Clone Information

BLAST Search Result

Clone Name	bags7d22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_191185.1\| Oryza sativa (japonica cultivar-group), predic...	593	e-166
2	dbj\|AK066787.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	593	e-166
3	dbj\|AK072636.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	585	e-164
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	240	4e-60
5	dbj\|AP003376.3\| Oryza sativa (japonica cultivar-group) genomic D...	240	4e-60
6	gb\|BT017544.1\| Zea mays clone EL01N0422G11.c mRNA sequence	184	2e-43
7	ref\|XM_763431.1\| Giardia lamblia ATCC 50803 protease (GLP_0_3769...	44	0.54
8	emb\|BX897700.1\| Bartonella quintana str. Toulouse, complete genome	44	0.54
9	gb\|AC174471.2\| Mus musculus BAC clone RP23-360P3 from chromosome...	44	0.54
10	gb\|CP000352.1\| Ralstonia metallidurans CH34, complete genome	42	2.1
11	emb\|AL731538.4\| Human DNA sequence from clone RP11-457G5 on chro...	42	2.1
12	emb\|AL357522.10\| Human DNA sequence from clone RP11-685G11 on ch...	42	2.1
13	emb\|BX276103.13\| Zebrafish DNA sequence from clone DKEY-7B17, co...	42	2.1
14	emb\|BX005059.4\| Zebrafish DNA sequence from clone CH211-138A6, c...	42	2.1
15	ref\|NM_129397.2\| Arabidopsis thaliana protein transporter AT2G38...	40	8.4
16	ref\|XM_468173.1\| Oryza sativa (japonica cultivar-group), mRNA	40	8.4
17	gb\|AC069324.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
18	ref\|XM_849148.1\| PREDICTED: Canis familiaris similar to LINE-1 r...	40	8.4
19	gb\|AC132148.3\| Mus musculus BAC clone RP23-6N21 from chromosome ...	40	8.4
20	gb\|AC124169.3\| Mus musculus BAC clone RP23-151G15 from 19, compl...	40	8.4
21	ref\|XM_646864.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	8.4
22	gb\|AC146789.30\| Medicago truncatula clone mth2-71h24, complete s...	40	8.4
23	emb\|Z83840.7\|HS216E10 Human DNA sequence from clone CTA-216E10 o...	40	8.4
24	gb\|AC145127.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
25	gb\|AC155228.11\| Medicago truncatula clone mth2-139i19, complete ...	40	8.4
26	gb\|AC079262.28\| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Ca...	40	8.4
27	gb\|AC004683.3\| Arabidopsis thaliana chromosome 2 clone T19C21 ma...	40	8.4
28	gb\|AC079317.25\| Homo sapiens 12 BAC RP11-4K23 (Roswell Park Canc...	40	8.4
29	emb\|BX548163.15\| Zebrafish DNA sequence from clone CH211-135J7 i...	40	8.4
30	gb\|AF215560.1\|AF215560 Pternandra multiflora NADH dehydrogenase ...	40	8.4
31	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
32	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
33	gb\|AC151269.3\| Mus musculus BAC clone RP24-271C20 from chromosom...	40	8.4
34	gb\|AC127464.3\| Ornithorhynchus anatinus clone OA_Bb-383O11, comp...	40	8.4
35	dbj\|AP005535.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
36	dbj\|AP004057.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
37	dbj\|AK120525.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
38	dbj\|AK072615.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
39	emb\|CR753900.9\| Zebrafish DNA sequence from clone CH211-167B13 i...	40	8.4
40	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
41	emb\|CT030727.4\| Mouse DNA sequence from clone RP23-273I12 on chr...	40	8.4
42	gb\|AC002563.1\|AC002563 Human PAC clone 127H14 from 12q, complete...	40	8.4
43	dbj\|AB047397.2\| Zygosaccharomyces rouxii ZGCY2 mRNA for glycerol...	40	8.4
44	dbj\|AB047396.1\| Zygosaccharomyces rouxii ZGCY1 gene for glycerol...	40	8.4

>ref|NM_191185.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2202

 Score =  593 bits (299), Expect = e-166
 Identities = 525/603 (87%)
 Strand = Plus / Plus

                                                                        
Query: 10   gttgattggttagctgattacgacagnctcttgaccaagacggatggcacggtgtattgc 69
            |||||||||||||| || || ||||| |||||||||||||| ||   |||| | ||| ||
Sbjct: 628  gttgattggttagccgactatgacagcctcttgaccaagacagagaacacgatatatcgc 687

                                                                        
Query: 70   aagctcaataatttccnnnnnnngctaatcaacctgcagattgttgaaaatgatgatgat 129
            | ||| |  |||||||       ||| |||||||||||| |||||||| |||||  ||||
Sbjct: 688  acgctgatcaatttccagaaaaagctcatcaacctgcaggttgttgaagatgatcctgat 747

                                                                        
Query: 130  tactggaatggattatcggcagcactgtcagttggatggcttgatgtcgtggtgaatatg 189
            || |||| ||||||||| ||||| || || ||||||||||||||| | ||||||||||||
Sbjct: 748  tattggagtggattatcagcagctctatcggttggatggcttgatattgtggtgaatatg 807

                                                                        
Query: 190  ctacgttttcatggatcataccaattggatcagatggacaaccgtgagacagaaaacggg 249
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 808  ctacgttttcatggatcataccaattggatcagatggacagccgtgagacagaaaatggg 867

                                                                        
Query: 250  ttggttgaggctgttgcagttcttgtctcaaccatgccgcgcatgagaccggatttacca 309
            |||||||| |||||||| |||||||| ||||| ||||| |||||| |||| ||||| |||
Sbjct: 868  ttggttgaagctgttgctgttcttgtgtcaacaatgccacgcatgcgaccagatttgcca 927

                                                                        
Query: 310  aagggtaaattaggccagtgctgtaaaacaagacctgatttcatcaagacatgggaaaaa 369
              |||||||||||||||||| |||||||||||||| ||||| || ||| ||| |||||||
Sbjct: 928  tcgggtaaattaggccagtgttgtaaaacaagaccagattttataaaggcattggaaaaa 987

                                                                        
Query: 370  tggcgaggtcaagtaagtaaactggagtgcagtgcattttggattcagtgcagtcaccaa 429
            |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 988  tggcgaggtcaagtaagtaaactggagtgcagtgcattctggattcagtgcggtcaccaa 1047

                                                                        
Query: 430  aaaactcgtgatggtttgaagaatctgcttcacatcatgttgggaaatataaaggacctc 489
            ||||||||||||||| |||||| | ||||||| || |||||||| || |||||| |||||
Sbjct: 1048 aaaactcgtgatggtctgaagagtttgcttcatattatgttggggaacataaagaacctc 1107

                                                                        
Query: 490  actgctgctacttcccattggctggaactattcgcttctcattttctttatataagacca 549
            |||||| ||||||| ||||||||||| || || ||||||||||| ||||||||||| |||
Sbjct: 1108 actgcttctacttcacattggctggagctctttgcttctcatttactttatataaggcca 1167

                                                                        
Query: 550  tttacggtgggctttgaagggatgcatcacttagcacagaaatgcatacaacttaagccg 609
            || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||| |||
Sbjct: 1168 ttcacagtgggttttgaagggatgcatcagttagcacaaaagtgcatacagcttaaaccg 1227

               
Query: 610  tct 612
            |||
Sbjct: 1228 tct 1230

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>dbj|AK066787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G22, full
            insert sequence
          Length = 2482

 Score =  593 bits (299), Expect = e-166
 Identities = 525/603 (87%)
 Strand = Plus / Plus

                                                                        
Query: 10   gttgattggttagctgattacgacagnctcttgaccaagacggatggcacggtgtattgc 69
            |||||||||||||| || || ||||| |||||||||||||| ||   |||| | ||| ||
Sbjct: 570  gttgattggttagccgactatgacagcctcttgaccaagacagagaacacgatatatcgc 629

                                                                        
Query: 70   aagctcaataatttccnnnnnnngctaatcaacctgcagattgttgaaaatgatgatgat 129
            | ||| |  |||||||       ||| |||||||||||| |||||||| |||||  ||||
Sbjct: 630  acgctgatcaatttccagaaaaagctcatcaacctgcaggttgttgaagatgatcctgat 689

                                                                        
Query: 130  tactggaatggattatcggcagcactgtcagttggatggcttgatgtcgtggtgaatatg 189
            || |||| ||||||||| ||||| || || ||||||||||||||| | ||||||||||||
Sbjct: 690  tattggagtggattatcagcagctctatcggttggatggcttgatattgtggtgaatatg 749

                                                                        
Query: 190  ctacgttttcatggatcataccaattggatcagatggacaaccgtgagacagaaaacggg 249
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 750  ctacgttttcatggatcataccaattggatcagatggacagccgtgagacagaaaatggg 809

                                                                        
Query: 250  ttggttgaggctgttgcagttcttgtctcaaccatgccgcgcatgagaccggatttacca 309
            |||||||| |||||||| |||||||| ||||| ||||| |||||| |||| ||||| |||
Sbjct: 810  ttggttgaagctgttgctgttcttgtgtcaacaatgccacgcatgcgaccagatttgcca 869

                                                                        
Query: 310  aagggtaaattaggccagtgctgtaaaacaagacctgatttcatcaagacatgggaaaaa 369
              |||||||||||||||||| |||||||||||||| ||||| || ||| ||| |||||||
Sbjct: 870  tcgggtaaattaggccagtgttgtaaaacaagaccagattttataaaggcattggaaaaa 929

                                                                        
Query: 370  tggcgaggtcaagtaagtaaactggagtgcagtgcattttggattcagtgcagtcaccaa 429
            |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 930  tggcgaggtcaagtaagtaaactggagtgcagtgcattctggattcagtgcggtcaccaa 989

                                                                        
Query: 430  aaaactcgtgatggtttgaagaatctgcttcacatcatgttgggaaatataaaggacctc 489
            ||||||||||||||| |||||| | ||||||| || |||||||| || |||||| |||||
Sbjct: 990  aaaactcgtgatggtctgaagagtttgcttcatattatgttggggaacataaagaacctc 1049

                                                                        
Query: 490  actgctgctacttcccattggctggaactattcgcttctcattttctttatataagacca 549
            |||||| ||||||| ||||||||||| || || ||||||||||| ||||||||||| |||
Sbjct: 1050 actgcttctacttcacattggctggagctctttgcttctcatttactttatataaggcca 1109

                                                                        
Query: 550  tttacggtgggctttgaagggatgcatcacttagcacagaaatgcatacaacttaagccg 609
            || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||| |||
Sbjct: 1110 ttcacagtgggttttgaagggatgcatcagttagcacaaaagtgcatacagcttaaaccg 1169

               
Query: 610  tct 612
            |||
Sbjct: 1170 tct 1172

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>dbj|AK072636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133F04, full
            insert sequence
          Length = 2628

 Score =  585 bits (295), Expect = e-164
 Identities = 524/603 (86%)
 Strand = Plus / Plus

                                                                        
Query: 10   gttgattggttagctgattacgacagnctcttgaccaagacggatggcacggtgtattgc 69
            |||||||||||||| || || ||||| |||||||||||||| ||   |||| | ||| ||
Sbjct: 754  gttgattggttagccgactatgacagcctcttgaccaagacagagaacacgatatatcgc 813

                                                                        
Query: 70   aagctcaataatttccnnnnnnngctaatcaacctgcagattgttgaaaatgatgatgat 129
            | ||| |  |||||||       ||| |||||||||||| |||||||| |||||  ||||
Sbjct: 814  acgctgatcaatttccagaaaaagctcatcaacctgcaggttgttgaagatgatcctgat 873

                                                                        
Query: 130  tactggaatggattatcggcagcactgtcagttggatggcttgatgtcgtggtgaatatg 189
            || |||| ||||||||| ||||| || || ||||||||||||||| | ||||||||||||
Sbjct: 874  tattggagtggattatcagcagctctatcggttggatggcttgatattgtggtgaatatg 933

                                                                        
Query: 190  ctacgttttcatggatcataccaattggatcagatggacaaccgtgagacagaaaacggg 249
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 934  ctacgttttcatggatcataccaattggatcagatggacagccgtgagacagaaaatggg 993

                                                                        
Query: 250  ttggttgaggctgttgcagttcttgtctcaaccatgccgcgcatgagaccggatttacca 309
            |||||||| |||||||| |||||||| ||||| ||||| |||||| |||| ||||| |||
Sbjct: 994  ttggttgaagctgttgctgttcttgtgtcaacaatgccacgcatgcgaccagatttgcca 1053

                                                                        
Query: 310  aagggtaaattaggccagtgctgtaaaacaagacctgatttcatcaagacatgggaaaaa 369
              |||||||||||||||||| |||||||||||||| ||||| || ||| ||| |||||||
Sbjct: 1054 tcgggtaaattaggccagtgttgtaaaacaagaccagattttataaaggcattggaaaaa 1113

                                                                        
Query: 370  tggcgaggtcaagtaagtaaactggagtgcagtgcattttggattcagtgcagtcaccaa 429
            |||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 1114 tggcgaggtcgagtaagtaaactggagtgcagtgcattctggattcagtgcggtcaccaa 1173

                                                                        
Query: 430  aaaactcgtgatggtttgaagaatctgcttcacatcatgttgggaaatataaaggacctc 489
            ||||||||||||||| |||||| | ||||||| || |||||||| || |||||| |||||
Sbjct: 1174 aaaactcgtgatggtctgaagagtttgcttcatattatgttggggaacataaagaacctc 1233

                                                                        
Query: 490  actgctgctacttcccattggctggaactattcgcttctcattttctttatataagacca 549
            |||||| ||||||| ||||||||||| || || ||||||||||| ||||||||||| |||
Sbjct: 1234 actgcttctacttcacattggctggagctctttgcttctcatttactttatataaggcca 1293

                                                                        
Query: 550  tttacggtgggctttgaagggatgcatcacttagcacagaaatgcatacaacttaagccg 609
            || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||| |||
Sbjct: 1294 ttcacagtgggttttgaagggatgcatcagttagcacaaaagtgcatacagcttaaaccg 1353

               
Query: 610  tct 612
            |||
Sbjct: 1354 tct 1356

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  240 bits (121), Expect = 4e-60
 Identities = 172/189 (91%)
 Strand = Plus / Plus

                                                                            
Query: 363      ggaaaaatggcgaggtcaagtaagtaaactggagtgcagtgcattttggattcagtgcag 422
                ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 31201306 ggaaaaatggcgaggtcaagtaagtaaactggagtgcagtgcattctggattcagtgcgg 31201365

                                                                            
Query: 423      tcaccaaaaaactcgtgatggtttgaagaatctgcttcacatcatgttgggaaatataaa 482
                |||||||||||||||||||||| |||||| | ||||||| || |||||||| || |||||
Sbjct: 31201366 tcaccaaaaaactcgtgatggtctgaagagtttgcttcatattatgttggggaacataaa 31201425

                                                                            
Query: 483      ggacctcactgctgctacttcccattggctggaactattcgcttctcattttctttatat 542
                | ||||||||||| ||||||| ||||||||||| || || ||||||||||| ||||||||
Sbjct: 31201426 gaacctcactgcttctacttcacattggctggagctctttgcttctcatttactttatat 31201485

                         
Query: 543      aagaccatt 551
                ||| |||||
Sbjct: 31201486 aaggccatt 31201494



 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                            
Query: 236      agacagaaaacgggttggttgaggctgttgcagttcttgtctcaaccatgccgcgcatga 295
                |||||||||| ||||||||||| |||||||| |||||||| ||||| ||||| |||||| 
Sbjct: 31200425 agacagaaaatgggttggttgaagctgttgctgttcttgtgtcaacaatgccacgcatgc 31200484

                                                                       
Query: 296      gaccggatttaccaaagggtaaattaggccagtgctgtaaaacaagacctgattt 350
                |||| ||||| |||  |||||||||||||||||| |||||||||||||| |||||
Sbjct: 31200485 gaccagatttgccatcgggtaaattaggccagtgttgtaaaacaagaccagattt 31200539



 Score =  107 bits (54), Expect = 4e-20
 Identities = 57/58 (98%)
 Strand = Plus / Plus

                                                                          
Query: 180      ggtgaatatgctacgttttcatggatcataccaattggatcagatggacaaccgtgag 237
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 31200072 ggtgaatatgctacgttttcatggatcataccaattggatcagatggacagccgtgag 31200129



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 562      tttgaagggatgcatcacttagcacagaaatgcatacaacttaagccgtct 612
                ||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 31201956 tttgaagggatgcatcagttagcacaaaagtgcatacagcttaaaccgtct 31202006



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 110      ttgttgaaaatgatgatgattactggaatggattatcggcagcactgtcagttggatggc 169
                |||||||| |||||  |||||| |||| ||||||||| ||||| || || ||||||||||
Sbjct: 31199916 ttgttgaagatgatcctgattattggagtggattatcagcagctctatcggttggatggc 31199975

                     
Query: 170      ttgat 174
                |||||
Sbjct: 31199976 ttgat 31199980

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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0014K08
          Length = 177263

 Score =  240 bits (121), Expect = 4e-60
 Identities = 172/189 (91%)
 Strand = Plus / Plus

                                                                          
Query: 363    ggaaaaatggcgaggtcaagtaagtaaactggagtgcagtgcattttggattcagtgcag 422
              ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 127651 ggaaaaatggcgaggtcaagtaagtaaactggagtgcagtgcattctggattcagtgcgg 127710

                                                                          
Query: 423    tcaccaaaaaactcgtgatggtttgaagaatctgcttcacatcatgttgggaaatataaa 482
              |||||||||||||||||||||| |||||| | ||||||| || |||||||| || |||||
Sbjct: 127711 tcaccaaaaaactcgtgatggtctgaagagtttgcttcatattatgttggggaacataaa 127770

                                                                          
Query: 483    ggacctcactgctgctacttcccattggctggaactattcgcttctcattttctttatat 542
              | ||||||||||| ||||||| ||||||||||| || || ||||||||||| ||||||||
Sbjct: 127771 gaacctcactgcttctacttcacattggctggagctctttgcttctcatttactttatat 127830

                       
Query: 543    aagaccatt 551
              ||| |||||
Sbjct: 127831 aaggccatt 127839



 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                          
Query: 236    agacagaaaacgggttggttgaggctgttgcagttcttgtctcaaccatgccgcgcatga 295
              |||||||||| ||||||||||| |||||||| |||||||| ||||| ||||| |||||| 
Sbjct: 126770 agacagaaaatgggttggttgaagctgttgctgttcttgtgtcaacaatgccacgcatgc 126829

                                                                     
Query: 296    gaccggatttaccaaagggtaaattaggccagtgctgtaaaacaagacctgattt 350
              |||| ||||| |||  |||||||||||||||||| |||||||||||||| |||||
Sbjct: 126830 gaccagatttgccatcgggtaaattaggccagtgttgtaaaacaagaccagattt 126884



 Score =  107 bits (54), Expect = 4e-20
 Identities = 57/58 (98%)
 Strand = Plus / Plus

                                                                        
Query: 180    ggtgaatatgctacgttttcatggatcataccaattggatcagatggacaaccgtgag 237
              |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 126417 ggtgaatatgctacgttttcatggatcataccaattggatcagatggacagccgtgag 126474



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                 
Query: 562    tttgaagggatgcatcacttagcacagaaatgcatacaacttaagccgtct 612
              ||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 128301 tttgaagggatgcatcagttagcacaaaagtgcatacagcttaaaccgtct 128351



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 110    ttgttgaaaatgatgatgattactggaatggattatcggcagcactgtcagttggatggc 169
              |||||||| |||||  |||||| |||| ||||||||| ||||| || || ||||||||||
Sbjct: 126261 ttgttgaagatgatcctgattattggagtggattatcagcagctctatcggttggatggc 126320

                   
Query: 170    ttgat 174
              |||||
Sbjct: 126321 ttgat 126325

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>gb|BT017544.1| Zea mays clone EL01N0422G11.c mRNA sequence
          Length = 1370

 Score =  184 bits (93), Expect = 2e-43
 Identities = 156/177 (88%)
 Strand = Plus / Plus

                                                                       
Query: 428 aaaaaactcgtgatggtttgaagaatctgcttcacatcatgttgggaaatataaaggacc 487
           |||||||||||||||||||||||||| ||||||| || ||| |||| || ||||||||  
Sbjct: 9   aaaaaactcgtgatggtttgaagaatttgcttcatattatgatggggaacataaaggaaa 68

                                                                       
Query: 488 tcactgctgctacttcccattggctggaactattcgcttctcattttctttatataagac 547
           | |||||||||||||||||||||||||| || || ||||||||||||||||| |||| ||
Sbjct: 69  ttactgctgctacttcccattggctggagctgtttgcttctcattttctttacataaaac 128

                                                                    
Query: 548 catttacggtgggctttgaagggatgcatcacttagcacagaaatgcatacaactta 604
           ||||||| ||||| |||||||||||||| || ||||||||||| || ||||| ||||
Sbjct: 129 catttacagtgggttttgaagggatgcaccatttagcacagaagtggatacagctta 185

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>ref|XM_763431.1| Giardia lamblia ATCC 50803 protease (GLP_0_37691_39238) partial
           mRNA
          Length = 1548

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 113 ttgaaaatgatgatgattactg 134
           ||||||||||||||||||||||
Sbjct: 416 ttgaaaatgatgatgattactg 437

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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 109     attgttgaaaatgatgatgatt 130
               ||||||||||||||||||||||
Sbjct: 1520277 attgttgaaaatgatgatgatt 1520298

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>gb|AC174471.2| Mus musculus BAC clone RP23-360P3 from chromosome 17, complete sequence
          Length = 218275

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 328   tgctgtaaaacaagacctgatt 349
             ||||||||||||||||||||||
Sbjct: 37431 tgctgtaaaacaagacctgatt 37410

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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    gccgcgcatgagaccggattt 305
              |||||||||||||||||||||
Sbjct: 827987 gccgcgcatgagaccggattt 828007

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>emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chromosome 10 Contains part
             of the gene for alpha-catenin-like protein (MGC26194)
             (VR22), complete sequence
          Length = 163119

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   attgttgaaaatgatgatgat 129
             |||||||||||||||||||||
Sbjct: 54160 attgttgaaaatgatgatgat 54180

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>emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on chromosome 6 Contains two
             CpG islands, complete sequence
          Length = 124506

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 397   tgcagtgcattttggattcagtgca 421
             |||||||||||||| ||||||||||
Sbjct: 67916 tgcagtgcattttgtattcagtgca 67892

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>emb|BX276103.13| Zebrafish DNA sequence from clone DKEY-7B17, complete sequence
          Length = 189322

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   ttgaaaatgatgatgattact 133
             |||||||||||||||||||||
Sbjct: 48382 ttgaaaatgatgatgattact 48402

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>emb|BX005059.4| Zebrafish DNA sequence from clone CH211-138A6, complete sequence
          Length = 194603

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    ttgaaaatgatgatgattact 133
              |||||||||||||||||||||
Sbjct: 185714 ttgaaaatgatgatgattact 185694

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>ref|NM_129397.2| Arabidopsis thaliana protein transporter AT2G38410 mRNA, complete cds
          Length = 2459

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  tggttgaggctgttgcagtt 270
            ||||||||||||||||||||
Sbjct: 1748 tggttgaggctgttgcagtt 1729

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>ref|XM_468173.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1880

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 160 gttggatggcttgatgtcgtggtg 183
           ||||||||||||||||||| ||||
Sbjct: 753 gttggatggcttgatgtcgcggtg 730

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>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19,
              complete sequence
          Length = 174752

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tgttgaaaatgatgatgatt 130
              ||||||||||||||||||||
Sbjct: 104824 tgttgaaaatgatgatgatt 104805

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>ref|XM_849148.1| PREDICTED: Canis familiaris similar to LINE-1 reverse transcriptase
           homolog (LOC611478), mRNA
          Length = 2301

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 531 ttttctttatataagaccat 550
           ||||||||||||||||||||
Sbjct: 178 ttttctttatataagaccat 197

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>gb|AC132148.3| Mus musculus BAC clone RP23-6N21 from chromosome 19, complete sequence
          Length = 191402

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    taaaggacctcactgctgct 498
              ||||||||||||||||||||
Sbjct: 181527 taaaggacctcactgctgct 181508

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>gb|AC124169.3| Mus musculus BAC clone RP23-151G15 from 19, complete sequence
          Length = 201188

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    taaaggacctcactgctgct 498
              ||||||||||||||||||||
Sbjct: 178104 taaaggacctcactgctgct 178123

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>ref|XM_646864.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (139.t00021)
           partial mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 tgttgaaaatgatgatgatt 130
           ||||||||||||||||||||
Sbjct: 765 tgttgaaaatgatgatgatt 784

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>gb|AC146789.30| Medicago truncatula clone mth2-71h24, complete sequence
          Length = 127922

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   tctcattttctttatataag 545
             ||||||||||||||||||||
Sbjct: 66253 tctcattttctttatataag 66272

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>emb|Z83840.7|HS216E10 Human DNA sequence from clone CTA-216E10 on chromosome 22, complete
              sequence
          Length = 122320

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    ggatttaccaaagggtaaat 319
              ||||||||||||||||||||
Sbjct: 112270 ggatttaccaaagggtaaat 112289

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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tgttgaaaatgatgatgatt 130
              ||||||||||||||||||||
Sbjct: 339766 tgttgaaaatgatgatgatt 339747

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>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence
          Length = 112322

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   tttggattcagtgcagtcac 426
             ||||||||||||||||||||
Sbjct: 31601 tttggattcagtgcagtcac 31582

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>gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 208686

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tgaaaatgatgatgattact 133
             ||||||||||||||||||||
Sbjct: 75275 tgaaaatgatgatgattact 75294

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>gb|AC004683.3| Arabidopsis thaliana chromosome 2 clone T19C21 map ve018, complete
             sequence
          Length = 81467

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tggttgaggctgttgcagtt 270
             ||||||||||||||||||||
Sbjct: 33923 tggttgaggctgttgcagtt 33904

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>gb|AC079317.25| Homo sapiens 12 BAC RP11-4K23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147862

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tgaaaatgatgatgattact 133
             ||||||||||||||||||||
Sbjct: 64741 tgaaaatgatgatgattact 64760

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>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10,
             complete sequence
          Length = 132400

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   atcatgttgggaaatataaa 482
             ||||||||||||||||||||
Sbjct: 66654 atcatgttgggaaatataaa 66673

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>gb|AF215560.1|AF215560 Pternandra multiflora NADH dehydrogenase subunit F (ndhF) gene,
           partial cds; chloroplast gene for chloroplast product
          Length = 983

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 531 ttttctttatataagaccatttac 554
           ||||||||||||||| ||||||||
Sbjct: 850 ttttctttatataagcccatttac 873

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tgttgaaaatgatgatgatt 130
              ||||||||||||||||||||
Sbjct: 339766 tgttgaaaatgatgatgatt 339747

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 160      gttggatggcttgatgtcgtggtg 183
                ||||||||||||||||||| ||||
Sbjct: 33461690 gttggatggcttgatgtcgcggtg 33461713

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>gb|AC151269.3| Mus musculus BAC clone RP24-271C20 from chromosome 17, complete
             sequence
          Length = 127948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   cttctcattttctttatata 543
             ||||||||||||||||||||
Sbjct: 11846 cttctcattttctttatata 11827

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>gb|AC127464.3| Ornithorhynchus anatinus clone OA_Bb-383O11, complete sequence
          Length = 161148

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   agcactgtcagttggatggc 169
             ||||||||||||||||||||
Sbjct: 25270 agcactgtcagttggatggc 25251

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>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0054K20
          Length = 153584

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   gttggatggcttgatgtcgtggtg 183
             ||||||||||||||||||| ||||
Sbjct: 36565 gttggatggcttgatgtcgcggtg 36588

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>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1316_E06
          Length = 110197

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   gttggatggcttgatgtcgtggtg 183
             ||||||||||||||||||| ||||
Sbjct: 92309 gttggatggcttgatgtcgcggtg 92332

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>dbj|AK120525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126P12, full
           insert sequence
          Length = 1880

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 160 gttggatggcttgatgtcgtggtg 183
           ||||||||||||||||||| ||||
Sbjct: 753 gttggatggcttgatgtcgcggtg 730

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>dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C11, full
            insert sequence
          Length = 3124

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  tgttgaaaatgatgatgatt 130
            ||||||||||||||||||||
Sbjct: 3028 tgttgaaaatgatgatgatt 3047

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>emb|CR753900.9| Zebrafish DNA sequence from clone CH211-167B13 in linkage group 10,
             complete sequence
          Length = 113731

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   atcatgttgggaaatataaa 482
             ||||||||||||||||||||
Sbjct: 54385 atcatgttgggaaatataaa 54366

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tgttgaaaatgatgatgatt 130
              ||||||||||||||||||||
Sbjct: 339763 tgttgaaaatgatgatgatt 339744

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>emb|CT030727.4| Mouse DNA sequence from clone RP23-273I12 on chromosome 17, complete
              sequence
          Length = 230658

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 524    cttctcattttctttatata 543
              ||||||||||||||||||||
Sbjct: 227995 cttctcattttctttatata 228014

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>gb|AC002563.1|AC002563 Human PAC clone 127H14 from 12q, complete sequence
          Length = 136436

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tgaaaatgatgatgattact 133
              ||||||||||||||||||||
Sbjct: 126575 tgaaaatgatgatgattact 126594

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>dbj|AB047397.2| Zygosaccharomyces rouxii ZGCY2 mRNA for glycerol dehydrogenase,
           complete cds
          Length = 1093

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 atttcatcaagacatgggaa 366
           ||||||||||||||||||||
Sbjct: 491 atttcatcaagacatgggaa 510

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>dbj|AB047396.1| Zygosaccharomyces rouxii ZGCY1 gene for glycerol dehydrogenase,
           complete cds
          Length = 1447

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 atttcatcaagacatgggaa 366
           ||||||||||||||||||||
Sbjct: 656 atttcatcaagacatgggaa 675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,522,999
Number of Sequences: 3902068
Number of extensions: 6522999
Number of successful extensions: 142425
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142175
Number of HSP's gapped (non-prelim): 250
length of query: 616
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 593
effective length of database: 17,143,297,704
effective search space: 10165975538472
effective search space used: 10165975538472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result