ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X74545.1|TAATP2 T.aestivum atp-2 mRNA for ATP synthase beta ... 54 2e-05
2emb|X58498.1|HBATPB H.brasiliensis mRNA for mitochondrial ATP sy... 42 0.065
3ref|NM_192090.1| Oryza sativa (japonica cultivar-group), predic... 38 1.0
4dbj|AK071414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.0
5dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.0

>emb|X74545.1|TAATP2 T.aestivum atp-2 mRNA for ATP synthase beta subunit
          Length = 1891

 Score = 54.0 bits (27), Expect = 2e-05
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 1    tactgtgttgtcacgatcgattnctgagctgggcattt 38
            ||||||||||||||||  |||| |||||||||||||||
Sbjct: 1235 tactgtgttgtcacgacagatttctgagctgggcattt 1272



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>emb|X58498.1|HBATPB H.brasiliensis mRNA for mitochondrial ATP synthase beta-subunit
          Length = 2021

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 2    actgtgttgtcacgatcgattnctgagctggg 33
            |||||||||||||||  |||| ||||||||||
Sbjct: 1267 actgtgttgtcacgacagatttctgagctggg 1298



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>ref|NM_192090.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                          
Query: 1    tactgtgttgtcacgatcgattnctgagct 30
            ||||||||||||||||  |||| |||||||
Sbjct: 1224 tactgtgttgtcacgacagatttctgagct 1253



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>dbj|AK071414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093I16, full
            insert sequence
          Length = 1688

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                          
Query: 1    tactgtgttgtcacgatcgattnctgagct 30
            ||||||||||||||||  |||| |||||||
Sbjct: 1046 tactgtgttgtcacgacagatttctgagct 1075



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>dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A02, full
            insert sequence
          Length = 2050

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                          
Query: 1    tactgtgttgtcacgatcgattnctgagct 30
            ||||||||||||||||  |||| |||||||
Sbjct: 1341 tactgtgttgtcacgacagatttctgagct 1370


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,587
Number of Sequences: 3902068
Number of extensions: 125587
Number of successful extensions: 27731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27726
Number of HSP's gapped (non-prelim): 5
length of query: 38
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 18
effective length of database: 17,155,003,908
effective search space: 308790070344
effective search space used: 308790070344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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