ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6o12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234401.1|HVU234401 Hordeum vulgare partial mRNA; clone cMW... 64 3e-08
2emb|X52472.1|TAPRP T.aestivum mRNA for a proline-rich protein 64 3e-08
3gb|AF331853.1| Saccharum hybrid cultivar CP72-2086 proline-rich ... 46 0.008
4gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.12
5gb|AY224438.1| Oryza sativa (japonica cultivar-group) isolate 23... 42 0.12
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.12
7emb|AL445564.1|MPULM02 Mycoplasma pulmonis (strain UAB CTIP) com... 40 0.48
8gb|AF221552.1|AF221552 Oryza sativa proline-rich protein RiP-15 ... 40 0.48
9dbj|AK100217.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.48
10emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, com... 40 0.48
11gb|AF337054.1| Oryza sativa repetitive proline rich protein mRNA... 40 0.48
12gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 38 1.9
13gb|AC084156.2| Caenorhabditis elegans cosmid Y46E12BL, complete ... 38 1.9
14gb|AF331851.1| Saccharum hybrid cultivar CP65-357 proline-rich p... 38 1.9
15gb|AC024765.2| Caenorhabditis elegans cosmid Y39A3CR, complete s... 36 7.5
16gb|AF077537.1| Caenorhabditis elegans cosmid F16G10, complete se... 36 7.5
17gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, com... 36 7.5
18gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, compl... 36 7.5 
>emb|AJ234401.1|HVU234401 Hordeum vulgare partial mRNA; clone cMWG0646
          Length = 694

 Score = 63.9 bits (32), Expect = 3e-08
 Identities = 49/54 (90%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 1   atgcccaaacctgagnctaagcctgaacccaagccngagctcgatgccaaaacc 54
           ||||||||||||||| |||||||||| ||||| || |||| |||||||||||||
Sbjct: 415 atgcccaaacctgagcctaagcctgagcccaaaccagagc-cgatgccaaaacc 467



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 37/42 (88%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 13  gagnctaagcctgaacccaagccngagctcgatgccaaaacc 54
           ||| ||||||| ||||||||||| |||| ||||||| |||||
Sbjct: 125 gagcctaagccagaacccaagcccgagc-cgatgcctaaacc 165
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>emb|X52472.1|TAPRP T.aestivum mRNA for a proline-rich protein
          Length = 1487

 Score = 63.9 bits (32), Expect = 3e-08
 Identities = 49/54 (90%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 1   atgcccaaacctgagnctaagcctgaacccaagccngagctcgatgccaaaacc 54
           ||||||||||||||| |||||||||| |||||||| |||| ||||||| |||||
Sbjct: 447 atgcccaaacctgagcctaagcctgagcccaagccagagc-cgatgcccaaacc 499



 Score = 56.0 bits (28), Expect = 8e-06
 Identities = 48/54 (88%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 1   atgcccaaacctgagnctaagcctgaacccaagccngagctcgatgccaaaacc 54
           ||||||||||||||| |||||||||| ||||| || |||| ||||||| |||||
Sbjct: 867 atgcccaaacctgagcctaagcctgagcccaaacccgagc-cgatgcccaaacc 919



 Score = 42.1 bits (21), Expect = 0.12
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 19  aagcctgaacccaagccngagctcgatgccaaaacc 54
           |||||||| |||||||| |||| |||||||||||||
Sbjct: 759 aagcctgagcccaagcctgagc-cgatgccaaaacc 793



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 46/54 (85%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 1   atgcccaaacctgagnctaagcctgaacccaagccngagctcgatgccaaaacc 54
           ||||| ||||| ||| | ||||| || |||||||| |||| |||||||||||||
Sbjct: 783 atgccaaaaccggagcccaagcccgagcccaagcccgagc-cgatgccaaaacc 835



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 46/54 (85%), Gaps = 1/54 (1%)
 Strand = Plus / Plus

                                                                 
Query: 1   atgcccaaacctgagnctaagcctgaacccaagccngagctcgatgccaaaacc 54
           ||||| ||||| ||  ||||||| || |||||||| |||| |||||||||||||
Sbjct: 699 atgccgaaacccgaacctaagccagagcccaagcctgagc-cgatgccaaaacc 751
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>gb|AF331853.1| Saccharum hybrid cultivar CP72-2086 proline-rich protein mRNA,
           partial sequence
          Length = 1173

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 4   cccaaacctgagnctaagcctgaacccaagccngagc 40
           |||||||| ||| ||||||||||||| ||||| ||||
Sbjct: 797 cccaaaccagagcctaagcctgaaccgaagccagagc 833



 Score = 46.1 bits (23), Expect = 0.008
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 2   tgcccaaacctgagnctaagcctgaacccaagcc 35
           |||| ||||| ||| |||||||||||||||||||
Sbjct: 423 tgccgaaaccagagcctaagcctgaacccaagcc 456
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>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
             complete sequence
          Length = 138209

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 10    cctgagnctaagcctgaacccaagccngagc 40
             |||||| ||||||||||||| ||||| ||||
Sbjct: 83621 cctgagcctaagcctgaacctaagcctgagc 83591



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 7     aaacctgagnctaagcctgaacc 29
             ||||||||| |||||||||||||
Sbjct: 83882 aaacctgagcctaagcctgaacc 83860



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 7     aaacctgagnctaagcctgaacc 29
             ||||||||| |||||||||||||
Sbjct: 58766 aaacctgagcctaagcctgaacc 58744
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>gb|AY224438.1| Oryza sativa (japonica cultivar-group) isolate 23221 proline-rich
           protein mRNA, complete cds
          Length = 1251

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 10  cctgagnctaagcctgaacccaagccngagc 40
           |||||| ||||||||||||| ||||| ||||
Sbjct: 550 cctgagcctaagcctgaacctaagcctgagc 580



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 7   aaacctgagnctaagcctgaacc 29
           ||||||||| |||||||||||||
Sbjct: 289 aaacctgagcctaagcctgaacc 311
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.12
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                              
Query: 10      cctgagnctaagcctgaacccaagccngagc 40
               |||||| ||||||||||||| ||||| ||||
Sbjct: 7647226 cctgagcctaagcctgaacctaagcctgagc 7647196



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 7       aaacctgagnctaagcctgaacc 29
               ||||||||| |||||||||||||
Sbjct: 7647487 aaacctgagcctaagcctgaacc 7647465



 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 7       aaacctgagnctaagcctgaacc 29
               ||||||||| |||||||||||||
Sbjct: 7622371 aaacctgagcctaagcctgaacc 7622349
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>emb|AL445564.1|MPULM02 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3
          Length = 321250

 Score = 40.1 bits (20), Expect = 0.48
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 3      gcccaaacctgagnctaagcctgaacc 29
              ||||||||||||| ||||||| |||||
Sbjct: 201983 gcccaaacctgagcctaagcccgaacc 202009
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>gb|AF221552.1|AF221552 Oryza sativa proline-rich protein RiP-15 mRNA, partial cds
          Length = 525

 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 7   aaacctgagnctaagcctgaacc 29
           ||||||||| |||||||||||||
Sbjct: 270 aaacctgagcctaagcctgaacc 292
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>dbj|AK100217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045I16, full
           insert sequence
          Length = 1510

 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 7   aaacctgagnctaagcctgaacc 29
           ||||||||| |||||||||||||
Sbjct: 413 aaacctgagcctaagcctgaacc 435
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>emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, complete sequence
          Length = 277607

 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     aaacctgagnctaagcctgaacc 29
             ||||||||| |||||||||||||
Sbjct: 38579 aaacctgagcctaagcctgaacc 38601
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>gb|AF337054.1| Oryza sativa repetitive proline rich protein mRNA, complete cds
          Length = 1493

 Score = 40.1 bits (20), Expect = 0.48
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 7   aaacctgagnctaagcctgaacc 29
           ||||||||| |||||||||||||
Sbjct: 382 aaacctgagcctaagcctgaacc 404
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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 38.2 bits (19), Expect = 1.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 17      ctaagcctgaacccaagcc 35
               |||||||||||||||||||
Sbjct: 1777238 ctaagcctgaacccaagcc 1777256
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>gb|AC084156.2| Caenorhabditis elegans cosmid Y46E12BL, complete sequence
          Length = 46000

 Score = 38.2 bits (19), Expect = 1.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 3     gcccaaacctgagnctaagcct 24
             ||||||||||||| ||||||||
Sbjct: 29715 gcccaaacctgagcctaagcct 29736
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>gb|AF331851.1| Saccharum hybrid cultivar CP65-357 proline-rich protein (PRP) gene,
            partial cds
          Length = 2548

 Score = 38.2 bits (19), Expect = 1.9
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                              
Query: 2    tgcccaaacctgagnctaagcctgaacccaagcc 35
            |||| ||||| ||| ||||||||||||| |||||
Sbjct: 2480 tgccgaaaccagagcctaagcctgaacctaagcc 2513
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>gb|AC024765.2| Caenorhabditis elegans cosmid Y39A3CR, complete sequence
          Length = 36348

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 3     gcccaaacctgagnctaagcc 23
             ||||||||||||| |||||||
Sbjct: 34940 gcccaaacctgagcctaagcc 34960
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>gb|AF077537.1| Caenorhabditis elegans cosmid F16G10, complete sequence
          Length = 41718

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 17   ctaagcctgaacccaagc 34
            ||||||||||||||||||
Sbjct: 2934 ctaagcctgaacccaagc 2951
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>gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, complete sequence
          Length = 236661

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 1     atgcccaaacctgagnctaag 21
             ||||||||||||||| |||||
Sbjct: 13713 atgcccaaacctgaggctaag 13693
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>gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, complete sequence
          Length = 222061

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 1     atgcccaaacctgagnctaag 21
             ||||||||||||||| |||||
Sbjct: 74038 atgcccaaacctgaggctaag 74058


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,047
Number of Sequences: 3902068
Number of extensions: 155047
Number of successful extensions: 31660
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31561
Number of HSP's gapped (non-prelim): 97
length of query: 54
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 34
effective length of database: 17,155,003,908
effective search space: 583270132872
effective search space used: 583270132872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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