ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7e08 |
|---|---|
| Clone Library Name | barley_pub |
>RIM15_YEAST (P43565) Serine/threonine-protein kinase RIM15 (EC 2.7.11.1)| Length = 1770 Score = 32.3 bits (72), Expect = 1.2 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Frame = +3 Query: 96 NADVYSCAAVDYT--LNQQFVQPQNMSFVPTMNAVEAPFMNFSSDQGSNSFSCSDFSWEN 269 N DV +A + + LN + + + +S T N S SNS S DF Sbjct: 1311 NTDVSELSAANLSPPLNHKNILSRKLSMSNTTNR---------SSNNSNS-SVHDFGAHT 1360 Query: 270 DIKTPDITSVLASIPTSTEVNESAFVQNNGSNSTAPPVMGNANVDLADL--EPYMKFLMD 443 + I SVL S+P E+ ++ NG+ +T + N+ L P+M+ D Sbjct: 1361 PVNKLSIASVLESVP-----QETGYITPNGTGTTTTSAKNSPNLKNLSLAIPPHMR---D 1412 Query: 444 DRSDESIDS 470 RS + DS Sbjct: 1413 RRSSKLNDS 1421
>AMO1_SCHPO (O74315) Nucleoporin-like protein amo1 (Aberrent microtubule| protein 1) Length = 475 Score = 31.6 bits (70), Expect = 2.1 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%) Frame = +3 Query: 147 FVQPQNMSFVPTMNAVEAPFMNFSSDQGSNSFSCSDFSWENDIKTP------DITSVLAS 308 F+Q FVP E+PF N +S ++ FS + + +N I+TP I + Sbjct: 364 FMQQPQGPFVPPNTTFESPFANVTSKISASGFSNDNPANKNIIQTPMFGSSNTIDGPINP 423 Query: 309 IPTST--EVNESAFVQNNGSNSTAPPVM 386 I S+ +++ + N+ N PP M Sbjct: 424 IGASSIQTLDDQVEMSNSNQNLAFPPEM 451
>RGA4_SCHPO (O74360) Probable Rho-type GTPase-activating protein 4| Length = 933 Score = 31.6 bits (70), Expect = 2.1 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Frame = +3 Query: 150 VQPQNMSFVPTMNAVEAPFMNFSSDQGSNSFSCSDFSWENDIKTPDITSVLASIPTSTEV 329 ++P+N SFV T + A +F S S SC F + I ++S +S+ + V Sbjct: 231 LKPKN-SFVKTSPSPLANGPSFRSANASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSV 289 Query: 330 NE----SAFVQNNGSNSTAPPVMGNANV 401 + AFVQ+ N T P + N +V Sbjct: 290 QQPVAYHAFVQSPTENGTLPQLPKNESV 317
>MGA2_YEAST (P40578) Protein MGA2| Length = 1113 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Frame = +3 Query: 129 YTLNQQ--FVQPQNMSFVPTMNAVEAPFMNFSSDQGSNSFSCSDFSWENDIKTPDITSVL 302 Y+++QQ +Q N+S ++ P S++GS SF+ +N ++T +T Sbjct: 413 YSISQQTDLLQNNNLSLNLSLPNQHIPSPTSMSEEGSESFNYHHRDNDNPVRTISLT--- 469 Query: 303 ASIPTSTEVNESAFVQNNGSNSTAPPV 383 +I +++N+ +NN N P+ Sbjct: 470 -NIEQQSQLNQRKRARNNLENDIGKPL 495
>PYRG_SULAC (Q4JAK8) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 529 Score = 30.8 bits (68), Expect = 3.5 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +3 Query: 297 VLASIPTSTEVNESAFV-QNNGSNSTAPPVMGNANVDLADLEPYMK---FLMDDRSDESI 464 VL+S+ T V F+ +++G N TA V NVD + PYM F+ DD ++ + Sbjct: 11 VLSSVGKGTIVASIGFLLKSSGYNVTAIKVDPYLNVDAGTMNPYMHGEVFVTDDGAETDL 70 Query: 465 D 467 D Sbjct: 71 D 71
>YQB4_CAEEL (Q09257) Hypothetical protein C30G12.4| Length = 258 Score = 30.4 bits (67), Expect = 4.6 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = -1 Query: 531 HQRSTGPCCRPHPGAHHSLECCQLT 457 HQ S P C P HS ECC LT Sbjct: 80 HQISPKPACPPSSLNSHSFECCSLT 104
>OR4D2_HUMAN (P58180) Olfactory receptor 4D2 (Olfactory receptor OR17-24)| (B-lymphocyte membrane protein BC2009) Length = 307 Score = 30.0 bits (66), Expect = 6.0 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = -2 Query: 626 LLMSRILIPFVYIYRHPATSIPSVETSRQGHVIKGPQVH 510 +++S I +P +Y+Y P T P + GH + P ++ Sbjct: 245 IVVSMIFVPSIYLYARPFTPFPMDKLVSIGHTVMTPMLN 283
>KCY_LACLA (Q9CEY1) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 220 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Frame = +3 Query: 273 IKTPDITSVLASIPTSTEVNESAF-----VQNNGSNSTAPPVMGNANVDLADLEPYMKFL 437 I+T ++T+ ++ I TE+ E + NG +G + ADL+ ++ Sbjct: 87 IRTNEVTNTVSKISAMTEIREFMVAEQQRIAKNGGIIMDGRDIGTVVLPKADLKIFLVAS 146 Query: 438 MDDRSDESIDSILSCDVPQDV 500 +D+R++ LS +P D+ Sbjct: 147 VDERAERRYKENLSKGIPTDL 167
>ACM2_CAEEL (Q09388) Probable muscarinic acetylcholine receptor gar-2| (G-protein linked acetylcholine receptor 2) Length = 627 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -1 Query: 612 NTYSLCLYIQAPSNL-NSLSRNQQTRACHQRSTGPCCRPHPGAHHSLE 472 NTYS + L N SR + + + ST PC P P +H SLE Sbjct: 299 NTYSNPNFSMISEQLTNGFSRQEPSSVIERESTAPCVSPEP-SHASLE 345
>YBC9_YEAST (P38201) Hypothetical 42.6 kDa protein in AAC2-RPL19B intergenic| region Length = 376 Score = 29.6 bits (65), Expect = 7.9 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 8/123 (6%) Frame = +3 Query: 168 SFVPTMNAVEAPFMNFSSDQ------GSNSFSCSDFSWENDIKTPDITSVLASIPTSTEV 329 SF P V +PF+ +++ G + + S+F + K T+ SI S Sbjct: 23 SFAPLNCDVNSPFLPINNNDINVNAYGDENLTYSNFLLSYNDKLATTTAKNNSINNSNSN 82 Query: 330 NESAFVQNNGSNSTAPPVMGNANVDLADLEPYMKFLMDDRSDESIDSILSCDV--PQDVV 503 N S +NN +N ++GN +A L Y L + + + I D+ P +V Sbjct: 83 NNSNNNKNNNNNHNNNNLLGNDISQMAFLLDYPSTLNEPQFAVNCKDIYRKDISTPSSLV 142 Query: 504 GNM 512 ++ Sbjct: 143 SSL 145
>NCKP1_RAT (P55161) Nck-associated protein 1 (NAP 1) (p125Nap1)| (Membrane-associated protein HEM-2) Length = 1128 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 20/97 (20%) Frame = -3 Query: 460 DSSERSSIRNFM--YGSKSARSTLALPITGGAVELLPLFWTNADSLTSVEVGMD------ 305 D SE S+ + YG K +L I+ EL L N D LT + D Sbjct: 832 DISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLTQMRTSFDKPDQMA 891 Query: 304 ------ASTD------VMSGVLISFSQLKSEQLKELL 230 +S D + GV++SF L E L+++L Sbjct: 892 ALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVL 928
>NCKP1_MOUSE (P28660) Nck-associated protein 1 (NAP 1) (p125Nap1)| (Membrane-associated protein HEM-2) (Brain protein H19) (MH19) Length = 1128 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 20/97 (20%) Frame = -3 Query: 460 DSSERSSIRNFM--YGSKSARSTLALPITGGAVELLPLFWTNADSLTSVEVGMD------ 305 D SE S+ + YG K +L I+ EL L N D LT + D Sbjct: 832 DISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLTQMRTSFDKPDQMA 891 Query: 304 ------ASTD------VMSGVLISFSQLKSEQLKELL 230 +S D + GV++SF L E L+++L Sbjct: 892 ALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVL 928
>NCKP1_HUMAN (Q9Y2A7) Nck-associated protein 1 (NAP 1) (p125Nap1)| (Membrane-associated protein HEM-2) Length = 1128 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 20/97 (20%) Frame = -3 Query: 460 DSSERSSIRNFM--YGSKSARSTLALPITGGAVELLPLFWTNADSLTSVEVGMD------ 305 D SE S+ + YG K +L I+ EL L N D LT + D Sbjct: 832 DISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLTQMRTSFDKPDQMA 891 Query: 304 ------ASTD------VMSGVLISFSQLKSEQLKELL 230 +S D + GV++SF L E L+++L Sbjct: 892 ALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVL 928 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,427,059 Number of Sequences: 219361 Number of extensions: 2097368 Number of successful extensions: 5807 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5804 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
