| Clone Name | bags7d23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479164.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4101 Score = 153 bits (77), Expect = 5e-34 Identities = 161/189 (85%) Strand = Plus / Plus Query: 1 cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60 ||||| ||||| || ||||| || |||||||||| || ||||| | |||||| |||||| Sbjct: 2779 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 2838 Query: 61 cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120 ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| |||||| Sbjct: 2839 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 2898 Query: 121 ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180 |||| ||||||||| || ||||| | ||||||||||||||| ||||||||| ||||| Sbjct: 2899 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 2958 Query: 181 attgaagag 189 ||||||||| Sbjct: 2959 attgaagag 2967 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 340 aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383 ||||||||| | ||||||||||||| ||||||||||| |||||| Sbjct: 3151 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 3194
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 153 bits (77), Expect = 5e-34 Identities = 161/189 (85%) Strand = Plus / Plus Query: 1 cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60 ||||| ||||| || ||||| || |||||||||| || ||||| | |||||| |||||| Sbjct: 25333810 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 25333869 Query: 61 cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120 ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| |||||| Sbjct: 25333870 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 25333929 Query: 121 ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180 |||| ||||||||| || ||||| | ||||||||||||||| ||||||||| ||||| Sbjct: 25333930 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 25333989 Query: 181 attgaagag 189 ||||||||| Sbjct: 25333990 attgaagag 25333998 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 340 aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383 ||||||||| | ||||||||||||| ||||||||||| |||||| Sbjct: 25334182 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 25334225
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 153 bits (77), Expect = 5e-34 Identities = 161/189 (85%) Strand = Plus / Plus Query: 1 cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60 ||||| ||||| || ||||| || |||||||||| || ||||| | |||||| |||||| Sbjct: 150481 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 150540 Query: 61 cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120 ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| |||||| Sbjct: 150541 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 150600 Query: 121 ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180 |||| ||||||||| || ||||| | ||||||||||||||| ||||||||| ||||| Sbjct: 150601 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 150660 Query: 181 attgaagag 189 ||||||||| Sbjct: 150661 attgaagag 150669 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 340 aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383 ||||||||| | ||||||||||||| ||||||||||| |||||| Sbjct: 150853 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 150896
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 153 bits (77), Expect = 5e-34 Identities = 161/189 (85%) Strand = Plus / Plus Query: 1 cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60 ||||| ||||| || ||||| || |||||||||| || ||||| | |||||| |||||| Sbjct: 26900 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 26959 Query: 61 cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120 ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| |||||| Sbjct: 26960 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 27019 Query: 121 ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180 |||| ||||||||| || ||||| | ||||||||||||||| ||||||||| ||||| Sbjct: 27020 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 27079 Query: 181 attgaagag 189 ||||||||| Sbjct: 27080 attgaagag 27088 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 340 aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383 ||||||||| | ||||||||||||| ||||||||||| |||||| Sbjct: 27272 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 27315
>dbj|AK120310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055F14, full insert sequence Length = 4836 Score = 153 bits (77), Expect = 5e-34 Identities = 161/189 (85%) Strand = Plus / Plus Query: 1 cattcgtcaagaactgtaagatccagttatgcaaatcgcaggaacccaccagaaaatcct 60 ||||| ||||| || ||||| || |||||||||| || ||||| | |||||| |||||| Sbjct: 3107 cattcatcaaggaccgtaagctctggttatgcaaaccgtaggaatctaccagataatcct 3166 Query: 61 cttgcacagtcagttcccaatttctccgacttcagaaaggaaaatacaaagccatcagct 120 ||||||||||| || ||||||||| | ||||| ||||| |||||||||||||| |||||| Sbjct: 3167 cttgcacagtctgtccccaatttcgcggacttaagaaaagaaaatacaaagccctcagct 3226 Query: 121 ggtcatagcagagctactgcaagggctcagccaaaaagtttttcccgtagtaaaagcata 180 |||| ||||||||| || ||||| | ||||||||||||||| ||||||||| ||||| Sbjct: 3227 ggtctgagcagagctgctccaaggacccagccaaaaagttttatccgtagtaagagcatc 3286 Query: 181 attgaagag 189 ||||||||| Sbjct: 3287 attgaagag 3295 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 340 aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383 ||||||||| | ||||||||||||| ||||||||||| |||||| Sbjct: 3479 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 3522
>dbj|AK109921.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G01, full insert sequence Length = 1352 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 340 aagtcttttgttaggaaaggcaatggggctcaccctgttgtcgg 383 ||||||||| | ||||||||||||| ||||||||||| |||||| Sbjct: 86 aagtcttttctcaggaaaggcaatgaggctcaccctgctgtcgg 129
>gb|AC182019.3| Felis catus clone RP86-75P21, complete sequence Length = 58123 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Minus Query: 91 ttcagaaaggaaaatacaaagcc 113 ||||||||||||||||||||||| Sbjct: 46575 ttcagaaaggaaaatacaaagcc 46553
>emb|CR749179.8| Zebrafish DNA sequence from clone DKEY-33A13 in linkage group 11, complete sequence Length = 90503 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 caagaactgtaagatccagttatgca 33 |||||||| ||||||||||||||||| Sbjct: 35903 caagaactataagatccagttatgca 35878
>emb|AL928964.7| Zebrafish DNA sequence from clone CH211-127I19, complete sequence Length = 168321 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 8 caagaactgtaagatccagttatgca 33 |||||||| ||||||||||||||||| Sbjct: 147648 caagaactataagatccagttatgca 147673
>emb|AL359172.19| Human DNA sequence from clone RP11-147A14 on chromosome 10 Contains the 3' end of a novel gene (FLJ40283), complete sequence Length = 27919 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 83 tctccgacttcagaaaggaaaatacaaag 111 ||||| |||||||| |||||||||||||| Sbjct: 23700 tctccaacttcagataggaaaatacaaag 23728
>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research Institute) complete sequence Length = 225777 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 cttcatcagtgaactacaact 292 ||||||||||||||||||||| Sbjct: 221820 cttcatcagtgaactacaact 221840
>emb|AL354872.9| Human DNA sequence from clone RP11-42O15 on chromosome 1 Contains the CTH gene for cystathionase (cystathionine gamma-lyase) and a cysteine and histidine-rich domain (CHORD)-containing zinc binding protein 1 (CHORDC1) pseudogene, complete sequence Length = 151777 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 282 gaactacaactgggctccctcagga 306 |||||| |||||||||||||||||| Sbjct: 92762 gaactaaaactgggctccctcagga 92738
>gb|AC158331.1| Homo sapiens chromosome 15 clone WI2-3304F23, complete sequence Length = 39043 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 282 gaactacaactgggctccctcagga 306 |||||| |||||||||||||||||| Sbjct: 31600 gaactaaaactgggctccctcagga 31576
>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence Length = 158596 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 89 acttcagaaaggaaaatacaaagcc 113 |||||||||||||||||| |||||| Sbjct: 24540 acttcagaaaggaaaatataaagcc 24516
>emb|CR376850.6| Zebrafish DNA sequence from clone DKEY-246K9 in linkage group 20, complete sequence Length = 243887 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 tattttgaatcaagaccaatc 218 ||||||||||||||||||||| Sbjct: 87294 tattttgaatcaagaccaatc 87274
>emb|AL832195.1|HSM803502 Homo sapiens mRNA; cDNA DKFZp686C072 (from clone DKFZp686C072) Length = 6542 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 83 tctccgacttcagaaaggaaaatacaaag 111 ||||| |||||||| |||||||||||||| Sbjct: 1903 tctccaacttcagataggaaaatacaaag 1875
>gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, complete sequence Length = 213116 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ttctccgacttcagaaagga 101 |||||||||||||||||||| Sbjct: 174482 ttctccgacttcagaaagga 174463
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aaatacaaagccatcagctg 121 |||||||||||||||||||| Sbjct: 1462163 aaatacaaagccatcagctg 1462182
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ccaccagaaaatcctcttgc 65 |||||||||||||||||||| Sbjct: 1019578 ccaccagaaaatcctcttgc 1019559
>gb|AC112274.4| Mus musculus BAC clone RP24-125F23 from chromosome 10, complete sequence Length = 144435 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tgaagagtcaaagagtattt 202 |||||||||||||||||||| Sbjct: 38698 tgaagagtcaaagagtattt 38717
>gb|AC121984.3| Mus musculus BAC clone RP24-292L23 from chromosome 3, complete sequence Length = 145348 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ttttgttaggaaaggcaatg 364 |||||||||||||||||||| Sbjct: 135338 ttttgttaggaaaggcaatg 135319
>gb|AC124218.17| Medicago truncatula clone mth2-30b20, complete sequence Length = 120761 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 taaaagcataattgaagagt 190 |||||||||||||||||||| Sbjct: 59326 taaaagcataattgaagagt 59307
>gb|BC091010.1| Xenopus tropicalis MGC107814 protein, mRNA (cDNA clone MGC:107814 IMAGE:7021397), complete cds Length = 2491 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 aatacaaagccatcagctggtcat 126 ||||||||||||||||||| |||| Sbjct: 62 aatacaaagccatcagctgctcat 85
>gb|AE014235.1| Streptococcus agalactiae 2603V/R section 45 of 100 of the complete genome Length = 20172 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ccaccagaaaatcctcttgc 65 |||||||||||||||||||| Sbjct: 11176 ccaccagaaaatcctcttgc 11157
>ref|NM_001030403.1| Xenopus tropicalis MGC107814 protein (MGC107814), mRNA Length = 2491 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 aatacaaagccatcagctggtcat 126 ||||||||||||||||||| |||| Sbjct: 62 aatacaaagccatcagctgctcat 85
>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6 Length = 233050 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ccaccagaaaatcctcttgc 65 |||||||||||||||||||| Sbjct: 33030 ccaccagaaaatcctcttgc 33011
>emb|CR735112.10| Zebrafish DNA sequence from clone CH211-222C11 in linkage group 5, complete sequence Length = 156543 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tattttgaatcaagaccaat 217 |||||||||||||||||||| Sbjct: 100501 tattttgaatcaagaccaat 100482
>gb|AC092420.2| Homo sapiens chromosome 3 clone RP11-435M24, complete sequence Length = 183774 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccgacttcagaaaggaaaa 104 |||||||||||||||||||| Sbjct: 63345 tccgacttcagaaaggaaaa 63364
>gb|AC018517.7| Homo sapiens, clone RP11-115N12, complete sequence Length = 180917 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tattttgaatcaagaccaat 217 |||||||||||||||||||| Sbjct: 18578 tattttgaatcaagaccaat 18559
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 agtttttcccgtagtaaaag 176 |||||||||||||||||||| Sbjct: 608470 agtttttcccgtagtaaaag 608489
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 tctccgacttcagaaaggaaaata 106 |||||||||| ||||||||||||| Sbjct: 940860 tctccgactttagaaaggaaaata 940837
>gb|AC007483.7|AC007483 Homo sapiens, clone RP11-72A1, complete sequence Length = 176174 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccgacttcagaaaggaaaa 104 |||||||||||||||||||| Sbjct: 137796 tccgacttcagaaaggaaaa 137815
>gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159240 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 tcctcttgcacagtcagttcccaa 80 ||||||||||| |||||||||||| Sbjct: 14550 tcctcttgcactgtcagttcccaa 14573
>gb|AC009223.2| Homo sapiens BAC clone RP11-24K2 from 2, complete sequence Length = 182144 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttcagaaaggaaaatacaaa 110 |||||||||||||||||||| Sbjct: 157879 ttcagaaaggaaaatacaaa 157860
>gb|AC018359.7|AC018359 Homo sapiens 3 BAC RP11-35C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160307 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccgacttcagaaaggaaaa 104 |||||||||||||||||||| Sbjct: 3846 tccgacttcagaaaggaaaa 3865
>ref|NM_211182.1| Eremothecium gossypii AFR280Wp (AFR280W), mRNA Length = 2493 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 tctccgacttcagaaaggaaaata 106 |||||||||| ||||||||||||| Sbjct: 1937 tctccgactttagaaaggaaaata 1914
>gb|AC145743.4| Mus musculus BAC clone RP24-171K11 from 3, complete sequence Length = 174136 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ttttgttaggaaaggcaatg 364 |||||||||||||||||||| Sbjct: 149429 ttttgttaggaaaggcaatg 149410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,772,111 Number of Sequences: 3902068 Number of extensions: 3772111 Number of successful extensions: 70028 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69913 Number of HSP's gapped (non-prelim): 115 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)