL01N0429E08.d mRNA sequence
          Length = 1467

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                       
Query: 238 aggtattggttttttaggcgtgaaggaaggctttttgtcgagaatgcagattccaaagag 297
           ||||| |||||||| | ||||||||||||||||||||| || | ||||||||||| ||| 
Sbjct: 790 aggtactggtttttcaagcgtgaaggaaggctttttgttgaaactgcagattccagagaa 849

                                         
Query: 298 tgggggtactatagcaccaaggaagagctt 327
           ||||| ||||| | ||| ||||||||||||
Sbjct: 850 tggggttactacaacactaaggaagagctt 879
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>ref|NM_120950.2| Arabidopsis thaliana unknown protein AT5G08630 mRNA, complete cds
          Length = 2562

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 271  tttgtcgagaatgcagattccaaagagtgggggtactatagcaccaaggaagagcttgat 330
            ||||| |||||| | |||||| |||| ||||| || |||| | ||||||||||||| |||
Sbjct: 2085 tttgttgagaattctgattccgaagaatggggctattataccgccaaggaagagctggat 2144

              
Query: 331  gc 332
            ||
Sbjct: 2145 gc 2146
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 317     aggaagagcttgatgcgctca 337
               |||||||||||||||||||||
Sbjct: 2627391 aggaagagcttgatgcgctca 2627371
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>gb|AC122857.2| Mus musculus BAC clone RP23-125A8 from 2, complete sequence
          Length = 221951

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 420    tgtggagaagagattgaagga 440
              |||||||||||||||||||||
Sbjct: 151182 tgtggagaagagattgaagga 151162
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 317     aggaagagcttgatgcgctca 337
               |||||||||||||||||||||
Sbjct: 2483143 aggaagagcttgatgcgctca 2483123
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>gb|AY553878.1| Encarsia formosa vitellogenin (Vg) gene, complete cds
          Length = 6654

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 33   aaaggaaatgaatcagaaaaa 53
            |||||||||||||||||||||
Sbjct: 6079 aaaggaaatgaatcagaaaaa 6099
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>emb|BX005070.10| Zebrafish DNA sequence from clone DKEY-13B19 in linkage group 17,
              complete sequence
          Length = 242955

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 311    gcaccaaggaagagcttgatg 331
              |||||||||||||||||||||
Sbjct: 232962 gcaccaaggaagagcttgatg 232942
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>emb|AL928914.15| Mouse DNA sequence from clone RP23-399J8 on chromosome 2, complete
              sequence
          Length = 199873

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 420    tgtggagaagagattgaagga 440
              |||||||||||||||||||||
Sbjct: 192740 tgtggagaagagattgaagga 192720
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>gb|AC152947.1| Mus musculus 10 BAC RP23-12H20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 222139

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   tgtggagaagagattgaagg 439
             ||||||||||||||||||||
Sbjct: 50894 tgtggagaagagattgaagg 50913
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>ref|NM_178952.1| Arabidopsis thaliana PPOX AT4G01690 (PPOX) transcript variant
           AT4G01690.2 mRNA, complete cds
          Length = 1983

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 798 aggagaggaaaaacgctccc 817
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>ref|NM_116399.2| Arabidopsis thaliana PPOX; protoporphyrinogen oxidase AT4G01690
           (PPOX) transcript variant AT4G01690.1 mRNA, complete cds
          Length = 2076

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 798 aggagaggaaaaacgctccc 817
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>gb|BT020418.1| Arabidopsis thaliana At4g01690 mRNA, complete cds
          Length = 1614

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 761 aggagaggaaaaacgctccc 780
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>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence
          Length = 190235

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    tggagaagagattgaaggag 441
              ||||||||||||||||||||
Sbjct: 117097 tggagaagagattgaaggag 117078
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>gb|AC166161.2| Mus musculus BAC clone RP23-467M7 from chromosome 17, complete sequence
          Length = 186311

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 421    gtggagaagagattgaagga 440
              ||||||||||||||||||||
Sbjct: 163682 gtggagaagagattgaagga 163663
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>gb|AC137676.11| Mus musculus chromosome 5, clone RP23-1N19, complete sequence
          Length = 187726

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   tggagaagagattgaaggag 441
             ||||||||||||||||||||
Sbjct: 89537 tggagaagagattgaaggag 89518
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>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence
          Length = 187090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ttagttgaagaggctgtatt 476
             ||||||||||||||||||||
Sbjct: 26422 ttagttgaagaggctgtatt 26403
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>gb|AC165313.7| Mus musculus chromosome 5, clone RP24-294J23, complete sequence
          Length = 137597

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   tggagaagagattgaaggag 441
             ||||||||||||||||||||
Sbjct: 83977 tggagaagagattgaaggag 83958
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>gb|AC165335.3| Mus musculus BAC clone RP24-481H19 from chromosome 5, complete sequence
          Length = 212783

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 422   tggagaagagattgaaggag 441
             ||||||||||||||||||||
Sbjct: 77187 tggagaagagattgaaggag 77206
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>emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22, complete sequence
          Length = 112797

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    tgcagattccaaagagtggg 301
              ||||||||||||||||||||
Sbjct: 103235 tgcagattccaaagagtggg 103254
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>gb|AC124448.4| Mus musculus BAC clone RP24-211A8 from chromosome 18, complete sequence
          Length = 159308

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   gaaggaggtgacacatcagt 454
             ||||||||||||||||||||
Sbjct: 98288 gaaggaggtgacacatcagt 98269
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>emb|Z27079.1|CET05G5 Caenorhabditis elegans Cosmid T05G5, complete sequence
          Length = 36180

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   tgacaagttctacgacaaga 409
             ||||||||||||||||||||
Sbjct: 19919 tgacaagttctacgacaaga 19938
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>gb|AC126254.3| Mus musculus BAC clone RP24-132D17 from chromosome 17, complete
             sequence
          Length = 167995

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 422   tggagaagagattgaaggag 441
             ||||||||||||||||||||
Sbjct: 28121 tggagaagagattgaaggag 28140
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>gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, complete sequence
          Length = 175645

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    aaaggaaatgaatcagaaaa 52
             ||||||||||||||||||||
Sbjct: 75570 aaaggaaatgaatcagaaaa 75589
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>gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, complete sequence
          Length = 205796

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    tggagaagagattgaaggag 441
              ||||||||||||||||||||
Sbjct: 163340 tggagaagagattgaaggag 163359
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>gb|AC142327.1| Pan troglodytes BAC clone RP43-22L22 from 7, complete sequence
          Length = 176446

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aaaggaaatgaatcagaaaa 52
              ||||||||||||||||||||
Sbjct: 102183 aaaggaaatgaatcagaaaa 102164
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>gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosome 13, complete
            sequence
          Length = 205783

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  ttagttgaagaggctgtatt 476
            ||||||||||||||||||||
Sbjct: 8903 ttagttgaagaggctgtatt 8922
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>emb|AL121906.18|HSDJ63M2 Human DNA sequence from clone RP1-63M2 on chromosome 20 Contains the 3'
             end of the CBFA2T2 gene for runt domain core-binding
             factor alpha subunit 2, the C20orf134 gene, the E2F1 gene
             for E2F transcription factor 1, the APBA2BP gene for
             amyloid beta (A4) precursor protein-binding family A,
             member 2 protein, the C20orf144 gene and six CpG islands,
             complete sequence
          Length = 81914

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 500   ctcatccaaaggacagcccctcta 523
             |||||||||||||||| |||||||
Sbjct: 19456 ctcatccaaaggacaggccctcta 19433
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>gb|AC162874.2| Mus musculus chromosome 5, clone RP24-289G19, complete sequence
          Length = 152182

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    tggagaagagattgaaggag 441
              ||||||||||||||||||||
Sbjct: 104639 tggagaagagattgaaggag 104658
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>emb|X68384.1|CECDC2A C.elegans mRNA for p34 cdc2 homologue
          Length = 1216

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgacaagttctacgacaaga 409
           ||||||||||||||||||||
Sbjct: 817 tgacaagttctacgacaaga 836
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>gb|AC160551.4| Mus musculus chromosome 5, clone RP23-296C20, complete sequence
          Length = 173331

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   tggagaagagattgaaggag 441
             ||||||||||||||||||||
Sbjct: 37940 tggagaagagattgaaggag 37921
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>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4
          Length = 198697

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aggagaggaaaaacgctccc 129
              ||||||||||||||||||||
Sbjct: 153573 aggagaggaaaaacgctccc 153592
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>emb|AL606512.8| Mouse DNA sequence from clone RP23-155D19 on chromosome 11, complete
              sequence
          Length = 157494

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    gtggagaagagattgaagga 440
              ||||||||||||||||||||
Sbjct: 114449 gtggagaagagattgaagga 114468
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>gb|BC036635.1| Homo sapiens cDNA clone IMAGE:5296353
          Length = 1063

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 ttgtcgagaatgcagattcc 291
           ||||||||||||||||||||
Sbjct: 71  ttgtcgagaatgcagattcc 90
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>gb|AC108450.4| Homo sapiens chromosome 15, clone RP11-153O17, complete sequence
          Length = 146943

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 426   gaagagattgaaggaggtgacaca 449
             ||||||| ||||||||||||||||
Sbjct: 46674 gaagagagtgaaggaggtgacaca 46651
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>emb|AL137577.1|HSM802327 Homo sapiens mRNA; cDNA DKFZp564M0764 (from clone DKFZp564M0764)
          Length = 1512

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 ttgtcgagaatgcagattcc 291
           ||||||||||||||||||||
Sbjct: 469 ttgtcgagaatgcagattcc 450
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>gb|AC069360.7| Homo sapiens chromosome 11, clone CTD1-2003C8, complete sequence
          Length = 124409

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ttgtcgagaatgcagattcc 291
              ||||||||||||||||||||
Sbjct: 101795 ttgtcgagaatgcagattcc 101776
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>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence
          Length = 192565

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    ctgtggagaagagattgaag 438
              ||||||||||||||||||||
Sbjct: 190096 ctgtggagaagagattgaag 190077
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>gb|AC092783.2| Homo sapiens chromosome 1 clone RP5-827O9, complete sequence
          Length = 111763

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 375   actcaaagaacagcttgacaagtt 398
             |||||||||||||||| |||||||
Sbjct: 36330 actcaaagaacagctttacaagtt 36353
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>gb|S75262.1| ncc-1=p34cdc2 kinase [Caenorhabditis elegans, mRNA, 1190 nt]
          Length = 1190

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgacaagttctacgacaaga 409
           ||||||||||||||||||||
Sbjct: 815 tgacaagttctacgacaaga 834
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>gb|AF386944.1|AF386944 Arabidopsis thaliana Unknown protein (T15B16.13) mRNA, complete cds
          Length = 1709

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 800 aggagaggaaaaacgctccc 819
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>emb|BX640463.14| Zebrafish DNA sequence from clone DKEY-29P10 in linkage group 18,
              complete sequence
          Length = 233058

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    tgggtctttaaacattaaag 358
              ||||||||||||||||||||
Sbjct: 103890 tgggtctttaaacattaaag 103871
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>ref|NM_001027576.1| Caenorhabditis elegans Cyclin-Dependent Kinase family member
           (cdk-1) (cdk-1) mRNA, complete cds
          Length = 1197

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgacaagttctacgacaaga 409
           ||||||||||||||||||||
Sbjct: 818 tgacaagttctacgacaaga 837
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>emb|BX819805.1|CNS0A8JY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS2ZG07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1695

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 788 aggagaggaaaaacgctccc 807
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>emb|BX828438.1|CNS0A2WO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH8ZD08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1689

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 795 aggagaggaaaaacgctccc 814
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>emb|BX827373.1|CNS0A2TT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS46ZB05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1704

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 789 aggagaggaaaaacgctccc 808
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>emb|BX827648.1|CNS0A2R8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS90ZA08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1646

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 750 aggagaggaaaaacgctccc 769
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>gb|AC114800.5| Homo sapiens BAC clone RP11-776M7 from 2, complete sequence
          Length = 18311

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaggaaatgaatcagaaaaa 53
            ||||||||||||||||||||
Sbjct: 9213 aaggaaatgaatcagaaaaa 9232
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>gb|AC154536.2| Mus musculus BAC clone RP23-449K2 from chromosome 17, complete
           sequence
          Length = 178521

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 gtggagaagagattgaagga 440
           ||||||||||||||||||||
Sbjct: 444 gtggagaagagattgaagga 425
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>gb|BC014360.1| Homo sapiens, clone IMAGE:3930408, mRNA
          Length = 1104

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 ttgtcgagaatgcagattcc 291
           ||||||||||||||||||||
Sbjct: 75  ttgtcgagaatgcagattcc 94
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>gb|AC116535.9| Homo sapiens chromosome 11, clone RP11-685M7, complete sequence
          Length = 192490

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ttgtcgagaatgcagattcc 291
              ||||||||||||||||||||
Sbjct: 190653 ttgtcgagaatgcagattcc 190672
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>gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   aaaggaaatgaatcagaaaa 52
            ||||||||||||||||||||
Sbjct: 8693 aaaggaaatgaatcagaaaa 8712
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>emb|BX004812.8| Zebrafish DNA sequence from clone CH211-201M7 in linkage group 25,
              complete sequence
          Length = 189554

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     aaaaggaaatgaatcagaaaaatg 55
              ||||||||||| ||||||||||||
Sbjct: 154833 aaaaggaaatggatcagaaaaatg 154856
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>gb|AF129109.1|AF129109 Caenorhabditis elegans CDK1 ortholog (ncc-1) mRNA, complete cds
          Length = 1232

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgacaagttctacgacaaga 409
           ||||||||||||||||||||
Sbjct: 833 tgacaagttctacgacaaga 852
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>gb|AF104919.1|T15B16 Arabidopsis thaliana BAC T15B16
          Length = 90596

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aggagaggaaaaacgctccc 129
             ||||||||||||||||||||
Sbjct: 40400 aggagaggaaaaacgctccc 40381
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>gb|BT020535.1| Arabidopsis thaliana At4g01690 gene, complete cds
          Length = 1661

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 780 aggagaggaaaaacgctccc 799
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>emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chromosome 16, complete
              sequence
          Length = 197249

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    tggagaagagattgaaggag 441
              ||||||||||||||||||||
Sbjct: 167358 tggagaagagattgaaggag 167339
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>emb|BX005375.9| Zebrafish DNA sequence from clone CH211-207N2 in linkage group 17,
             complete sequence
          Length = 214178

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   gcaccaaggaagagcttgat 330
             ||||||||||||||||||||
Sbjct: 58075 gcaccaaggaagagcttgat 58056
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>gb|AC130723.4| Mus musculus BAC clone RP24-409P7 from 8, complete sequence
          Length = 197951

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    tggagaagagattgaaggag 441
              ||||||||||||||||||||
Sbjct: 148089 tggagaagagattgaaggag 148070
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>gb|AC148012.5| Mus musculus BAC clone RP23-174D18 from 18, complete sequence
          Length = 226568

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 435    gaaggaggtgacacatcagt 454
              ||||||||||||||||||||
Sbjct: 214717 gaaggaggtgacacatcagt 214698
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>emb|AL935055.8| Mouse DNA sequence from clone RP23-131J21 on chromosome 2, complete
             sequence
          Length = 210691

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   gtggagaagagattgaagga 440
             ||||||||||||||||||||
Sbjct: 24110 gtggagaagagattgaagga 24129
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>emb|AL645508.14| Mouse DNA sequence from clone RP23-170H12 on chromosome 4, complete
              sequence
          Length = 207485

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    gtggagaagagattgaagga 440
              ||||||||||||||||||||
Sbjct: 115147 gtggagaagagattgaagga 115166
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>dbj|D83139.1|ATHPPOX Arabidopsis thaliana mRNA for protoporphyrinogen oxidase, complete
           cds
          Length = 1614

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 aggagaggaaaaacgctccc 129
           ||||||||||||||||||||
Sbjct: 761 aggagaggaaaaacgctccc 780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,830,069
Number of Sequences: 3902068
Number of extensions: 4830069
Number of successful extensions: 91458
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91251
Number of HSP's gapped (non-prelim): 205
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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