| Clone Name | bags6p03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009409.1| Triticum aestivum clone wlm96.pk060.l13:fis, full insert mRNA sequence Length = 1677 Score = 894 bits (451), Expect = 0.0 Identities = 496/511 (97%) Strand = Plus / Plus Query: 108 gaaaatgaatttaaggttgaaataattaacgaattgcccgaggacaagaccattacagta 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 gaaaatgaatttaaggttgaaataattaacgaattgcccgaggacaagaccattacagta 62 Query: 168 tacagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaaatacttccttt 227 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 63 tacagatgtggtcctttggtcgacctctgccgtggcccgcacatcccaaatacttccttt 122 Query: 228 gttaaagctttcgcttgcctcaaggcttcagcatcatattggagaggaaaagcagaccgc 287 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 123 gttaaagctttcgcttgcctcaaggcttcagcatcatactggagaggaaaagcagaccgt 182 Query: 288 gagagcctgcagagagtatatgggatctctttccctgactctaaacgtctcaaggaatat 347 ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct: 183 gagagcctgcagagagtatatggaatctccttccctgattctaaacgtctcaaggaatat 242 Query: 348 ctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagtcccaggaa 407 | ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || Sbjct: 243 caacatatgatagaggaagctaagaaacgcgatcataggttactagggcagtcccagaaa 302 Query: 408 ctcttctttttccatccacttagcccaggtagctgcttcttccttccaaatggcgctata 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 ctcttctttttccatccacttagcccaggtagctgcttcttccttccaaatggcgctata 362 Query: 468 atatacaacaaattgatggattttttgcgcaaggagtatagagagagaggctaccgagag 527 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 363 atatataacaaattgatggattttttgcgcaaggagtatagagagagaggctaccaagag 422 Query: 528 gttttgagtccaaatatttacaacatgcaactttgggaaacctctggacatgctgcaaac 587 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gttctgagtccaaatatttacaacatgcaactttgggaaacctctggacatgctgcaaac 482 Query: 588 tacaaggacaacatgtttgttttcgagatcg 618 ||||||||||||||||||||||| ||||||| Sbjct: 483 tacaaggacaacatgtttgtttttgagatcg 513
>ref|XM_481363.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2474 Score = 591 bits (298), Expect = e-165 Identities = 511/580 (88%), Gaps = 2/580 (0%) Strand = Plus / Plus Query: 37 gctgttgcggagnaagcaaccatttgaacgcattgaagtctctagnagcagaagctcttg 96 ||||||||||| || |||||||||||||| ||||| ||||| || ||||| || |||| Sbjct: 765 gctgttgcggaaaaa-caaccatttgaacgaattgaggtctccagg-gcagaggcccttg 822 Query: 97 aaatttttgccgaaaatgaatttaaggttgaaataattaacgaattgcccgaggacaaga 156 |||| || || |||||| |||||||||||||||| ||||| || ||||| || ||||||| Sbjct: 823 aaatgttcgcagaaaataaatttaaggttgaaatcattaatgagttgcctgaagacaaga 882 Query: 157 ccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaa 216 |||||||||||||||||||||||||| |||| |||||||||||||| || |||||||| | Sbjct: 883 ccattacagtatacagatgtggtcctctagttgacctttgccgtgggccacacatcccca 942 Query: 217 atacttcctttgttaaagctttcgcttgcctcaaggcttcagcatcatattggagaggaa 276 |||||||||||||||||||||| ||||| || ||||| ||| | || ||||||||||| | Sbjct: 943 atacttcctttgttaaagcttttgcttgtcttaaggcatcatcgtcgtattggagaggga 1002 Query: 277 aagcagaccgcgagagcctgcagagagtatatgggatctctttccctgactctaaacgtc 336 ||||||| || ||||||||||||||||||||||| || ||||| ||||| |||||||||| Sbjct: 1003 aagcagatcgagagagcctgcagagagtatatggaatttcttttcctgattctaaacgtc 1062 Query: 337 tcaaggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggc 396 ||||||||||| |||| || |||| || |||||||| |||||||||||| ||||||| | Sbjct: 1063 tcaaggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggac 1122 Query: 397 agtcccaggaactcttctttttccatccacttagcccaggtagctgcttcttccttccaa 456 || ||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||| Sbjct: 1123 agacccaggatctcttctttttccatcaacttagtccaggaagctgcttcttccttccac 1182 Query: 457 atggcgctataatatacaacaaattgatggattttttgcgcaaggagtatagagagagag 516 |||| ||||||||||||||||||||||||||||||||||| || | || ||||| |||| Sbjct: 1183 atggtgctataatatacaacaaattgatggattttttgcgacagcaatacagagatagag 1242 Query: 517 gctaccgagaggttttgagtccaaatatttacaacatgcaactttgggaaacctctggac 576 | || | |||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 1243 gatatcaagaggttttgagcccaaatatttacaatatgcaactctgggaaacctctggac 1302 Query: 577 atgctgcaaactacaaggacaacatgtttgttttcgagat 616 ||||||||||||||||||| || ||||||||||| ||||| Sbjct: 1303 atgctgcaaactacaaggagaatatgtttgtttttgagat 1342
>emb|Y14368.1|OSTHRRS Oryza sativa mRNA for threonyl-tRNA synthetase, partial Length = 1811 Score = 591 bits (298), Expect = e-165 Identities = 511/580 (88%), Gaps = 2/580 (0%) Strand = Plus / Plus Query: 37 gctgttgcggagnaagcaaccatttgaacgcattgaagtctctagnagcagaagctcttg 96 ||||||||||| || |||||||||||||| ||||| ||||| || ||||| || |||| Sbjct: 75 gctgttgcggaaaaa-caaccatttgaacgaattgaggtctccagg-gcagaggcccttg 132 Query: 97 aaatttttgccgaaaatgaatttaaggttgaaataattaacgaattgcccgaggacaaga 156 |||| || || |||||| |||||||||||||||| ||||| || ||||| || ||||||| Sbjct: 133 aaatgttcgcagaaaataaatttaaggttgaaatcattaatgagttgcctgaagacaaga 192 Query: 157 ccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaa 216 |||||||||||||||||||||||||| |||| |||||||||||||| || |||||||| | Sbjct: 193 ccattacagtatacagatgtggtcctctagttgacctttgccgtgggccacacatcccca 252 Query: 217 atacttcctttgttaaagctttcgcttgcctcaaggcttcagcatcatattggagaggaa 276 |||||||||||||||||||||| ||||| || ||||| ||| | || ||||||||||| | Sbjct: 253 atacttcctttgttaaagcttttgcttgtcttaaggcatcatcgtcgtattggagaggga 312 Query: 277 aagcagaccgcgagagcctgcagagagtatatgggatctctttccctgactctaaacgtc 336 ||||||| || ||||||||||||||||||||||| || ||||| ||||| |||||||||| Sbjct: 313 aagcagatcgagagagcctgcagagagtatatggaatttcttttcctgattctaaacgtc 372 Query: 337 tcaaggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggc 396 ||||||||||| |||| || |||| || |||||||| |||||||||||| ||||||| | Sbjct: 373 tcaaggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggac 432 Query: 397 agtcccaggaactcttctttttccatccacttagcccaggtagctgcttcttccttccaa 456 || ||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||| Sbjct: 433 agacccaggatctcttctttttccatcaacttagtccaggaagctgcttcttccttccac 492 Query: 457 atggcgctataatatacaacaaattgatggattttttgcgcaaggagtatagagagagag 516 |||| ||||||||||||||||||||||||||||||||||| || | || ||||| |||| Sbjct: 493 atggtgctataatatacaacaaattgatggattttttgcgacagcaatacagagatagag 552 Query: 517 gctaccgagaggttttgagtccaaatatttacaacatgcaactttgggaaacctctggac 576 | || | |||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 553 gatatcaagaggttttgagcccaaatatttacaatatgcaactctgggaaacctctggac 612 Query: 577 atgctgcaaactacaaggacaacatgtttgttttcgagat 616 ||||||||||||||||||| || ||||||||||| ||||| Sbjct: 613 atgctgcaaactacaaggagaatatgtttgtttttgagat 652
>dbj|AK070378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052L01, full insert sequence Length = 2475 Score = 591 bits (298), Expect = e-165 Identities = 511/580 (88%), Gaps = 2/580 (0%) Strand = Plus / Plus Query: 37 gctgttgcggagnaagcaaccatttgaacgcattgaagtctctagnagcagaagctcttg 96 ||||||||||| || |||||||||||||| ||||| ||||| || ||||| || |||| Sbjct: 765 gctgttgcggaaaaa-caaccatttgaacgaattgaggtctccagg-gcagaggcccttg 822 Query: 97 aaatttttgccgaaaatgaatttaaggttgaaataattaacgaattgcccgaggacaaga 156 |||| || || |||||| |||||||||||||||| ||||| || ||||| || ||||||| Sbjct: 823 aaatgttcgcagaaaataaatttaaggttgaaatcattaatgagttgcctgaagacaaga 882 Query: 157 ccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcacatcccaa 216 |||||||||||||||||||||||||| |||| |||||||||||||| || |||||||| | Sbjct: 883 ccattacagtatacagatgtggtcctctagttgacctttgccgtgggccacacatcccca 942 Query: 217 atacttcctttgttaaagctttcgcttgcctcaaggcttcagcatcatattggagaggaa 276 |||||||||||||||||||||| ||||| || ||||| ||| | || ||||||||||| | Sbjct: 943 atacttcctttgttaaagcttttgcttgtcttaaggcatcatcgtcgtattggagaggga 1002 Query: 277 aagcagaccgcgagagcctgcagagagtatatgggatctctttccctgactctaaacgtc 336 ||||||| || ||||||||||||||||||||||| || ||||| ||||| |||||||||| Sbjct: 1003 aagcagatcgagagagcctgcagagagtatatggaatttcttttcctgattctaaacgtc 1062 Query: 337 tcaaggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggc 396 ||||||||||| |||| || |||| || |||||||| |||||||||||| ||||||| | Sbjct: 1063 tcaaggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggac 1122 Query: 397 agtcccaggaactcttctttttccatccacttagcccaggtagctgcttcttccttccaa 456 || ||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||| Sbjct: 1123 agacccaggatctcttctttttccatcaacttagtccaggaagctgcttcttccttccac 1182 Query: 457 atggcgctataatatacaacaaattgatggattttttgcgcaaggagtatagagagagag 516 |||| ||||||||||||||||||||||||||||||||||| || | || ||||| |||| Sbjct: 1183 atggtgctataatatacaacaaattgatggattttttgcgacagcaatacagagatagag 1242 Query: 517 gctaccgagaggttttgagtccaaatatttacaacatgcaactttgggaaacctctggac 576 | || | |||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 1243 gatatcaagaggttttgagcccaaatatttacaatatgcaactctgggaaacctctggac 1302 Query: 577 atgctgcaaactacaaggacaacatgtttgttttcgagat 616 ||||||||||||||||||| || ||||||||||| ||||| Sbjct: 1303 atgctgcaaactacaaggagaatatgtttgtttttgagat 1342
>gb|BT017870.1| Zea mays clone EL01N0512G02.c mRNA sequence Length = 848 Score = 577 bits (291), Expect = e-161 Identities = 535/613 (87%), Gaps = 3/613 (0%) Strand = Plus / Plus Query: 5 cactttggtctcattgacaagcaagctaaaa-ggctgttgcggagnaagcaaccatttga 63 ||||||||| ||||||| || |||||||||| |||||||||||| | |||||||||||| Sbjct: 73 cactttggtgtcattgaaaaccaagctaaaaaggctgttgcggaaca-gcaaccatttga 131 Query: 64 acgcattgaagtctctagnagcagaagctcttgaaatttttgccgaaaatgaatttaagg 123 |||||| || ||| || ||||||||||||||||| ||||| |||||| |||| |||| Sbjct: 132 acgcatcgaggtcagcagg-gcagaagctcttgaaatgtttgctgaaaataaattcaagg 190 Query: 124 ttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtcctt 183 ||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 191 ttgaaattattaatgagttgcccgaggacaagaccattacagtatacaggtgtggtcctt 250 Query: 184 tagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcgctt 243 |||| ||||| |||||||| || || ||||| ||||||||||| || ||||||||||||| Sbjct: 251 tagttgacctatgccgtgggccacatatcccgaatacttccttcgtcaaagctttcgctt 310 Query: 244 gcctcaaggcttcagcatcatattggagaggaaaagcagaccgcgagagcctgcagagag 303 | || ||||||||| |||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 311 gtctgaaggcttcatcatcatattggagaggaaaagcagaccgtgaaagcctgcagagag 370 Query: 304 tatatgggatctctttccctgactctaaacgtctcaaggaatatctacatatgatagagg 363 ||||||| || ||||||||||| ||| |||||||| ||||||| |||| | |||||| Sbjct: 371 tatatggaatatctttccctgattctcgacgtctcacggaatataaacattttctagagg 430 Query: 364 aagctaagaaacgtgatcataggttattagggcagtcccaggaactcttctttttccatc 423 ||||||||||||||||||||||| || ||||| | || ||||||||||||||||||||| Sbjct: 431 aagctaagaaacgtgatcataggatactagggaaatcacaggaactcttctttttccatg 490 Query: 424 cacttagcccaggtagctgcttcttccttccaaatggcgctataatatacaacaaattga 483 ||||||||| || ||||| |||||||||||| |||| |||| |||||| |||||| ||| Sbjct: 491 aacttagccctggaagctgtttcttccttccacatggtgctagaatatataacaaactga 550 Query: 484 tggattttttgcgcaaggagtatagagagagaggctaccgagaggttttgagtccaaata 543 || | ||| |||| || |||| ||||| ||||| |||| |||||| ||||| ||||||| Sbjct: 551 tgaactttatgcgaaaacagtacagagatagaggataccaagaggtgttgagcccaaata 610 Query: 544 tttacaacatgcaactttgggaaacctctggacatgctgcaaactacaaggacaacatgt 603 ||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 611 tttacaatatgcaactttgggaaacttccggacatgctgcaaactacaaggagaacatgt 670 Query: 604 ttgttttcgagat 616 ||||||| ||||| Sbjct: 671 ttgtttttgagat 683
>gb|AY103693.1| Zea mays PCO073595 mRNA sequence Length = 2491 Score = 549 bits (277), Expect = e-153 Identities = 533/615 (86%), Gaps = 3/615 (0%) Strand = Plus / Plus Query: 5 cactttggtctcattgacaagcaagctaaaa-ggctgttgcggagnaagcaaccatttga 63 ||||||||| ||||||| || |||||||||| |||||||||||| |||||||| ||||| Sbjct: 731 cactttggtatcattgaaaaccaagctaaaaaggctgttgcgga-aaagcaaccgtttga 789 Query: 64 acgcattgaagtctctagnagcagaagctcttgaaatttttgccgaaaatgaatttaagg 123 ||||||||| ||| || ||||||||||||||||| ||||| || |||||||| |||| Sbjct: 790 acgcattgaggtcagcagg-gcagaagctcttgaaatgtttgctgagaatgaattcaagg 848 Query: 124 ttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtcctt 183 ||||||| ||||| || ||||| ||||||||||||||||| |||||||| |||||||||| Sbjct: 849 ttgaaatcattaatgagttgcctgaggacaagaccattactgtatacaggtgtggtcctt 908 Query: 184 tagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcgctt 243 |||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 909 tagttgacctatgccgtgggccacacatcccaaatacttcctttgtcaaagctttcgctt 968 Query: 244 gcctcaaggcttcagcatcatattggagaggaaaagcagaccgcgagagcctgcagagag 303 | || ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 969 gtctgaaggcttcatcatcatattggagaggaaaagttgaccgcgaaagcctgcagagag 1028 Query: 304 tatatgggatctctttccctgactctaaacgtctcaaggaatatctacatatgatagagg 363 ||||||| || ||||||||||| ||| |||||||| ||||||| |||| | |||||| Sbjct: 1029 tatatggaatttctttccctgattctcgacgtctcacggaatataaacattttctagagg 1088 Query: 364 aagctaagaaacgtgatcataggttattagggcagtcccaggaactcttctttttccatc 423 ||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||| Sbjct: 1089 aagctaagaaacgtgatcataggatattagggaaagcacaggaactcttctttttccatg 1148 Query: 424 cacttagcccaggtagctgcttcttccttccaaatggcgctataatatacaacaaattga 483 ||||||||| || |||||||||||||||||| |||| || | ||||| |||||| ||| Sbjct: 1149 aacttagccctggaagctgcttcttccttccacatggtgccaggatatataacaaactga 1208 Query: 484 tggattttttgcgcaaggagtatagagagagaggctaccgagaggttttgagtccaaata 543 |||| || |||| | |||| ||||| ||||| |||| |||||| ||||| ||||||| Sbjct: 1209 tggacttcatgcgacaacagtacagagatagaggataccaagaggtgttgagcccaaata 1268 Query: 544 tttacaacatgcaactttgggaaacctctggacatgctgcaaactacaaggacaacatgt 603 ||||||| |||||||| |||||||| |||||||| || |||||||| ||||| ||||||| Sbjct: 1269 tttacaatatgcaactatgggaaacttctggacacgccgcaaactataaggagaacatgt 1328 Query: 604 ttgttttcgagatcg 618 ||||||| ||||||| Sbjct: 1329 ttgtttttgagatcg 1343
>dbj|AK059095.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C04, full insert sequence Length = 1312 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 400 cccaggaactcttctttttccatccacttagcccaggtagctgcttcttccttccaaatg 459 ||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||| ||| Sbjct: 6 cccaggatctcttctttttccatcaacttagtccaggaagctgcttcttccttccacatg 65 Query: 460 gcgctataatatacaacaaattgatggattttttgcgcaaggagtatagagagagaggct 519 | ||||||||||||||||||||||||||||||||||| || | || ||||| ||||| | Sbjct: 66 gtgctataatatacaacaaattgatggattttttgcgacagcaatacagagatagaggat 125 Query: 520 accgagaggttttgagtccaaatatttacaacatgcaactttgggaaacctctggacatg 579 | | |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 126 atcaagaggttttgagcccaaatatttacaatatgcaactctgggaaacctctggacatg 185 Query: 580 ctgcaaactacaaggacaacatgtttgttttcgagat 616 |||||||||||||||| || ||||||||||| ||||| Sbjct: 186 ctgcaaactacaaggagaatatgtttgtttttgagat 222
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 159 bits (80), Expect = 1e-35 Identities = 113/124 (91%) Strand = Plus / Minus Query: 121 aggttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtc 180 |||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||||| Sbjct: 11888059 aggttgaaatcattaatgagttgcctgaagacaagaccattacagtatacagatgtggtc 11888000 Query: 181 ctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcg 240 || |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| | Sbjct: 11887999 ctctagttgacctttgccgtgggccacacatccccaatacttcctttgttaaagcttttg 11887940 Query: 241 cttg 244 |||| Sbjct: 11887939 cttg 11887936 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 526 aggttttgagtccaaatatttacaacatgcaactttgggaaacctctggacatgctgcaa 585 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 11886866 aggttttgagcccaaatatttacaatatgcaactctgggaaacctctggacatgctgcaa 11886807 Query: 586 actacaaggacaacatgtttgtttt 610 |||||||||| || ||||||||||| Sbjct: 11886806 actacaaggagaatatgtttgtttt 11886782 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 432 ccaggtagctgcttcttccttccaaatggcgctataatatacaacaaattgatggatttt 491 ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 11887074 ccaggaagctgcttcttccttccacatggtgctataatatacaacaaattgatggatttt 11887015 Query: 492 ttgcg 496 ||||| Sbjct: 11887014 ttgcg 11887010 Score = 101 bits (51), Expect = 3e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 264 tattggagaggaaaagcagaccgcgagagcctgcagagagtatatgggatctctttccct 323 ||||||||||| |||||||| || ||||||||||||||||||||||| || ||||| ||| Sbjct: 11887834 tattggagagggaaagcagatcgagagagcctgcagagagtatatggaatttcttttcct 11887775 Query: 324 gactctaaacgtctcaagg 342 || |||||||||||||||| Sbjct: 11887774 gattctaaacgtctcaagg 11887756 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 340 aggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagt 399 |||||||| |||| || |||| || |||||||| |||||||||||| ||||||| ||| Sbjct: 11887259 aggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggacaga 11887200 Query: 400 cccaggaactcttctttttccatccacttag 430 ||||||| |||||||||||||||| |||||| Sbjct: 11887199 cccaggatctcttctttttccatcaacttag 11887169 Score = 48.1 bits (24), Expect = 0.035 Identities = 60/71 (84%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 53 caaccatttgaacgcattgaagtctctagnagcagaagctcttgaaatttttgccgaaaa 112 |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||||| Sbjct: 11888451 caaccatttgaacgaattgaggtctccagg-gcagaggcccttgaaatgttcgcagaaaa 11888393 Query: 113 tgaatttaagg 123 | ||||||||| Sbjct: 11888392 taaatttaagg 11888382
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_A03 Length = 168689 Score = 159 bits (80), Expect = 1e-35 Identities = 113/124 (91%) Strand = Plus / Minus Query: 121 aggttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtc 180 |||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||||| Sbjct: 166344 aggttgaaatcattaatgagttgcctgaagacaagaccattacagtatacagatgtggtc 166285 Query: 181 ctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcg 240 || |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| | Sbjct: 166284 ctctagttgacctttgccgtgggccacacatccccaatacttcctttgttaaagcttttg 166225 Query: 241 cttg 244 |||| Sbjct: 166224 cttg 166221 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 526 aggttttgagtccaaatatttacaacatgcaactttgggaaacctctggacatgctgcaa 585 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 165151 aggttttgagcccaaatatttacaatatgcaactctgggaaacctctggacatgctgcaa 165092 Query: 586 actacaaggacaacatgtttgtttt 610 |||||||||| || ||||||||||| Sbjct: 165091 actacaaggagaatatgtttgtttt 165067 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 432 ccaggtagctgcttcttccttccaaatggcgctataatatacaacaaattgatggatttt 491 ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 165359 ccaggaagctgcttcttccttccacatggtgctataatatacaacaaattgatggatttt 165300 Query: 492 ttgcg 496 ||||| Sbjct: 165299 ttgcg 165295 Score = 101 bits (51), Expect = 3e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 264 tattggagaggaaaagcagaccgcgagagcctgcagagagtatatgggatctctttccct 323 ||||||||||| |||||||| || ||||||||||||||||||||||| || ||||| ||| Sbjct: 166119 tattggagagggaaagcagatcgagagagcctgcagagagtatatggaatttcttttcct 166060 Query: 324 gactctaaacgtctcaagg 342 || |||||||||||||||| Sbjct: 166059 gattctaaacgtctcaagg 166041 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 340 aggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagt 399 |||||||| |||| || |||| || |||||||| |||||||||||| ||||||| ||| Sbjct: 165544 aggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggacaga 165485 Query: 400 cccaggaactcttctttttccatccacttag 430 ||||||| |||||||||||||||| |||||| Sbjct: 165484 cccaggatctcttctttttccatcaacttag 165454 Score = 48.1 bits (24), Expect = 0.035 Identities = 60/71 (84%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 53 caaccatttgaacgcattgaagtctctagnagcagaagctcttgaaatttttgccgaaaa 112 |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||||| Sbjct: 166736 caaccatttgaacgaattgaggtctccagg-gcagaggcccttgaaatgttcgcagaaaa 166678 Query: 113 tgaatttaagg 123 | ||||||||| Sbjct: 166677 taaatttaagg 166667
>dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1212_C09 Length = 120818 Score = 159 bits (80), Expect = 1e-35 Identities = 113/124 (91%) Strand = Plus / Minus Query: 121 aggttgaaataattaacgaattgcccgaggacaagaccattacagtatacagatgtggtc 180 |||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||||| Sbjct: 37204 aggttgaaatcattaatgagttgcctgaagacaagaccattacagtatacagatgtggtc 37145 Query: 181 ctttagtcgacctttgccgtggcccgcacatcccaaatacttcctttgttaaagctttcg 240 || |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| | Sbjct: 37144 ctctagttgacctttgccgtgggccacacatccccaatacttcctttgttaaagcttttg 37085 Query: 241 cttg 244 |||| Sbjct: 37084 cttg 37081 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 526 aggttttgagtccaaatatttacaacatgcaactttgggaaacctctggacatgctgcaa 585 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 36011 aggttttgagcccaaatatttacaatatgcaactctgggaaacctctggacatgctgcaa 35952 Query: 586 actacaaggacaacatgtttgtttt 610 |||||||||| || ||||||||||| Sbjct: 35951 actacaaggagaatatgtttgtttt 35927 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 432 ccaggtagctgcttcttccttccaaatggcgctataatatacaacaaattgatggatttt 491 ||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 36219 ccaggaagctgcttcttccttccacatggtgctataatatacaacaaattgatggatttt 36160 Query: 492 ttgcg 496 ||||| Sbjct: 36159 ttgcg 36155 Score = 101 bits (51), Expect = 3e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 264 tattggagaggaaaagcagaccgcgagagcctgcagagagtatatgggatctctttccct 323 ||||||||||| |||||||| || ||||||||||||||||||||||| || ||||| ||| Sbjct: 36979 tattggagagggaaagcagatcgagagagcctgcagagagtatatggaatttcttttcct 36920 Query: 324 gactctaaacgtctcaagg 342 || |||||||||||||||| Sbjct: 36919 gattctaaacgtctcaagg 36901 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 340 aggaatatctacatatgatagaggaagctaagaaacgtgatcataggttattagggcagt 399 |||||||| |||| || |||| || |||||||| |||||||||||| ||||||| ||| Sbjct: 36404 aggaatataaacatctgctagaagaggctaagaagcgtgatcataggctattaggacaga 36345 Query: 400 cccaggaactcttctttttccatccacttag 430 ||||||| |||||||||||||||| |||||| Sbjct: 36344 cccaggatctcttctttttccatcaacttag 36314 Score = 48.1 bits (24), Expect = 0.035 Identities = 60/71 (84%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 53 caaccatttgaacgcattgaagtctctagnagcagaagctcttgaaatttttgccgaaaa 112 |||||||||||||| ||||| ||||| || ||||| || |||||||| || || ||||| Sbjct: 37596 caaccatttgaacgaattgaggtctccagg-gcagaggcccttgaaatgttcgcagaaaa 37538 Query: 113 tgaatttaagg 123 | ||||||||| Sbjct: 37537 taaatttaagg 37527
>ref|NM_122565.2| Arabidopsis thaliana ATP binding / tRNA ligase/ threonine-tRNA ligase AT5G26830 mRNA, complete cds Length = 2395 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 150 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 209 |||| ||||||||| || ||||||||||| ||||| || || | || ||||| |||||| Sbjct: 772 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 831 Query: 210 atcccaaatacttcctttgttaaagc 235 || ||||||||||||||||| ||||| Sbjct: 832 ataccaaatacttcctttgtgaaagc 857
>emb|Y14329.1|ATTRRS Arabidopsis thaliana mRNA for threonyl-tRNA synthetase Length = 2354 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 150 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 209 |||| ||||||||| || ||||||||||| ||||| || || | || ||||| |||||| Sbjct: 772 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 831 Query: 210 atcccaaatacttcctttgttaaagc 235 || ||||||||||||||||| ||||| Sbjct: 832 ataccaaatacttcctttgtgaaagc 857
>gb|AY048205.1| Arabidopsis thaliana AT5g26830/F2P16_90 mRNA, complete cds Length = 2260 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 150 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 209 |||| ||||||||| || ||||||||||| ||||| || || | || ||||| |||||| Sbjct: 706 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 765 Query: 210 atcccaaatacttcctttgttaaagc 235 || ||||||||||||||||| ||||| Sbjct: 766 ataccaaatacttcctttgtgaaagc 791
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence Length = 110946 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 150 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 209 |||| ||||||||| || ||||||||||| ||||| || || | || ||||| |||||| Sbjct: 40150 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 40209 Query: 210 atcccaaatacttcctttgttaaagc 235 || ||||||||||||||||| ||||| Sbjct: 40210 ataccaaatacttcctttgtgaaagc 40235
>gb|BT005825.1| Arabidopsis thaliana At5g26830/F2P16_90 gene, complete cds Length = 2031 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 150 gacaagaccattacagtatacagatgtggtcctttagtcgacctttgccgtggcccgcac 209 |||| ||||||||| || ||||||||||| ||||| || || | || ||||| |||||| Sbjct: 619 gacatgaccattactgtctacagatgtggccctttggtggatttgtgtcgtggaccgcac 678 Query: 210 atcccaaatacttcctttgttaaagc 235 || ||||||||||||||||| ||||| Sbjct: 679 ataccaaatacttcctttgtgaaagc 704
>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185790 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 107 cgaaaatgaatttaaggttgaaata 131 ||||||||||||||||||||||||| Sbjct: 85003 cgaaaatgaatttaaggttgaaata 84979
>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187555 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 107 cgaaaatgaatttaaggttgaaata 131 ||||||||||||||||||||||||| Sbjct: 139608 cgaaaatgaatttaaggttgaaata 139584
>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete sequence Length = 281917 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 107 cgaaaatgaatttaaggttgaaata 131 ||||||||||||||||||||||||| Sbjct: 82459 cgaaaatgaatttaaggttgaaata 82483
>gb|BC000541.2| Homo sapiens threonyl-tRNA synthetase-like 1, mRNA (cDNA clone MGC:3031 IMAGE:3163506), complete cds Length = 2416 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 959 caggagctcttcttcttccatgaactgagccctgggagctgcttcttcct 1008
>gb|BC007824.2| Homo sapiens threonyl-tRNA synthetase-like 1, mRNA (cDNA clone IMAGE:2821973), partial cds Length = 2694 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 900 caggagctcttcttcttccatgaactgagccctgggagctgcttcttcct 949
>ref|XM_879369.1| PREDICTED: Bos taurus similar to threonyl-tRNA synthetase-like 1, transcript variant 7 (LOC511740), mRNA Length = 2466 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 940 caggagctcttcttcttccatgaactgagccccgggagctgcttcttcct 989
>ref|XM_866940.1| PREDICTED: Bos taurus similar to threonyl-tRNA synthetase-like 1, transcript variant 2 (LOC511740), mRNA Length = 2517 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 940 caggagctcttcttcttccatgaactgagccccgggagctgcttcttcct 989
>ref|XM_879305.1| PREDICTED: Bos taurus similar to threonyl-tRNA synthetase-like 1, transcript variant 6 (LOC511740), mRNA Length = 2172 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 940 caggagctcttcttcttccatgaactgagccccgggagctgcttcttcct 989
>ref|XM_589133.2| PREDICTED: Bos taurus similar to threonyl-tRNA synthetase-like 1, transcript variant 1 (LOC511740), mRNA Length = 1318 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 940 caggagctcttcttcttccatgaactgagccccgggagctgcttcttcct 989
>ref|XM_879245.1| PREDICTED: Bos taurus similar to threonyl-tRNA synthetase-like 1, transcript variant 5 (LOC511740), mRNA Length = 2121 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 940 caggagctcttcttcttccatgaactgagccccgggagctgcttcttcct 989
>ref|NM_025150.3| Homo sapiens threonyl-tRNA synthetase-like 1 (TARSL1), mRNA Length = 2390 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 932 caggagctcttcttcttccatgaactgagccctgggagctgcttcttcct 981
>emb|AL356356.17| Human DNA sequence from clone RP11-54A4 on chromosome 1 Contains the 3' end of the gene for a novel protein (KIAA0460), the gene for threonyl-tRNA synthetase (FLJ12528), the ECM1 gene for extracellular matrix protein 1, the TSRC1 gene for thrombospondin repeat containing 1, two novel genes, the MCL1 gene for myeloid cell leukemia sequence 1 (BCL2-related), the ENSA gene for endosulfine alpha, the 3' end of the gene for GPP34-related protein (GPP34R) and two CpG islands, complete sequence Length = 176550 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 24075 caggagctcttcttcttccatgaactgagccctgggagctgcttcttcct 24124
>dbj|AK222814.1| Homo sapiens mRNA for threonyl-tRNA synthetase-like 1 variant, clone: HEP06840 Length = 2228 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 953 caggagctcttcttcttccatgaactgagccctgggagctgcttcttcct 1002
>gb|BC009997.2| Homo sapiens threonyl-tRNA synthetase-like 1, mRNA (cDNA clone MGC:15034 IMAGE:4128881), complete cds Length = 2390 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 402 caggaactcttctttttccatccacttagcccaggtagctgcttcttcct 451 ||||| |||||||| |||||| ||| ||||| || |||||||||||||| Sbjct: 932 caggagctcttcttcttccatgaactgagccctgggagctgcttcttcct 981
>ref|XM_631729.1| Dictyostelium discoideum threonine-tRNA ligase (DDB0231248), partial mRNA Length = 2133 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gaactcttctttttccatcca 425 ||||||||||||||||||||| Sbjct: 973 gaactcttctttttccatcca 993
>gb|AC164402.3| Mus musculus chromosome 15, clone RP23-463G20, complete sequence Length = 196916 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 ccaggtagctgcttcttcctt 452 ||||||||||||||||||||| Sbjct: 187752 ccaggtagctgcttcttcctt 187732
>ref|XM_992880.1| PREDICTED: Mus musculus RIKEN cDNA 4933407H18 gene, transcript variant 2 (4933407H18Rik), mRNA Length = 10077 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 5500 ctgcttcttccttccaaatgg 5520
>ref|XM_132005.5| PREDICTED: Mus musculus RIKEN cDNA 4933407H18 gene, transcript variant 1 (4933407H18Rik), mRNA Length = 10077 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 5500 ctgcttcttccttccaaatgg 5520
>ref|XM_911619.2| PREDICTED: Mus musculus RIKEN cDNA 4933407H18 gene, transcript variant 4 (4933407H18Rik), mRNA Length = 10078 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 5498 ctgcttcttccttccaaatgg 5518
>gb|BC061483.1| Mus musculus RIKEN cDNA 4933407H18 gene, mRNA (cDNA clone IMAGE:6514125), partial cds Length = 5621 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 4253 ctgcttcttccttccaaatgg 4273
>gb|AC015798.7| Homo sapiens chromosome 15, clone RP11-341E5, complete sequence Length = 182107 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 512 gagaggctaccgagaggttttgagt 536 ||||||||||||||||||| ||||| Sbjct: 20405 gagaggctaccgagaggttgtgagt 20429
>gb|AC096947.2| Homo sapiens chromosome 1 clone RP4-802A10, complete sequence Length = 148730 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tttaaggttgaaataattaac 137 ||||||||||||||||||||| Sbjct: 122726 tttaaggttgaaataattaac 122706
>gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, complete sequence Length = 177386 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 512 gagaggctaccgagaggttttgagt 536 ||||||||||||||||||| ||||| Sbjct: 131464 gagaggctaccgagaggttgtgagt 131488
>gb|AC092784.2| Homo sapiens chromosome 1 clone RP5-833A20, complete sequence Length = 117613 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tttaaggttgaaataattaac 137 ||||||||||||||||||||| Sbjct: 94652 tttaaggttgaaataattaac 94672
>dbj|AK170675.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630113H19 product:unclassifiable, full insert sequence Length = 2963 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 1539 ctgcttcttccttccaaatgg 1559
>gb|AC009869.7| Homo sapiens chromosome 11, clone RP11-222N13, complete sequence Length = 192696 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ccaggaactcttctttttcca 421 ||||||||||||||||||||| Sbjct: 107301 ccaggaactcttctttttcca 107281
>gb|AC023456.8| Homo sapiens chromosome 15, clone RP11-162P24, complete sequence Length = 163502 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 512 gagaggctaccgagaggttttgagt 536 ||||||||||||||||||| ||||| Sbjct: 77803 gagaggctaccgagaggttgtgagt 77827
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 186 gtcgacctttgccgtggcccgcacatccc 214 |||||||| ||||| |||||||||||||| Sbjct: 2650651 gtcgacctgtgccgcggcccgcacatccc 2650623
>dbj|AK040506.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430104C13 product:hypothetical protein, full insert sequence Length = 5622 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 5398 ctgcttcttccttccaaatgg 5418
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 187 tcgacctttgccgtggcccgcacat 211 ||||||| ||||||||||||||||| Sbjct: 739639 tcgacctctgccgtggcccgcacat 739615
>dbj|AK129384.1| Mus musculus mRNA for mKIAA1530 protein Length = 6423 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 5078 ctgcttcttccttccaaatgg 5098
>gb|AC145072.9| Mus musculus chromosome 5, clone RP24-94L5, complete sequence Length = 217930 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 ctgcttcttccttccaaatgg 460 ||||||||||||||||||||| Sbjct: 126166 ctgcttcttccttccaaatgg 126146
>dbj|AK113699.1| Ciona intestinalis cDNA, clone:cicl004l05, full insert sequence Length = 2621 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 162 acagtatacagatgtggtcctttagtcgacctttgccgtgg 202 ||||| |||||||||||||||||| | || ||||| ||||| Sbjct: 851 acagtgtacagatgtggtcctttaattgatctttgtcgtgg 891
>gb|AC106843.11| Mus musculus chromosome 15, clone RP24-151M4, complete sequence Length = 179117 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 ccaggtagctgcttcttcctt 452 ||||||||||||||||||||| Sbjct: 50644 ccaggtagctgcttcttcctt 50664
>ref|NM_001031447.1| Gallus gallus threonyl-tRNA synthetase (TARS), mRNA Length = 2483 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 acagtatacagatgtggtcc 181 |||||||||||||||||||| Sbjct: 755 acagtatacagatgtggtcc 774
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gtcgacctttgccgtggcccgcac 209 |||||||| ||||||||||||||| Sbjct: 1270608 gtcgacctgtgccgtggcccgcac 1270631
>emb|CR974462.5| Mouse DNA sequence from clone RP23-222K15 on chromosome 17, complete sequence Length = 228057 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ctttccctgactctaaacgtctca 339 ||||||||||||||||||| |||| Sbjct: 122611 ctttccctgactctaaacggctca 122634
>ref|XM_386415.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06239.1) partial mRNA Length = 5343 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 atggcgctataatatacaac 476 |||||||||||||||||||| Sbjct: 1256 atggcgctataatatacaac 1275
>gb|AC112792.4| Mus musculus BAC clone RP23-192J17 from 18, complete sequence Length = 219784 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 agtcccaggaactcttcttt 416 |||||||||||||||||||| Sbjct: 98345 agtcccaggaactcttcttt 98326
>gb|AC114820.4| Mus musculus BAC clone RP23-70M6 from 18, complete sequence Length = 174470 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 tgcttcttccttccaaatgg 460 |||||||||||||||||||| Sbjct: 7279 tgcttcttccttccaaatgg 7298
>emb|AL596243.6| Human DNA sequence from clone RP13-551O16 on chromosome Xq25-26.3, complete sequence Length = 19532 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 tcttctttttccatccacttagcc 432 |||||||||| ||||||||||||| Sbjct: 5567 tcttcttttttcatccacttagcc 5544
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gtcgacctttgccgtggcccgcac 209 |||||||| ||||||||||||||| Sbjct: 1361550 gtcgacctgtgccgtggcccgcac 1361573
>gb|AC124917.4| Homo sapiens chromosome 1 clone RP5-910L7, complete sequence Length = 156168 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 agagtatatgggatctcttt 319 |||||||||||||||||||| Sbjct: 80931 agagtatatgggatctcttt 80950
>emb|AL031659.9|HS343K2 Human DNA sequence from clone RP3-343K2 on chromosome 20q11.22-12 Contains the 3' end of the GHRH gene for growth hormone releasing hormone, the RPN2 gene for ribophorin II, the 5' end of the C20orf132 gene, a ribososmal protein L13 (RPL13) pseudogene and a CpG island, complete sequence Length = 100998 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 tagctgcttcttccttccaa 456 |||||||||||||||||||| Sbjct: 60963 tagctgcttcttccttccaa 60944
>gb|AC099689.4| Homo sapiens chromosome 18, clone RP11-849I19, complete sequence Length = 201519 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gaaaatgaatttaaggttgaaata 131 |||||||||||| ||||||||||| Sbjct: 71004 gaaaatgaatttcaggttgaaata 71027
>emb|AJ719623.1| Gallus gallus mRNA for hypothetical protein, clone 4k14 Length = 2483 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 acagtatacagatgtggtcc 181 |||||||||||||||||||| Sbjct: 755 acagtatacagatgtggtcc 774
>emb|CR857171.1| Pongo pygmaeus mRNA; cDNA DKFZp469D0832 (from clone DKFZp469D0832) Length = 1737 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ccgcgagagcctgcagagag 303 |||||||||||||||||||| Sbjct: 51 ccgcgagagcctgcagagag 70
>gb|AC108700.4| Homo sapiens 3 BAC RP11-14B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155455 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 aacaaattgatggatttttt 493 |||||||||||||||||||| Sbjct: 68722 aacaaattgatggatttttt 68703
>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence Length = 179495 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 caaatacttcctttgttaaa 233 |||||||||||||||||||| Sbjct: 175433 caaatacttcctttgttaaa 175414
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 aggttattagggcagtccca 403 |||||||||||||||||||| Sbjct: 31592192 aggttattagggcagtccca 31592173
>dbj|AB210598.1| Ciona intestinalis mRNA for transcription factor protein, complete cds, clone: citb010f17 Length = 1537 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tcattgacaagcaagctaaa 34 |||||||||||||||||||| Sbjct: 51 tcattgacaagcaagctaaa 32
>gb|AC087255.1|AC087255 Caenorhabditis briggsae cosmid CB021H06, complete sequence Length = 110191 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 89 agctcttgaaatttttgccgaaaatgaa 116 |||||||||| ||| ||||||||||||| Sbjct: 103476 agctcttgaagtttgtgccgaaaatgaa 103503
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 aggttattagggcagtccca 403 |||||||||||||||||||| Sbjct: 5924 aggttattagggcagtccca 5905
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 aggttattagggcagtccca 403 |||||||||||||||||||| Sbjct: 105215 aggttattagggcagtccca 105196
>dbj|AK174748.1| Ciona intestinalis cDNA, clone:ciht018d04, full insert sequence Length = 1534 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tcattgacaagcaagctaaa 34 |||||||||||||||||||| Sbjct: 52 tcattgacaagcaagctaaa 33
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gtcgacctttgccgtggcccgcac 209 |||||||| ||||||||||||||| Sbjct: 1693058 gtcgacctgtgccgtggcccgcac 1693081
>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) Length = 896449 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 acaaattgatggattttttg 494 |||||||||||||||||||| Sbjct: 541400 acaaattgatggattttttg 541381
>gb|AC102452.7| Mus musculus chromosome 5, clone RP24-272L20, complete sequence Length = 183858 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 caaatacttcctttgttaaa 233 |||||||||||||||||||| Sbjct: 157141 caaatacttcctttgttaaa 157160
>gb|AF100956.1|AF100956 Mus musculus major histocompatibility locus class II region; Fas-binding protein Daxx (DAXX) gene, partial cds; Bing1 (BING1), tapasin (tapasin), RalGDS-like factor (RLF), KE2 (KE2), BING4 (BING4), beta1, 3-galactosyl transferase (beta1,3-galactosyl transferase), ribosomal protein subunit S18 (RPS18), Sacm21 (Sacm21), H2K1(b) (H2-K1(b)), RING1 (RING1), KE6a (KE6a), KE4 (KE4), RXRbeta (RXRbeta), collagen alpha-2 (XI) (COLA11A2), H2-O alpha (H2-Oalpha), RING3 (RING3), H2-M alpha (H2-M alpha), H2-M beta 2 (H2-M beta2), and H2-M beta1 (H2-M beta1) genes, complete cds; and LMP 2 gene, partial cds Length = 273800 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ctttccctgactctaaacgtctca 339 ||||||||||||||||||| |||| Sbjct: 116092 ctttccctgactctaaacggctca 116115
>gb|U34072.1|MMU34072 Mus musculus steroid dehydrogenase (Ke 6) gene, Ke 6a and Ke 6b alternatively spliced transcripts, complete cds Length = 3856 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 ctttccctgactctaaacgtctca 339 ||||||||||||||||||| |||| Sbjct: 252 ctttccctgactctaaacggctca 229
>gb|AC161148.7| Mus musculus BAC clone RP23-358L5 from chromosome 1, complete sequence Length = 181120 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 436 gtagctgcttcttccttccaaatg 459 ||||||||||||||||||| |||| Sbjct: 64053 gtagctgcttcttccttcctaatg 64076
>emb|AL845300.11| Mouse DNA sequence from clone RP23-397A17 on chromosome 2, complete sequence Length = 224818 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ctgcttcttccttccaaatg 459 |||||||||||||||||||| Sbjct: 144129 ctgcttcttccttccaaatg 144110
>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056, complete sequence Length = 102883 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 150 gacaagaccattacagtatacagatgtggtcc 181 |||||||| || || ||||||||||||||||| Sbjct: 44937 gacaagactatcacggtatacagatgtggtcc 44906 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,437,132 Number of Sequences: 3902068 Number of extensions: 6437132 Number of successful extensions: 125303 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125009 Number of HSP's gapped (non-prelim): 288 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)