ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_479164.1| Oryza sativa (japonica cultivar-group), mRNA 153 5e-34
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
3dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
4dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
5dbj|AK120310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
6dbj|AK109921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
7gb|AC182019.3| Felis catus clone RP86-75P21, complete sequence 46 0.083
8emb|CR749179.8| Zebrafish DNA sequence from clone DKEY-33A13 in ... 44 0.33
9emb|AL928964.7| Zebrafish DNA sequence from clone CH211-127I19, ... 44 0.33
10emb|AL359172.19| Human DNA sequence from clone RP11-147A14 on ch... 42 1.3
11gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Ho... 42 1.3
12emb|AL354872.9| Human DNA sequence from clone RP11-42O15 on chro... 42 1.3
13gb|AC158331.1| Homo sapiens chromosome 15 clone WI2-3304F23, com... 42 1.3
14gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequ... 42 1.3
15emb|CR376850.6| Zebrafish DNA sequence from clone DKEY-246K9 in ... 42 1.3
16emb|AL832195.1|HSM803502 Homo sapiens mRNA; cDNA DKFZp686C072 (f... 42 1.3
17gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, com... 40 5.1
18gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 5.1
19gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 5.1
20gb|AC112274.4| Mus musculus BAC clone RP24-125F23 from chromosom... 40 5.1
21gb|AC121984.3| Mus musculus BAC clone RP24-292L23 from chromosom... 40 5.1
22gb|AC124218.17| Medicago truncatula clone mth2-30b20, complete s... 40 5.1
23gb|BC091010.1| Xenopus tropicalis MGC107814 protein, mRNA (cDNA ... 40 5.1
24gb|AE014235.1| Streptococcus agalactiae 2603V/R section 45 of 10... 40 5.1
25ref|NM_001030403.1| Xenopus tropicalis MGC107814 protein (MGC107... 40 5.1
26emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 40 5.1
27emb|CR735112.10| Zebrafish DNA sequence from clone CH211-222C11 ... 40 5.1
28gb|AC092420.2| Homo sapiens chromosome 3 clone RP11-435M24, comp... 40 5.1
29gb|AC018517.7| Homo sapiens, clone RP11-115N12, complete sequence 40 5.1
30gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome 40 5.1
31gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.1
32gb|AC007483.7|AC007483 Homo sapiens, clone RP11-72A1, complete s... 40 5.1
33gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Can... 40 5.1
34gb|AC009223.2| Homo sapiens BAC clone RP11-24K2 from 2, complete... 40 5.1
35gb|AC018359.7|AC018359 Homo sapiens 3 BAC RP11-35C18 (Roswell Pa... 40 5.1
36ref|NM_211182.1| Eremothecium gossypii AFR280Wp (AFR280W), mRNA 40 5.1
37gb|AC145743.4| Mus musculus BAC clone RP24-171K11 from 3, comple... 40 5.1

>ref|XM_479164.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4101

 Score =  153 bits (77), Expect = 5e-34
 Identities = 161/189 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1    cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60
            ||||| ||||| || ||||| ||  |||||||||| || ||||| | |||||| ||||||
Sbjct: 2779 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 2838

                                                                        
Query: 61   cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120
            ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| ||||||
Sbjct: 2839 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 2898

                                                                        
Query: 121  ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180
            ||||  ||||||||| || ||||| | |||||||||||||||  ||||||||| ||||| 
Sbjct: 2899 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 2958

                     
Query: 181  attgaagag 189
            |||||||||
Sbjct: 2959 attgaagag 2967



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 340  aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383
            ||||||||| | ||||||||||||| ||||||||||| ||||||
Sbjct: 3151 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 3194



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  153 bits (77), Expect = 5e-34
 Identities = 161/189 (85%)
 Strand = Plus / Plus

                                                                            
Query: 1        cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60
                ||||| ||||| || ||||| ||  |||||||||| || ||||| | |||||| ||||||
Sbjct: 25333810 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 25333869

                                                                            
Query: 61       cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120
                ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| ||||||
Sbjct: 25333870 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 25333929

                                                                            
Query: 121      ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180
                ||||  ||||||||| || ||||| | |||||||||||||||  ||||||||| ||||| 
Sbjct: 25333930 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 25333989

                         
Query: 181      attgaagag 189
                |||||||||
Sbjct: 25333990 attgaagag 25333998



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 340      aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383
                ||||||||| | ||||||||||||| ||||||||||| ||||||
Sbjct: 25334182 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 25334225



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>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0616D06
          Length = 153800

 Score =  153 bits (77), Expect = 5e-34
 Identities = 161/189 (85%)
 Strand = Plus / Plus

                                                                          
Query: 1      cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60
              ||||| ||||| || ||||| ||  |||||||||| || ||||| | |||||| ||||||
Sbjct: 150481 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 150540

                                                                          
Query: 61     cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120
              ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| ||||||
Sbjct: 150541 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 150600

                                                                          
Query: 121    ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180
              ||||  ||||||||| || ||||| | |||||||||||||||  ||||||||| ||||| 
Sbjct: 150601 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 150660

                       
Query: 181    attgaagag 189
              |||||||||
Sbjct: 150661 attgaagag 150669



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 340    aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383
              ||||||||| | ||||||||||||| ||||||||||| ||||||
Sbjct: 150853 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 150896



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>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1056G08
          Length = 168173

 Score =  153 bits (77), Expect = 5e-34
 Identities = 161/189 (85%)
 Strand = Plus / Plus

                                                                         
Query: 1     cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60
             ||||| ||||| || ||||| ||  |||||||||| || ||||| | |||||| ||||||
Sbjct: 26900 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 26959

                                                                         
Query: 61    cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120
             ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| ||||||
Sbjct: 26960 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 27019

                                                                         
Query: 121   ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180
             ||||  ||||||||| || ||||| | |||||||||||||||  ||||||||| ||||| 
Sbjct: 27020 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 27079

                      
Query: 181   attgaagag 189
             |||||||||
Sbjct: 27080 attgaagag 27088



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 340   aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383
             ||||||||| | ||||||||||||| ||||||||||| ||||||
Sbjct: 27272 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 27315



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>dbj|AK120310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055F14, full
            insert sequence
          Length = 4836

 Score =  153 bits (77), Expect = 5e-34
 Identities = 161/189 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1    cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60
            ||||| ||||| || ||||| ||  |||||||||| || ||||| | |||||| ||||||
Sbjct: 3107 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 3166

                                                                        
Query: 61   cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120
            ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| ||||||
Sbjct: 3167 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 3226

                                                                        
Query: 121  ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180
            ||||  ||||||||| || ||||| | |||||||||||||||  ||||||||| ||||| 
Sbjct: 3227 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 3286

                     
Query: 181  attgaagag 189
            |||||||||
Sbjct: 3287 attgaagag 3295



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 340  aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383
            ||||||||| | ||||||||||||| ||||||||||| ||||||
Sbjct: 3479 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 3522



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>dbj|AK109921.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G01, full
           insert sequence
          Length = 1352

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 340 aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383
           ||||||||| | ||||||||||||| ||||||||||| ||||||
Sbjct: 86  aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 129



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>gb|AC182019.3| Felis catus clone RP86-75P21, complete sequence
          Length = 58123

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 91    ttcagaaaggaaaatacaaagcc 113
             |||||||||||||||||||||||
Sbjct: 46575 ttcagaaaggaaaatacaaagcc 46553



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>emb|CR749179.8| Zebrafish DNA sequence from clone DKEY-33A13 in linkage group 11,
             complete sequence
          Length = 90503

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 8     caagaactgtaagatccagttatgca 33
             |||||||| |||||||||||||||||
Sbjct: 35903 caagaactataagatccagttatgca 35878



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>emb|AL928964.7| Zebrafish DNA sequence from clone CH211-127I19, complete sequence
          Length = 168321

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 8      caagaactgtaagatccagttatgca 33
              |||||||| |||||||||||||||||
Sbjct: 147648 caagaactataagatccagttatgca 147673



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>emb|AL359172.19| Human DNA sequence from clone RP11-147A14 on chromosome 10 Contains the
             3' end of a novel gene (FLJ40283), complete sequence
          Length = 27919

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 83    tctccgacttcagaaaggaaaatacaaag 111
             ||||| |||||||| ||||||||||||||
Sbjct: 23700 tctccaacttcagataggaaaatacaaag 23728



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>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 225777

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 272    cttcatcagtgaactacaact 292
              |||||||||||||||||||||
Sbjct: 221820 cttcatcagtgaactacaact 221840



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>emb|AL354872.9| Human DNA sequence from clone RP11-42O15 on chromosome 1 Contains the
             CTH gene for cystathionase (cystathionine gamma-lyase) and
             a cysteine and histidine-rich domain (CHORD)-containing
             zinc binding protein 1 (CHORDC1) pseudogene, complete
             sequence
          Length = 151777

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 282   gaactacaactgggctccctcagga 306
             |||||| ||||||||||||||||||
Sbjct: 92762 gaactaaaactgggctccctcagga 92738



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>gb|AC158331.1| Homo sapiens chromosome 15 clone WI2-3304F23, complete sequence
          Length = 39043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 282   gaactacaactgggctccctcagga 306
             |||||| ||||||||||||||||||
Sbjct: 31600 gaactaaaactgggctccctcagga 31576



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>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 89    acttcagaaaggaaaatacaaagcc 113
             |||||||||||||||||| ||||||
Sbjct: 24540 acttcagaaaggaaaatataaagcc 24516



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>emb|CR376850.6| Zebrafish DNA sequence from clone DKEY-246K9 in linkage group 20,
             complete sequence
          Length = 243887

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   tattttgaatcaagaccaatc 218
             |||||||||||||||||||||
Sbjct: 87294 tattttgaatcaagaccaatc 87274



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>emb|AL832195.1|HSM803502 Homo sapiens mRNA; cDNA DKFZp686C072 (from clone DKFZp686C072)
          Length = 6542

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 83   tctccgacttcagaaaggaaaatacaaag 111
            ||||| |||||||| ||||||||||||||
Sbjct: 1903 tctccaacttcagataggaaaatacaaag 1875



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>gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, complete sequence
          Length = 213116

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     ttctccgacttcagaaagga 101
              ||||||||||||||||||||
Sbjct: 174482 ttctccgacttcagaaagga 174463



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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     aaatacaaagccatcagctg 121
               ||||||||||||||||||||
Sbjct: 1462163 aaatacaaagccatcagctg 1462182



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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 46      ccaccagaaaatcctcttgc 65
               ||||||||||||||||||||
Sbjct: 1019578 ccaccagaaaatcctcttgc 1019559



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>gb|AC112274.4| Mus musculus BAC clone RP24-125F23 from chromosome 10, complete
             sequence
          Length = 144435

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tgaagagtcaaagagtattt 202
             ||||||||||||||||||||
Sbjct: 38698 tgaagagtcaaagagtattt 38717



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>gb|AC121984.3| Mus musculus BAC clone RP24-292L23 from chromosome 3, complete sequence
          Length = 145348

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    ttttgttaggaaaggcaatg 364
              ||||||||||||||||||||
Sbjct: 135338 ttttgttaggaaaggcaatg 135319



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>gb|AC124218.17| Medicago truncatula clone mth2-30b20, complete sequence
          Length = 120761

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   taaaagcataattgaagagt 190
             ||||||||||||||||||||
Sbjct: 59326 taaaagcataattgaagagt 59307



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>gb|BC091010.1| Xenopus tropicalis MGC107814 protein, mRNA (cDNA clone MGC:107814
           IMAGE:7021397), complete cds
          Length = 2491

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 103 aatacaaagccatcagctggtcat 126
           ||||||||||||||||||| ||||
Sbjct: 62  aatacaaagccatcagctgctcat 85



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>gb|AE014235.1| Streptococcus agalactiae 2603V/R section 45 of 100 of the complete
             genome
          Length = 20172

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    ccaccagaaaatcctcttgc 65
             ||||||||||||||||||||
Sbjct: 11176 ccaccagaaaatcctcttgc 11157



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>ref|NM_001030403.1| Xenopus tropicalis MGC107814 protein (MGC107814), mRNA
          Length = 2491

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 103 aatacaaagccatcagctggtcat 126
           ||||||||||||||||||| ||||
Sbjct: 62  aatacaaagccatcagctgctcat 85



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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    ccaccagaaaatcctcttgc 65
             ||||||||||||||||||||
Sbjct: 33030 ccaccagaaaatcctcttgc 33011



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>emb|CR735112.10| Zebrafish DNA sequence from clone CH211-222C11 in linkage group 5,
              complete sequence
          Length = 156543

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    tattttgaatcaagaccaat 217
              ||||||||||||||||||||
Sbjct: 100501 tattttgaatcaagaccaat 100482



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>gb|AC092420.2| Homo sapiens chromosome 3 clone RP11-435M24, complete sequence
          Length = 183774

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    tccgacttcagaaaggaaaa 104
             ||||||||||||||||||||
Sbjct: 63345 tccgacttcagaaaggaaaa 63364



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>gb|AC018517.7| Homo sapiens, clone RP11-115N12, complete sequence
          Length = 180917

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tattttgaatcaagaccaat 217
             ||||||||||||||||||||
Sbjct: 18578 tattttgaatcaagaccaat 18559



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>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome
          Length = 1471282

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    agtttttcccgtagtaaaag 176
              ||||||||||||||||||||
Sbjct: 608470 agtttttcccgtagtaaaag 608489



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 83     tctccgacttcagaaaggaaaata 106
              |||||||||| |||||||||||||
Sbjct: 940860 tctccgactttagaaaggaaaata 940837



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>gb|AC007483.7|AC007483 Homo sapiens, clone RP11-72A1, complete sequence
          Length = 176174

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     tccgacttcagaaaggaaaa 104
              ||||||||||||||||||||
Sbjct: 137796 tccgacttcagaaaggaaaa 137815



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>gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 159240

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    tcctcttgcacagtcagttcccaa 80
             ||||||||||| ||||||||||||
Sbjct: 14550 tcctcttgcactgtcagttcccaa 14573



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>gb|AC009223.2| Homo sapiens BAC clone RP11-24K2 from 2, complete sequence
          Length = 182144

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     ttcagaaaggaaaatacaaa 110
              ||||||||||||||||||||
Sbjct: 157879 ttcagaaaggaaaatacaaa 157860



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>gb|AC018359.7|AC018359 Homo sapiens 3 BAC RP11-35C18 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 160307

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   tccgacttcagaaaggaaaa 104
            ||||||||||||||||||||
Sbjct: 3846 tccgacttcagaaaggaaaa 3865



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>ref|NM_211182.1| Eremothecium gossypii AFR280Wp (AFR280W), mRNA
          Length = 2493

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 83   tctccgacttcagaaaggaaaata 106
            |||||||||| |||||||||||||
Sbjct: 1937 tctccgactttagaaaggaaaata 1914



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>gb|AC145743.4| Mus musculus BAC clone RP24-171K11 from 3, complete sequence
          Length = 174136

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    ttttgttaggaaaggcaatg 364
              ||||||||||||||||||||
Sbjct: 149429 ttttgttaggaaaggcaatg 149410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,772,111
Number of Sequences: 3902068
Number of extensions: 3772111
Number of successful extensions: 70028
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69913
Number of HSP's gapped (non-prelim): 115
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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