| Clone Name | bags7d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473919.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4887 Score = 60.0 bits (30), Expect = 3e-07 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1 gaatgctctaggactagatgctgaggtttctgaggctg 38 ||||||||| ||||||||||||||||| |||||||||| Sbjct: 4098 gaatgctctgggactagatgctgaggtctctgaggctg 4135
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 46.1 bits (23), Expect = 0.004 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1 gaatgctctaggactagatgctgaggt 27 ||||||||| ||||||||||||||||| Sbjct: 117092 gaatgctctgggactagatgctgaggt 117066
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.004 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1 gaatgctctaggactagatgctgaggt 27 ||||||||| ||||||||||||||||| Sbjct: 31539409 gaatgctctgggactagatgctgaggt 31539383
>emb|AJ535215.1|OSA535215 Oryza sativa (japonica cultivar-group) mrp1 gene for MRP-like ABC transporter, exons 1-28 Length = 11038 Score = 46.1 bits (23), Expect = 0.004 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1 gaatgctctaggactagatgctgaggt 27 ||||||||| ||||||||||||||||| Sbjct: 8825 gaatgctctgggactagatgctgaggt 8851
>ref|NM_127726.2| Arabidopsis thaliana phosphatidylinositol transporter/ transporter AT2G21540 transcript variant AT2G21540.1 mRNA, complete cds Length = 2106 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gatgctgaggtttctgagg 35 ||||||||||||||||||| Sbjct: 469 gatgctgaggtttctgagg 487
>ref|NM_001036312.1| Arabidopsis thaliana phosphatidylinositol transporter/ transporter AT2G21540 transcript variant AT2G21540.2 mRNA, complete cds Length = 2079 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gatgctgaggtttctgagg 35 ||||||||||||||||||| Sbjct: 435 gatgctgaggtttctgagg 453
>gb|AC007119.6| Arabidopsis thaliana chromosome 2 clone F2G1 map mi238, complete sequence Length = 54433 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gatgctgaggtttctgagg 35 ||||||||||||||||||| Sbjct: 52617 gatgctgaggtttctgagg 52635
>gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence Length = 125045 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 gatgctgaggtttctgagg 35 ||||||||||||||||||| Sbjct: 120410 gatgctgaggtttctgagg 120392
>gb|AY057587.1| Arabidopsis thaliana At2g21540/F2G1.19 mRNA, complete cds Length = 2030 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gatgctgaggtttctgagg 35 ||||||||||||||||||| Sbjct: 471 gatgctgaggtttctgagg 489
>dbj|AK176420.1| Arabidopsis thaliana mRNA for putative phosphatidylinositol/phophatidylcholine transfer protein, complete cds, clone: RAFL24-15-M01 Length = 2090 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gatgctgaggtttctgagg 35 ||||||||||||||||||| Sbjct: 435 gatgctgaggtttctgagg 453
>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete sequence Length = 175057 Score = 38.2 bits (19), Expect = 1.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 agatgctgaggtttctgag 34 ||||||||||||||||||| Sbjct: 37030 agatgctgaggtttctgag 37012
>gb|AC120400.11| Mus musculus chromosome 1, clone RP24-351P4, complete sequence Length = 144055 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tagatgctgaggtttctg 32 |||||||||||||||||| Sbjct: 21013 tagatgctgaggtttctg 20996
>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence Length = 206515 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 ctaggactagatgctgag 25 |||||||||||||||||| Sbjct: 91119 ctaggactagatgctgag 91136
>gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, complete sequence Length = 182640 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tagatgctgaggtttctg 32 |||||||||||||||||| Sbjct: 167814 tagatgctgaggtttctg 167797
>gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome 15, complete sequence Length = 193211 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 20 gctgaggtttctgaggct 37 |||||||||||||||||| Sbjct: 112704 gctgaggtttctgaggct 112687
>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence Length = 186314 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 ctaggactagatgctgag 25 |||||||||||||||||| Sbjct: 129038 ctaggactagatgctgag 129055
>gb|AC160531.16| Mus musculus chromosome 3, clone RP24-374F22, complete sequence Length = 162213 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 ctgaggtttctgaggctg 38 |||||||||||||||||| Sbjct: 122582 ctgaggtttctgaggctg 122599 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 246,853 Number of Sequences: 3902068 Number of extensions: 246853 Number of successful extensions: 66065 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66032 Number of HSP's gapped (non-prelim): 33 length of query: 38 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 18 effective length of database: 17,155,003,908 effective search space: 308790070344 effective search space used: 308790070344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)