ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_195260.1| Oryza sativa (japonica cultivar-group) unknown ... 305 9e-80
2dbj|AK070874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 9e-80
3ref|XM_479647.1| Oryza sativa (japonica cultivar-group), mRNA 274 3e-70
4gb|AY110989.1| Zea mays CL5869_1 mRNA sequence 178 1e-41
5gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
6gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
10dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
11gb|AC166096.2| Mus musculus BAC clone RP24-467F14 from chromosom... 42 2.1
12gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
13gb|AC125406.4| Mus musculus BAC clone RP23-32C18 from chromosome... 40 8.2
14gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromoso... 40 8.2
15ref|XM_759599.1| Theileria parva strain Muguga RNA helicase-1 (T... 40 8.2
16ref|XM_949204.1| Theileria annulata strain Ankara hypothetical p... 40 8.2
17gb|AC109166.10| Mus musculus chromosome 7, clone RP23-310P1, com... 40 8.2
18emb|AL591344.1| Human DNA sequence from clone RP11-260H5 on chro... 40 8.2
19gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 8.2
20gb|AY169401.1| Squalus acanthias melanocortin 4 receptor (MC4) g... 40 8.2
21emb|AL133399.1| Human DNA sequence from clone RP1-305G21 on chro... 40 8.2
22emb|BX914220.7| Zebrafish DNA sequence from clone DKEYP-101F3 in... 40 8.2
23emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on ch... 40 8.2
24gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, com... 40 8.2
25gb|AC092042.2| Homo sapiens chromosome 3 clone RP11-136C24, comp... 40 8.2
26gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
27gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
30dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
31dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
32dbj|AK065753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
33emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in l... 40 8.2
34gb|AY109346.1| Zea mays CL5575_3 mRNA sequence 40 8.2
35gb|AY108765.1| Zea mays PCO088803 mRNA sequence 40 8.2
36gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
37emb|AL732360.12| Mouse DNA sequence from clone RP23-405B14 on ch... 40 8.2
38gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, comple... 40 8.2
39dbj|AP004608.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.2
40dbj|AP003971.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.2 
>ref|NM_195260.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0079H13.4), mRNA
          Length = 2042

 Score =  305 bits (154), Expect = 9e-80
 Identities = 247/278 (88%)
 Strand = Plus / Plus

                                                                        
Query: 25   gaagctatatctgatctgaaggtggacatcattgcgagcctacgaagcagattagatatc 84
            |||| |||||||||||| ||| ||||||||||  | |||||  |||||||||| ||||||
Sbjct: 1315 gaagttatatctgatctaaagttggacatcatcacaagcctgagaagcagattggatatc 1374

                                                                        
Query: 85   atccttgatgaggcagatgatgactctacaactaatgatgtggagaattcaccatctcag 144
            || || ||||||||||||||||||||||| |||||  || ||||||||||||  ||||||
Sbjct: 1375 atactagatgaggcagatgatgactctactactaacaatttggagaattcactgtctcag 1434

                                                                        
Query: 145  aaggttacccaagttaattttcatgagttgagagaaccttatagtttctcattccctaga 204
            ||||  |||||||||  ||||||||||||||||| |||||| |||||| |||||||||||
Sbjct: 1435 aaggccacccaagttgtttttcatgagttgagagtaccttacagtttcccattccctaga 1494

                                                                        
Query: 205  agaatcctgattccttggttagctggctcctatatttgtgactacttgcaacaatcagag 264
            ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 1495 agaattctgataccttggttggctggctcctatatttgtgactacttgcaacaatcagaa 1554

                                                  
Query: 265  acaacgaaggacgcaatggagcgctgcaaggaagtgat 302
            |||||| |||| || |||||||||||||||||||||||
Sbjct: 1555 acaacggaggatgccatggagcgctgcaaggaagtgat 1592



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 370  ctagaatcattttgggatgtggtgcctggagctt 403
            |||| ||| |||||||||||||| ||||||||||
Sbjct: 1657 ctaggatcgttttgggatgtggtacctggagctt 1690
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>dbj|AK070874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F23, full
            insert sequence
          Length = 1755

 Score =  305 bits (154), Expect = 9e-80
 Identities = 247/278 (88%)
 Strand = Plus / Plus

                                                                        
Query: 25   gaagctatatctgatctgaaggtggacatcattgcgagcctacgaagcagattagatatc 84
            |||| |||||||||||| ||| ||||||||||  | |||||  |||||||||| ||||||
Sbjct: 1008 gaagttatatctgatctaaagttggacatcatcacaagcctgagaagcagattggatatc 1067

                                                                        
Query: 85   atccttgatgaggcagatgatgactctacaactaatgatgtggagaattcaccatctcag 144
            || || ||||||||||||||||||||||| |||||  || ||||||||||||  ||||||
Sbjct: 1068 atactagatgaggcagatgatgactctactactaacaatttggagaattcactgtctcag 1127

                                                                        
Query: 145  aaggttacccaagttaattttcatgagttgagagaaccttatagtttctcattccctaga 204
            ||||  |||||||||  ||||||||||||||||| |||||| |||||| |||||||||||
Sbjct: 1128 aaggccacccaagttgtttttcatgagttgagagtaccttacagtttcccattccctaga 1187

                                                                        
Query: 205  agaatcctgattccttggttagctggctcctatatttgtgactacttgcaacaatcagag 264
            ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 1188 agaattctgataccttggttggctggctcctatatttgtgactacttgcaacaatcagaa 1247

                                                  
Query: 265  acaacgaaggacgcaatggagcgctgcaaggaagtgat 302
            |||||| |||| || |||||||||||||||||||||||
Sbjct: 1248 acaacggaggatgccatggagcgctgcaaggaagtgat 1285



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 370  ctagaatcattttgggatgtggtgcctggagctt 403
            |||| ||| |||||||||||||| ||||||||||
Sbjct: 1350 ctaggatcgttttgggatgtggtacctggagctt 1383
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>ref|XM_479647.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1266

 Score =  274 bits (138), Expect = 3e-70
 Identities = 243/278 (87%)
 Strand = Plus / Plus

                                                                        
Query: 25   gaagctatatctgatctgaaggtggacatcattgcgagcctacgaagcagattagatatc 84
            |||| |||||||||||| ||| ||||||||||  | |||||  |||||||||| || |||
Sbjct: 724  gaagttatatctgatctaaagctggacatcatcacaagcctgagaagcagattggacatc 783

                                                                        
Query: 85   atccttgatgaggcagatgatgactctacaactaatgatgtggagaattcaccatctcag 144
            || || ||||||||||||||||||||||| |||||  || ||||||||||||  ||||||
Sbjct: 784  atactagatgaggcagatgatgactctactactaacaatttggagaattcactgtctcag 843

                                                                        
Query: 145  aaggttacccaagttaattttcatgagttgagagaaccttatagtttctcattccctaga 204
            ||||  || ||||||  ||||||||||||||||| |||||| |||||  |||||||||||
Sbjct: 844  aaggccactcaagttgtttttcatgagttgagagcaccttacagttttccattccctaga 903

                                                                        
Query: 205  agaatcctgattccttggttagctggctcctatatttgtgactacttgcaacaatcagag 264
            ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 904  agaattctgataccttggttggctggctcctatatttgtgactacttgcaacaatcagaa 963

                                                  
Query: 265  acaacgaaggacgcaatggagcgctgcaaggaagtgat 302
            |||| | |||| || |||||||||||||||||||||||
Sbjct: 964  acaatggaggatgccatggagcgctgcaaggaagtgat 1001



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 363  tgcgacactagaatcattttgggatgtggtgcctggagctt 403
            |||||| |||| ||| |||||||||||||| ||||||||||
Sbjct: 1059 tgcgacgctaggatcgttttgggatgtggtccctggagctt 1099
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>gb|AY110989.1| Zea mays CL5869_1 mRNA sequence
          Length = 917

 Score =  178 bits (90), Expect = 1e-41
 Identities = 251/304 (82%), Gaps = 3/304 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttaggccc-aaagaatctatttcggaagctatatctgatctgaaggtggacatcattgcg 60
           |||||||| |||||||||||||| ||||||||||||||||| |||| ||||||| || | 
Sbjct: 125 ttaggccctaaagaatctatttcagaagctatatctgatctaaaggcggacatcgttaca 184

                                                                       
Query: 61  agcctacgaagcagattagatatcatccttgatgaggcagatgatgactctacaactaat 120
           || ||     || | || |||||||||||||||||||||||||||| | || | |||  |
Sbjct: 185 agtctnnnnngccggttggatatcatccttgatgaggcagatgatggccctgccactgct 244

                                                                       
Query: 121 gatgtggagaattcaccatctcagaaggttacccaagttaattttcatgagttgagagaa 180
           || |||||||| ||||||||||||||||  || |||||||  ||||||||||||||||||
Sbjct: 245 gaagtggagaaatcaccatctcagaaggccactcaagttatatttcatgagttgagagaa 304

                                                                       
Query: 181 ccttatagtttctcattccctagaagaatcctgattccttgg-ttagctggctcctatat 239
           ||||| ||     ||||||| |||||  ||||||| |||||| | ||| ||| ||||| |
Sbjct: 305 ccttacagnnnnncattcccgagaagggtcctgataccttggctgagc-ggcacctatgt 363

                                                                       
Query: 240 ttgtgactacttgcaacaatcagagacaacgaaggacgcaatggagcgctgcaaggaagt 299
           |||||| |||||||||||| |||||||| |  |||| ||| |||| |||| |||||||||
Sbjct: 364 ttgtgattacttgcaacaaccagagacagcagaggatgcagtggatcgcttcaaggaagt 423

               
Query: 300 gata 303
           ||||
Sbjct: 424 gata 427



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 369 actagaatcattttgggatgtggtgcctgga 399
           ||||||||| ||||||||| |||||||||||
Sbjct: 499 actagaatccttttgggatatggtgcctgga 529
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>gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0079H13 map E60284SA, complete sequence
          Length = 116863

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                         
Query: 175   agagaaccttatagtttctcattccctagaagaatcctgattccttggttagctggctcc 234
             |||| |||||| |||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 28236 agagtaccttacagtttcccattccctagaagaattctgataccttggttggctggctcc 28295

                                                 
Query: 235   tatatttgtgactacttgcaacaatcagagacaacg 270
             ||||||||||||||||||||||||||||| ||||||
Sbjct: 28296 tatatttgtgactacttgcaacaatcagaaacaacg 28331



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Plus

                                                                         
Query: 47    tggacatcattgcgagcctacgaagcagattagatatcatccttgatgaggcagatgatg 106
             ||||||||||  | |||||  |||||||||| |||||||| || ||||||||||||||||
Sbjct: 27888 tggacatcatcacaagcctgagaagcagattggatatcatactagatgaggcagatgatg 27947

                                                                         
Query: 107   actctacaactaatgatgtggagaattcaccatctcagaaggttacccaagttaattttc 166
             ||||||| |||||  || ||||||||||||  ||||||||||  |||||||||  |||||
Sbjct: 27948 actctactactaacaatttggagaattcactgtctcagaaggccacccaagttgtttttc 28007

                       
Query: 167   atgagttgag 176
             ||||||||||
Sbjct: 28008 atgagttgag 28017



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 280   atggagcgctgcaaggaagtgat 302
             |||||||||||||||||||||||
Sbjct: 28868 atggagcgctgcaaggaagtgat 28890



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 370   ctagaatcattttgggatgtggtgcctggagctt 403
             |||| ||| |||||||||||||| ||||||||||
Sbjct: 28955 ctaggatcgttttgggatgtggtacctggagctt 28988
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12
              map E60284SA, complete sequence
          Length = 139190

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                          
Query: 175    agagaaccttatagtttctcattccctagaagaatcctgattccttggttagctggctcc 234
              |||| |||||| |||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 124181 agagtaccttacagtttcccattccctagaagaattctgataccttggttggctggctcc 124122

                                                  
Query: 235    tatatttgtgactacttgcaacaatcagagacaacg 270
              ||||||||||||||||||||||||||||| ||||||
Sbjct: 124121 tatatttgtgactacttgcaacaatcagaaacaacg 124086



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                          
Query: 47     tggacatcattgcgagcctacgaagcagattagatatcatccttgatgaggcagatgatg 106
              ||||||||||  | |||||  |||||||||| |||||||| || ||||||||||||||||
Sbjct: 124529 tggacatcatcacaagcctgagaagcagattggatatcatactagatgaggcagatgatg 124470

                                                                          
Query: 107    actctacaactaatgatgtggagaattcaccatctcagaaggttacccaagttaattttc 166
              ||||||| |||||  || ||||||||||||  ||||||||||  |||||||||  |||||
Sbjct: 124469 actctactactaacaatttggagaattcactgtctcagaaggccacccaagttgtttttc 124410

                        
Query: 167    atgagttgag 176
              ||||||||||
Sbjct: 124409 atgagttgag 124400



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 280    atggagcgctgcaaggaagtgat 302
              |||||||||||||||||||||||
Sbjct: 123549 atggagcgctgcaaggaagtgat 123527



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 370    ctagaatcattttgggatgtggtgcctggagctt 403
              |||| ||| |||||||||||||| ||||||||||
Sbjct: 123462 ctaggatcgttttgggatgtggtacctggagctt 123429
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                           
Query: 175     agagaaccttatagtttctcattccctagaagaatcctgattccttggttagctggctcc 234
               |||| |||||| |||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 5799684 agagtaccttacagtttcccattccctagaagaattctgataccttggttggctggctcc 5799743

                                                   
Query: 235     tatatttgtgactacttgcaacaatcagagacaacg 270
               ||||||||||||||||||||||||||||| ||||||
Sbjct: 5799744 tatatttgtgactacttgcaacaatcagaaacaacg 5799779



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Plus

                                                                           
Query: 47      tggacatcattgcgagcctacgaagcagattagatatcatccttgatgaggcagatgatg 106
               ||||||||||  | |||||  |||||||||| |||||||| || ||||||||||||||||
Sbjct: 5799336 tggacatcatcacaagcctgagaagcagattggatatcatactagatgaggcagatgatg 5799395

                                                                           
Query: 107     actctacaactaatgatgtggagaattcaccatctcagaaggttacccaagttaattttc 166
               ||||||| |||||  || ||||||||||||  ||||||||||  |||||||||  |||||
Sbjct: 5799396 actctactactaacaatttggagaattcactgtctcagaaggccacccaagttgtttttc 5799455

                         
Query: 167     atgagttgag 176
               ||||||||||
Sbjct: 5799456 atgagttgag 5799465



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 280     atggagcgctgcaaggaagtgat 302
               |||||||||||||||||||||||
Sbjct: 5800316 atggagcgctgcaaggaagtgat 5800338



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 370     ctagaatcattttgggatgtggtgcctggagctt 403
               |||| ||| |||||||||||||| ||||||||||
Sbjct: 5800403 ctaggatcgttttgggatgtggtacctggagctt 5800436
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                           
Query: 175     agagaaccttatagtttctcattccctagaagaatcctgattccttggttagctggctcc 234
               |||| |||||| |||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 5800433 agagtaccttacagtttcccattccctagaagaattctgataccttggttggctggctcc 5800492

                                                   
Query: 235     tatatttgtgactacttgcaacaatcagagacaacg 270
               ||||||||||||||||||||||||||||| ||||||
Sbjct: 5800493 tatatttgtgactacttgcaacaatcagaaacaacg 5800528



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/130 (86%)
 Strand = Plus / Plus

                                                                           
Query: 47      tggacatcattgcgagcctacgaagcagattagatatcatccttgatgaggcagatgatg 106
               ||||||||||  | |||||  |||||||||| |||||||| || ||||||||||||||||
Sbjct: 5800085 tggacatcatcacaagcctgagaagcagattggatatcatactagatgaggcagatgatg 5800144

                                                                           
Query: 107     actctacaactaatgatgtggagaattcaccatctcagaaggttacccaagttaattttc 166
               ||||||| |||||  || ||||||||||||  ||||||||||  |||||||||  |||||
Sbjct: 5800145 actctactactaacaatttggagaattcactgtctcagaaggccacccaagttgtttttc 5800204

                         
Query: 167     atgagttgag 176
               ||||||||||
Sbjct: 5800205 atgagttgag 5800214



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 280     atggagcgctgcaaggaagtgat 302
               |||||||||||||||||||||||
Sbjct: 5801065 atggagcgctgcaaggaagtgat 5801087



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 370     ctagaatcattttgggatgtggtgcctggagctt 403
               |||| ||| |||||||||||||| ||||||||||
Sbjct: 5801152 ctaggatcgttttgggatgtggtacctggagctt 5801185
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 7e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                         
Query: 175   agagaaccttatagtttctcattccctagaagaatcctgattccttggttagctggctcc 234
             |||| |||||| |||||  |||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 76808 agagcaccttacagttttccattccctagaagaattctgataccttggttggctggctcc 76867

                                               
Query: 235   tatatttgtgactacttgcaacaatcagagacaa 268
             ||||||||||||||||||||||||||||| ||||
Sbjct: 76868 tatatttgtgactacttgcaacaatcagaaacaa 76901



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 110/130 (84%)
 Strand = Plus / Plus

                                                                         
Query: 47    tggacatcattgcgagcctacgaagcagattagatatcatccttgatgaggcagatgatg 106
             ||||||||||  | |||||  |||||||||| || ||||| || ||||||||||||||||
Sbjct: 76420 tggacatcatcacaagcctgagaagcagattggacatcatactagatgaggcagatgatg 76479

                                                                         
Query: 107   actctacaactaatgatgtggagaattcaccatctcagaaggttacccaagttaattttc 166
             ||||||| |||||  || ||||||||||||  ||||||||||  || ||||||  |||||
Sbjct: 76480 actctactactaacaatttggagaattcactgtctcagaaggccactcaagttgtttttc 76539

                       
Query: 167   atgagttgag 176
             ||||||||||
Sbjct: 76540 atgagttgag 76549



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 363   tgcgacactagaatcattttgggatgtggtgcctggagctt 403
             |||||| |||| ||| |||||||||||||| ||||||||||
Sbjct: 77670 tgcgacgctaggatcgttttgggatgtggtccctggagctt 77710



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 280   atggagcgctgcaaggaagtgat 302
             |||||||||||||||||||||||
Sbjct: 77590 atggagcgctgcaaggaagtgat 77612
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score =  123 bits (62), Expect = 7e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                         
Query: 175   agagaaccttatagtttctcattccctagaagaatcctgattccttggttagctggctcc 234
             |||| |||||| |||||  |||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 76808 agagcaccttacagttttccattccctagaagaattctgataccttggttggctggctcc 76867

                                               
Query: 235   tatatttgtgactacttgcaacaatcagagacaa 268
             ||||||||||||||||||||||||||||| ||||
Sbjct: 76868 tatatttgtgactacttgcaacaatcagaaacaa 76901



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 110/130 (84%)
 Strand = Plus / Plus

                                                                         
Query: 47    tggacatcattgcgagcctacgaagcagattagatatcatccttgatgaggcagatgatg 106
             ||||||||||  | |||||  |||||||||| || ||||| || ||||||||||||||||
Sbjct: 76420 tggacatcatcacaagcctgagaagcagattggacatcatactagatgaggcagatgatg 76479

                                                                         
Query: 107   actctacaactaatgatgtggagaattcaccatctcagaaggttacccaagttaattttc 166
             ||||||| |||||  || ||||||||||||  ||||||||||  || ||||||  |||||
Sbjct: 76480 actctactactaacaatttggagaattcactgtctcagaaggccactcaagttgtttttc 76539

                       
Query: 167   atgagttgag 176
             ||||||||||
Sbjct: 76540 atgagttgag 76549



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 363   tgcgacactagaatcattttgggatgtggtgcctggagctt 403
             |||||| |||| ||| |||||||||||||| ||||||||||
Sbjct: 77670 tgcgacgctaggatcgttttgggatgtggtccctggagctt 77710



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 280   atggagcgctgcaaggaagtgat 302
             |||||||||||||||||||||||
Sbjct: 77590 atggagcgctgcaaggaagtgat 77612
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>gb|AC166096.2| Mus musculus BAC clone RP24-467F14 from chromosome 9, complete sequence
          Length = 142142

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    actctacaactaatgatgtgg 127
              |||||||||||||||||||||
Sbjct: 133693 actctacaactaatgatgtgg 133713
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>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0542B04,
              complete sequence
          Length = 182823

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 574    agagtaattcttgctatgtt 593
              ||||||||||||||||||||
Sbjct: 149362 agagtaattcttgctatgtt 149343
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>gb|AC125406.4| Mus musculus BAC clone RP23-32C18 from chromosome 19, complete sequence
          Length = 208557

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 317    aagtggagaactcctccattgttg 340
              |||||||| |||||||||||||||
Sbjct: 146036 aagtggagcactcctccattgttg 146013
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>gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromosome 7, complete
             sequence
          Length = 199758

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   gattccttggttagctggct 232
             ||||||||||||||||||||
Sbjct: 62091 gattccttggttagctggct 62110
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>ref|XM_759599.1| Theileria parva strain Muguga RNA helicase-1 (TP02_0123) partial
           mRNA
          Length = 1478

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  atccttgatgaggcagatga 104
           ||||||||||||||||||||
Sbjct: 741 atccttgatgaggcagatga 760
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>ref|XM_949204.1| Theileria annulata strain Ankara hypothetical protein (TA20690)
           partial mRNA
          Length = 2031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 agaactcctccattgttgaa 342
           ||||||||||||||||||||
Sbjct: 538 agaactcctccattgttgaa 519
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>gb|AC109166.10| Mus musculus chromosome 7, clone RP23-310P1, complete sequence
          Length = 168878

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   atgtgttcagggagagcaca 476
             ||||||||||||||||||||
Sbjct: 38405 atgtgttcagggagagcaca 38424
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>emb|AL591344.1| Human DNA sequence from clone RP11-260H5 on chromosome 6 Contains the
             3' end of the gene for RU2 (RU2S), complete sequence
          Length = 63676

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   gagaattcaccatctcagaa 146
             ||||||||||||||||||||
Sbjct: 35190 gagaattcaccatctcagaa 35171
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 501     tgccttgtttgtgctcctgg 520
               ||||||||||||||||||||
Sbjct: 4119387 tgccttgtttgtgctcctgg 4119368
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>gb|AY169401.1| Squalus acanthias melanocortin 4 receptor (MC4) gene, complete cds
          Length = 996

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  tgatgaggcagatgatgact 109
           ||||||||||||||||||||
Sbjct: 592 tgatgaggcagatgatgact 573
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>emb|AL133399.1| Human DNA sequence from clone RP1-305G21 on chromosome 11p13 Contains a
             pseudogene similar to S100C, STSs and GSSs, complete
             sequence
          Length = 82404

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 313   acagaagtggagaactcctccattgttg 340
             |||||| |||||||||||||| ||||||
Sbjct: 44228 acagaaatggagaactcctcccttgttg 44255
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>emb|BX914220.7| Zebrafish DNA sequence from clone DKEYP-101F3 in linkage group 6,
             complete sequence
          Length = 94202

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   ttgaaccagaaaccgcagca 357
             ||||||||||||||||||||
Sbjct: 51086 ttgaaccagaaaccgcagca 51067
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>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains
             part of the gene for a novel protein (likely ortholog to
             homo sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   agtgatatcactggaaacag 316
             ||||||||||||||||||||
Sbjct: 45363 agtgatatcactggaaacag 45382
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>gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, complete sequence
          Length = 149660

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  ggatgtggtgcctggagctt 403
            ||||||||||||||||||||
Sbjct: 5268 ggatgtggtgcctggagctt 5249
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>gb|AC092042.2| Homo sapiens chromosome 3 clone RP11-136C24, complete sequence
          Length = 171974

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 315   agaagtggagaactcctccattgt 338
             ||||| ||||||||||||||||||
Sbjct: 36586 agaagaggagaactcctccattgt 36563
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>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09,
              complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    agagtaattcttgctatgtt 593
              ||||||||||||||||||||
Sbjct: 131353 agagtaattcttgctatgtt 131372
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>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09,
              complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    agagtaattcttgctatgtt 593
              ||||||||||||||||||||
Sbjct: 131353 agagtaattcttgctatgtt 131372
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 574      agagtaattcttgctatgtt 593
                ||||||||||||||||||||
Sbjct: 20304849 agagtaattcttgctatgtt 20304830
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 328      tcctccattgttgaaccaga 347
                ||||||||||||||||||||
Sbjct: 15355537 tcctccattgttgaaccaga 15355518
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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1299_A11
          Length = 160099

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  tcctccattgttgaaccaga 347
            ||||||||||||||||||||
Sbjct: 4829 tcctccattgttgaaccaga 4810
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    tcctccattgttgaaccaga 347
              ||||||||||||||||||||
Sbjct: 134726 tcctccattgttgaaccaga 134707
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>dbj|AK065753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036G07, full
            insert sequence
          Length = 2214

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 574  agagtaattcttgctatgtt 593
            ||||||||||||||||||||
Sbjct: 2034 agagtaattcttgctatgtt 2015
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>emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in linkage group 4, complete
              sequence
          Length = 230105

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 528    tctacttggatttatgtttc 547
              ||||||||||||||||||||
Sbjct: 178716 tctacttggatttatgtttc 178697
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>gb|AY109346.1| Zea mays CL5575_3 mRNA sequence
          Length = 1305

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 386 atgtggtgcctggagcttcc 405
           ||||||||||||||||||||
Sbjct: 660 atgtggtgcctggagcttcc 679
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>gb|AY108765.1| Zea mays PCO088803 mRNA sequence
          Length = 704

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 279 aatggagcgctgcaaggaag 298
           ||||||||||||||||||||
Sbjct: 176 aatggagcgctgcaaggaag 195
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 574      agagtaattcttgctatgtt 593
                ||||||||||||||||||||
Sbjct: 20615088 agagtaattcttgctatgtt 20615069
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>emb|AL732360.12| Mouse DNA sequence from clone RP23-405B14 on chromosome X, complete
              sequence
          Length = 197398

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 585    tgctatgttttgtgtatctt 604
              ||||||||||||||||||||
Sbjct: 175796 tgctatgttttgtgtatctt 175777
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>gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, complete sequence
          Length = 170293

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    gaaccttatagtttctcatt 197
              ||||||||||||||||||||
Sbjct: 128077 gaaccttatagtttctcatt 128058
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>dbj|AP004608.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G23, complete
             sequences
          Length = 65900

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctggaaacagaagtggagaa 326
             ||||||||||||||||||||
Sbjct: 25713 ctggaaacagaagtggagaa 25732
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>dbj|AP003971.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-850O8, complete
              sequence
          Length = 147440

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    ctggaaacagaagtggagaa 326
              ||||||||||||||||||||
Sbjct: 142113 ctggaaacagaagtggagaa 142132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,630,351
Number of Sequences: 3902068
Number of extensions: 5630351
Number of successful extensions: 147015
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146747
Number of HSP's gapped (non-prelim): 267
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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