ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473919.1| Oryza sativa (japonica cultivar-group), predic... 60 3e-07
2emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 46 0.004
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.004
4emb|AJ535215.1|OSA535215 Oryza sativa (japonica cultivar-group) ... 46 0.004
5ref|NM_127726.2| Arabidopsis thaliana phosphatidylinositol trans... 38 1.0
6ref|NM_001036312.1| Arabidopsis thaliana phosphatidylinositol tr... 38 1.0
7gb|AC007119.6| Arabidopsis thaliana chromosome 2 clone F2G1 map ... 38 1.0
8gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map... 38 1.0
9gb|AY057587.1| Arabidopsis thaliana At2g21540/F2G1.19 mRNA, comp... 38 1.0
10dbj|AK176420.1| Arabidopsis thaliana mRNA for putative phosphati... 38 1.0
11emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chr... 38 1.0
12gb|AC120400.11| Mus musculus chromosome 1, clone RP24-351P4, com... 36 4.0
13gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome... 36 4.0
14gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, com... 36 4.0
15gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome... 36 4.0
16gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B... 36 4.0
17gb|AC160531.16| Mus musculus chromosome 3, clone RP24-374F22, co... 36 4.0

>ref|XM_473919.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4887

 Score = 60.0 bits (30), Expect = 3e-07
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                  
Query: 1    gaatgctctaggactagatgctgaggtttctgaggctg 38
            ||||||||| ||||||||||||||||| ||||||||||
Sbjct: 4098 gaatgctctgggactagatgctgaggtctctgaggctg 4135



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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
              complete sequence
          Length = 164805

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 1      gaatgctctaggactagatgctgaggt 27
              ||||||||| |||||||||||||||||
Sbjct: 117092 gaatgctctgggactagatgctgaggt 117066



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 1        gaatgctctaggactagatgctgaggt 27
                ||||||||| |||||||||||||||||
Sbjct: 31539409 gaatgctctgggactagatgctgaggt 31539383



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>emb|AJ535215.1|OSA535215 Oryza sativa (japonica cultivar-group) mrp1 gene for MRP-like ABC
            transporter, exons 1-28
          Length = 11038

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 1    gaatgctctaggactagatgctgaggt 27
            ||||||||| |||||||||||||||||
Sbjct: 8825 gaatgctctgggactagatgctgaggt 8851



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>ref|NM_127726.2| Arabidopsis thaliana phosphatidylinositol transporter/ transporter
           AT2G21540 transcript variant AT2G21540.1 mRNA, complete
           cds
          Length = 2106

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  gatgctgaggtttctgagg 35
           |||||||||||||||||||
Sbjct: 469 gatgctgaggtttctgagg 487



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>ref|NM_001036312.1| Arabidopsis thaliana phosphatidylinositol transporter/ transporter
           AT2G21540 transcript variant AT2G21540.2 mRNA, complete
           cds
          Length = 2079

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  gatgctgaggtttctgagg 35
           |||||||||||||||||||
Sbjct: 435 gatgctgaggtttctgagg 453



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>gb|AC007119.6| Arabidopsis thaliana chromosome 2 clone F2G1 map mi238, complete
             sequence
          Length = 54433

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    gatgctgaggtttctgagg 35
             |||||||||||||||||||
Sbjct: 52617 gatgctgaggtttctgagg 52635



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>gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete
              sequence
          Length = 125045

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 17     gatgctgaggtttctgagg 35
              |||||||||||||||||||
Sbjct: 120410 gatgctgaggtttctgagg 120392



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>gb|AY057587.1| Arabidopsis thaliana At2g21540/F2G1.19 mRNA, complete cds
          Length = 2030

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  gatgctgaggtttctgagg 35
           |||||||||||||||||||
Sbjct: 471 gatgctgaggtttctgagg 489



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>dbj|AK176420.1| Arabidopsis thaliana mRNA for putative
           phosphatidylinositol/phophatidylcholine transfer
           protein, complete cds, clone: RAFL24-15-M01
          Length = 2090

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  gatgctgaggtttctgagg 35
           |||||||||||||||||||
Sbjct: 435 gatgctgaggtttctgagg 453



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>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete
             sequence
          Length = 175057

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    agatgctgaggtttctgag 34
             |||||||||||||||||||
Sbjct: 37030 agatgctgaggtttctgag 37012



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>gb|AC120400.11| Mus musculus chromosome 1, clone RP24-351P4, complete sequence
          Length = 144055

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    tagatgctgaggtttctg 32
             ||||||||||||||||||
Sbjct: 21013 tagatgctgaggtttctg 20996



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>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence
          Length = 206515

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     ctaggactagatgctgag 25
             ||||||||||||||||||
Sbjct: 91119 ctaggactagatgctgag 91136



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>gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, complete sequence
          Length = 182640

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 15     tagatgctgaggtttctg 32
              ||||||||||||||||||
Sbjct: 167814 tagatgctgaggtttctg 167797



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>gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome 15, complete sequence
          Length = 193211

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     gctgaggtttctgaggct 37
              ||||||||||||||||||
Sbjct: 112704 gctgaggtttctgaggct 112687



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>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence
          Length = 186314

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      ctaggactagatgctgag 25
              ||||||||||||||||||
Sbjct: 129038 ctaggactagatgctgag 129055



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>gb|AC160531.16| Mus musculus chromosome 3, clone RP24-374F22, complete sequence
          Length = 162213

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     ctgaggtttctgaggctg 38
              ||||||||||||||||||
Sbjct: 122582 ctgaggtttctgaggctg 122599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 246,853
Number of Sequences: 3902068
Number of extensions: 246853
Number of successful extensions: 66065
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66032
Number of HSP's gapped (non-prelim): 33
length of query: 38
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 18
effective length of database: 17,155,003,908
effective search space: 308790070344
effective search space used: 308790070344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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