ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470037.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-05
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 2e-05
3gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 54 2e-05
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-05
5dbj|AK064984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-05
6gb|AY104047.1| Zea mays PCO131880 mRNA sequence 52 9e-05
7gb|BT016220.1| Zea mays clone Contig53 mRNA sequence 42 0.082
8gb|AY104097.1| Zea mays PCO131882 mRNA sequence 42 0.082
9ref|XM_514964.1| PREDICTED: Pan troglodytes similar to solute ca... 38 1.3
10ref|XM_477083.1| Oryza sativa (japonica cultivar-group), mRNA 38 1.3
11gb|BC016954.1| Homo sapiens solute carrier family 25 (mitochondr... 38 1.3
12gb|BC031644.1| Homo sapiens solute carrier family 25 (mitochondr... 38 1.3
13ref|NM_031481.1| Homo sapiens solute carrier family 25 (mitochon... 38 1.3
14dbj|AK095706.1| Homo sapiens cDNA FLJ38387 fis, clone FEBRA2004219 38 1.3
15gb|AC138581.23| Pan troglodytes clone ptb-142b7, complete sequence 38 1.3
16dbj|AK153861.1| Mus musculus 2 days neonate thymus thymic cells ... 38 1.3
17dbj|AK154570.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 38 1.3
18dbj|AK166338.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 38 1.3
19gb|AF236364.1|AF236363S2 Mus musculus protein serine kinase Pskh... 38 1.3
20gb|AC159265.2| Mus musculus BAC clone RP23-462H20 from chromosom... 38 1.3
21gb|AC007666.12| Homo sapiens chromosome 22 clone p273a17 map 22q... 38 1.3
22gb|AC000052.16| Homo sapiens Chromosome 22q11.2 BAC Clone 77h2 I... 38 1.3
23gb|AC004019.20| Homo sapiens Chromosome 22q11.2 BAC Clone 357f7 ... 38 1.3
24gb|AY008285.1| Homo sapiens solute carrier (SLC25A18) mRNA, comp... 38 1.3
25dbj|AK053397.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 38 1.3
26dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.3
27dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic D... 38 1.3
28gb|BC050128.1| Mus musculus protein serine kinase H1, mRNA (cDNA... 38 1.3
29dbj|AK063732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.3
30emb|CR456578.1| Homo sapiens SLC25A18 full length open reading f... 38 1.3
31gb|AC133499.3| Mus musculus BAC clone RP24-248F14 from 8, comple... 38 1.3
32ref|NM_173432.2| Mus musculus protein serine kinase H1 (Pskh1), ... 38 1.3
33emb|AJ428203.1|HSA428203 Homo sapiens partial mRNA for mitochond... 38 1.3
34ref|XM_586667.2| PREDICTED: Bos taurus similar to Serine/threoni... 36 5.1
35emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chr... 36 5.1
36ref|XM_344760.2| PREDICTED: Rattus norvegicus protein serine kin... 36 5.1 
>ref|XM_470037.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1064

 Score = 54.0 bits (27), Expect = 2e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 4   accttcgactgcctgatgaagacctatggattcct 38
           ||||| ||||||||||||||||| |||||||||||
Sbjct: 704 acctttgactgcctgatgaagacttatggattcct 738
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 2e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 4        accttcgactgcctgatgaagacctatggattcct 38
                ||||| ||||||||||||||||| |||||||||||
Sbjct: 33466631 acctttgactgcctgatgaagacttatggattcct 33466665
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>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score = 54.0 bits (27), Expect = 2e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 4     accttcgactgcctgatgaagacctatggattcct 38
             ||||| ||||||||||||||||| |||||||||||
Sbjct: 31480 acctttgactgcctgatgaagacttatggattcct 31446
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 2e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 4        accttcgactgcctgatgaagacctatggattcct 38
                ||||| ||||||||||||||||| |||||||||||
Sbjct: 33557141 acctttgactgcctgatgaagacttatggattcct 33557175
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>dbj|AK064984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C14, full
           insert sequence
          Length = 1084

 Score = 54.0 bits (27), Expect = 2e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 4   accttcgactgcctgatgaagacctatggattcct 38
           ||||| ||||||||||||||||| |||||||||||
Sbjct: 746 acctttgactgcctgatgaagacttatggattcct 780
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>gb|AY104047.1| Zea mays PCO131880 mRNA sequence
          Length = 873

 Score = 52.0 bits (26), Expect = 9e-05
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 1   gcaaccttcgactgcctgatgaagacctatggattcct 38
           ||||||||||||||||| ||||||||||| || |||||
Sbjct: 516 gcaaccttcgactgcctcatgaagacctacggcttcct 553
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>gb|BT016220.1| Zea mays clone Contig53 mRNA sequence
          Length = 1159

 Score = 42.1 bits (21), Expect = 0.082
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 1   gcaaccttcgactgcctgatgaagacctatggattcctcac 41
           |||||||| || || |||||||||||||| || ||||||||
Sbjct: 753 gcaacctttgattgtctgatgaagacctacggcttcctcac 793
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>gb|AY104097.1| Zea mays PCO131882 mRNA sequence
          Length = 1083

 Score = 42.1 bits (21), Expect = 0.082
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 1   gcaaccttcgactgcctgatgaagacctatggattcctcac 41
           |||||||| || || |||||||||||||| || ||||||||
Sbjct: 657 gcaacctttgattgtctgatgaagacctacggcttcctcac 697
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>ref|XM_514964.1| PREDICTED: Pan troglodytes similar to solute carrier; mitochondrial
           glutamate carrier 2; solute carrier family 25,
           (mitochondrial carrier), member 18 (LOC458632), mRNA
          Length = 1668

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   tcgactgcctgatgaagac 26
           |||||||||||||||||||
Sbjct: 671 tcgactgcctgatgaagac 689
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>ref|XM_477083.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 831

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 4   accttcgactgcctgatgaagacctatggattcct 38
           |||||||| || || |||||||||||||| |||||
Sbjct: 676 accttcgattgtctcatgaagacctatgggttcct 710
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>gb|BC016954.1| Homo sapiens solute carrier family 25 (mitochondrial carrier), member
            18, mRNA (cDNA clone IMAGE:3899499), with apparent
            retained intron
          Length = 1852

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 8    tcgactgcctgatgaagac 26
            |||||||||||||||||||
Sbjct: 1637 tcgactgcctgatgaagac 1619
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>gb|BC031644.1| Homo sapiens solute carrier family 25 (mitochondrial carrier),
           member 18, mRNA (cDNA clone MGC:34115 IMAGE:5179038),
           complete cds
          Length = 2116

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   tcgactgcctgatgaagac 26
           |||||||||||||||||||
Sbjct: 576 tcgactgcctgatgaagac 594
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>ref|NM_031481.1| Homo sapiens solute carrier family 25 (mitochondrial carrier),
           member 18 (SLC25A18), mRNA
          Length = 2087

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   tcgactgcctgatgaagac 26
           |||||||||||||||||||
Sbjct: 640 tcgactgcctgatgaagac 658
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>dbj|AK095706.1| Homo sapiens cDNA FLJ38387 fis, clone FEBRA2004219
          Length = 2454

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    tcgactgcctgatgaagac 26
            |||||||||||||||||||
Sbjct: 1606 tcgactgcctgatgaagac 1624
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>gb|AC138581.23| Pan troglodytes clone ptb-142b7, complete sequence
          Length = 199928

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      tcgactgcctgatgaagac 26
              |||||||||||||||||||
Sbjct: 153843 tcgactgcctgatgaagac 153825
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>dbj|AK153861.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430001D12
           product:Protein serine kinase Pskh1 (Hypothetical
           protein), full insert sequence
          Length = 3292

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   cgactgcctgatgaagacc 27
           |||||||||||||||||||
Sbjct: 934 cgactgcctgatgaagacc 952
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>dbj|AK154570.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630048F18
           product:Protein serine kinase Pskh1 (Hypothetical
           protein), full insert sequence
          Length = 1805

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   cgactgcctgatgaagacc 27
           |||||||||||||||||||
Sbjct: 917 cgactgcctgatgaagacc 935
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>dbj|AK166338.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN
           full-length enriched library, clone:G830043A19
           product:Protein serine kinase Pskh1 (Hypothetical
           protein), full insert sequence
          Length = 3272

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   cgactgcctgatgaagacc 27
           |||||||||||||||||||
Sbjct: 911 cgactgcctgatgaagacc 929
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>gb|AF236364.1|AF236363S2 Mus musculus protein serine kinase Pskh1 (Pskh1) gene, exon 2
          Length = 6986

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    cgactgcctgatgaagacc 27
            |||||||||||||||||||
Sbjct: 4637 cgactgcctgatgaagacc 4655
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>gb|AC159265.2| Mus musculus BAC clone RP23-462H20 from chromosome 8, complete sequence
          Length = 201728

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      cgactgcctgatgaagacc 27
              |||||||||||||||||||
Sbjct: 170999 cgactgcctgatgaagacc 171017
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>gb|AC007666.12| Homo sapiens chromosome 22 clone p273a17 map 22q11.2, complete sequence
          Length = 139388

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     tcgactgcctgatgaagac 26
             |||||||||||||||||||
Sbjct: 93154 tcgactgcctgatgaagac 93172
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>gb|AC000052.16| Homo sapiens Chromosome 22q11.2 BAC Clone 77h2 In CES Region, complete
              sequence
          Length = 190363

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      tcgactgcctgatgaagac 26
              |||||||||||||||||||
Sbjct: 174335 tcgactgcctgatgaagac 174353
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>gb|AC004019.20| Homo sapiens Chromosome 22q11.2 BAC Clone 357f7 In CES Region, complete
              sequence
          Length = 260409

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      tcgactgcctgatgaagac 26
              |||||||||||||||||||
Sbjct: 249149 tcgactgcctgatgaagac 249167
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>gb|AY008285.1| Homo sapiens solute carrier (SLC25A18) mRNA, complete cds; nuclear
           gene for mitochondrial product
          Length = 2087

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   tcgactgcctgatgaagac 26
           |||||||||||||||||||
Sbjct: 640 tcgactgcctgatgaagac 658
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>dbj|AK053397.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130013P03 product:Protein serine kinase
           Pskh1 (Hypothetical protein), full insert sequence
          Length = 3256

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   cgactgcctgatgaagacc 27
           |||||||||||||||||||
Sbjct: 921 cgactgcctgatgaagacc 939
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 4       accttcgactgcctgatgaagacctatggattcct 38
               |||||||| || || |||||||||||||| |||||
Sbjct: 5820850 accttcgattgtctcatgaagacctatgggttcct 5820884
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>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1119_B04
          Length = 151721

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                 
Query: 4      accttcgactgcctgatgaagacctatggattcct 38
              |||||||| || || |||||||||||||| |||||
Sbjct: 127878 accttcgattgtctcatgaagacctatgggttcct 127912
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>gb|BC050128.1| Mus musculus protein serine kinase H1, mRNA (cDNA clone MGC:60799
           IMAGE:30024345), complete cds
          Length = 3317

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   cgactgcctgatgaagacc 27
           |||||||||||||||||||
Sbjct: 887 cgactgcctgatgaagacc 905
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>dbj|AK063732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E09, full
           insert sequence
          Length = 869

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 4   accttcgactgcctgatgaagacctatggattcct 38
           |||||||| || || |||||||||||||| |||||
Sbjct: 344 accttcgattgtctcatgaagacctatgggttcct 378
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>emb|CR456578.1| Homo sapiens SLC25A18 full length open reading frame (ORF) cDNA
           clone (cDNA clone C22ORF:pGEM.SLC25A18)
          Length = 1191

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   tcgactgcctgatgaagac 26
           |||||||||||||||||||
Sbjct: 270 tcgactgcctgatgaagac 288
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>gb|AC133499.3| Mus musculus BAC clone RP24-248F14 from 8, complete sequence
          Length = 181064

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      cgactgcctgatgaagacc 27
              |||||||||||||||||||
Sbjct: 152398 cgactgcctgatgaagacc 152380
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>ref|NM_173432.2| Mus musculus protein serine kinase H1 (Pskh1), mRNA
          Length = 3317

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   cgactgcctgatgaagacc 27
           |||||||||||||||||||
Sbjct: 887 cgactgcctgatgaagacc 905
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>emb|AJ428203.1|HSA428203 Homo sapiens partial mRNA for mitochondrial glutamate carrier (GC2
           gene), isoform 2
          Length = 2087

 Score = 38.2 bits (19), Expect = 1.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   tcgactgcctgatgaagac 26
           |||||||||||||||||||
Sbjct: 640 tcgactgcctgatgaagac 658
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>ref|XM_586667.2| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase H1
           (PSK-H1) (LOC509656), mRNA
          Length = 1451

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 10  gactgcctgatgaagacc 27
           ||||||||||||||||||
Sbjct: 927 gactgcctgatgaagacc 944
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>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete
              sequence
          Length = 160298

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 17     tgatgaagacctatggat 34
              ||||||||||||||||||
Sbjct: 149986 tgatgaagacctatggat 150003
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>ref|XM_344760.2| PREDICTED: Rattus norvegicus protein serine kinase H1 (predicted)
           (Pskh1_predicted), mRNA
          Length = 3301

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 10  gactgcctgatgaagacc 27
           ||||||||||||||||||
Sbjct: 921 gactgcctgatgaagacc 938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,397
Number of Sequences: 3902068
Number of extensions: 199397
Number of successful extensions: 45439
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45367
Number of HSP's gapped (non-prelim): 72
length of query: 43
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 23
effective length of database: 17,155,003,908
effective search space: 394565089884
effective search space used: 394565089884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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