>KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched krueppel-like|
           factor) (Colon krueppel-like factor) (Transcription
           factor BTEB2) (Basic transcription element-binding
           protein 2) (BTE-binding protein 2) (GC box-binding
           protein 2)
          Length = 457

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 235 MRKNLNATELRDTSSVNYNWAPSGISSNTHKSGVPKSFVRKGNGAHP 375
           M  + N T   DT +V+ + A +G+  NTH S VP++ V++  G  P
Sbjct: 239 MPSSTNQTAAMDTLNVSMSAAMAGL--NTHTSAVPQTAVKQFQGMPP 283

>YM11_YEAST (P39523) Hypothetical 105.9 kDa protein in RPL15B-GCR3 intergenic|
           region
          Length = 943

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 40  RNPPENPLAQSVPNFSDFRKENTKPSAGHSRATARAQ 150
           + PP+ P   S+ N   +  +N +P AGH + + R Q
Sbjct: 338 QQPPQQPRTLSLTNGPRYSPQNPRPFAGHQQISQRQQ 374

>GLPK_MYCTU (O69664) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol|
           3-phosphotransferase) (Glycerokinase) (GK)
          Length = 517

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 341 FGTPDLWVLLEIPEGAQ--L*FTDEVSLNSVAFKFFLIDCDPLDW 213
           FGTPD WVL  +  G +  +  TD  +    A +  L+D + LDW
Sbjct: 173 FGTPDTWVLWNLTGGPRGGVHVTDVTN----ASRTMLMDLETLDW 213

>Y686_METJA (Q58099) Hypothetical protein MJ0686|
          Length = 580

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 189 VKEYFESRPIKGITVDEEKLKCY*I-KGHFISELQLGSLRN 308
           VKE  E +  KG++ DE   K   I KGHFI+E     LRN
Sbjct: 506 VKEMIEIQKNKGLSEDEAVNKVKEILKGHFINEEMFEILRN 546

>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit|
           (eIF3 p90) (Cell cycle regulation and translation
           initiation protein)
          Length = 763

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 50  QKILLHSQFPISPTSERKIQSHQLVIAELLQGLSQKVFPVVKA 178
           + I++      SP + +K + HQL I ++  GL    FPV+K+
Sbjct: 290 EPIIVEEDNEFSPFT-KKNEGHQLCIWDIASGLLMATFPVIKS 331

>YR748_MIMIV (Q5UP04) Putative ankyrin repeat protein R748|
          Length = 877

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 111 LCIFLSEVGEIGN*LCKRIFWWVPAICITGSYSS*RM 1
           L   L+ + EI N +  +  W +  IC+TGSY++ +M
Sbjct: 22  LIAILTYLMEIKNKMTNKELWKIRHICLTGSYNNNQM 58

>GLPK_MYCLE (Q9CB81) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol|
           3-phosphotransferase) (Glycerokinase) (GK)
          Length = 508

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 341 FGTPDLWVLLEIPEGAQ--L*FTDEVSLNSVAFKFFLIDCDPLDW 213
           FGTPD W+L  +  G +  +  TD  +    A +  L+D + LDW
Sbjct: 164 FGTPDTWLLWNLTGGPRGGVHVTDVTN----ASRTMLMDLEKLDW 204

>YDDP_ECOLI (P77268) Hypothetical ABC transporter ATP-binding protein yddP|
          Length = 328

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 12  NCKIQLCKSQEPTRKSSCTVSSQFLRLQKGKYKA 113
           +C+ QL  + EPT     TV  Q LRL K K +A
Sbjct: 172 SCEPQLIIADEPTTALDVTVQLQVLRLLKHKARA 205

>Y1779_PASMU (Q9CK55) Hypothetical protein PM1779|
          Length = 136

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 229 QSMRKNLNATELRDTSSVNYNWAPSGISSNTHKSGV--PKSFVRKGNGAHP 375
           +++ +++ A+ ++ T+  N      G   + H SG+  P+ ++ KGNGA+P
Sbjct: 6   KALSRSVIASSIQGTTKTN------GGHRSRHSSGIFLPQIYLSKGNGAYP 50

>GLYM_YEAST (P37292) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 490

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 247 SFSSSTVIPLIG--LDSKYSLTLQLCFYYGKNFLAEPLQ*LCYDQLMALY 104
           +F+S  V+ L+G  L +KYS       YYG N + +  + LC  + + LY
Sbjct: 62  NFTSKAVMDLLGSELQNKYSEGYPGERYYGGNEIIDKSESLCQARALELY 111

>LYTH_STAS1 (Q49Y70) Probable cell-wall amidase lytH precursor (EC 3.5.1.-)|
          Length = 291

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 241 KNLNATELRDTSSV---NYNWAPSGISSNTHKSGVPKSFVRK 357
           KN NA  L+D + V    +  +  G SSNTHK    K +  K
Sbjct: 110 KNPNAKPLKDKTIVLDPGHGGSDQGASSNTHKKSKEKVYTLK 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.121    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,149,568
Number of Sequences: 219361
Number of extensions: 891287
Number of successful extensions: 1646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)