>TI17A_DROME (Q9VNA0) Probable mitochondrial import inner membrane translocase|
           subunit Tim17 1
          Length = 179

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +2

Query: 170 RVGLLFGGFT---GSYHALRCFLRRFRKKETPFNAILSGSVAG 289
           R GL+ G F     ++ A+ C L  FRKKE P+NAI+SG+  G
Sbjct: 58  RSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTG 100

>TIM17_CAEEL (O44477) Probable mitochondrial import inner membrane translocase|
           subunit Tim17
          Length = 181

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 152 VREEACRVGLLFGGFTGSYHALRCFLRRFRKKETPFNAILSGSVAG 289
           VR  +   G+ F  + G +  + C L   RKKE P N+I+SG + G
Sbjct: 53  VRMRSTLTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTG 98

>TIM17_YEAST (P39515) Mitochondrial import inner membrane translocase subunit|
           TIM17 (Mitochondrial protein import protein 2)
           (Mitochondrial inner membrane protein MIM17)
          Length = 158

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 152 VREEACRVGLLFGGFTGSYHALRCFLRRFRKKETPFNAILSGSVAGLAI 298
           ++  A  +G  FG + G +    C ++  RK+E P+NAI++G   G A+
Sbjct: 54  IKARAPVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGAL 102

>TIM17_SCHPO (P87130) Mitochondrial import inner membrane translocase subunit|
           tim17 (Mitochondrial protein import protein 2)
          Length = 164

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 185 FGGFTGSYHALRCFLRRFRKKETPFNAILSGSVAGLAI 298
           FG + G +    C ++  R+KE P+NAI++G   G A+
Sbjct: 66  FGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGAL 103

>UREH_HAEIN (P44397) Urease accessory protein ureH|
          Length = 261

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 471 YIIWADATEKSNASPCLQWLPQKWNL-FLDFAELYAH 364
           Y +  D  ++   S C+QWLP K NL  L   E Y+H
Sbjct: 164 YALQNDGKKRPLVSDCIQWLPSKMNLTALSQMENYSH 200

>SUL2_YEAST (Q12325) Sulfate permease 2 (High-affinity sulfate transporter 2)|
          Length = 893

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +2

Query: 62  ILLRAFKLARRRSYGSLLDLKQLVSEKDLIVREEACRVGLLFGGFTGSYHALRCFLRRFR 241
           I+L    +A  +S+G + D K +V +++LI    A  V  L G F  +Y A   F R   
Sbjct: 417 IVLLLEHIAISKSFGRINDYK-VVPDQELI----AIGVSNLLGTFFNAYPATGSFSRSAL 471

Query: 242 KKE----TPFNAILSGSVAGLAI 298
           K +    TP + + SGS   LA+
Sbjct: 472 KAKCNVRTPLSGLFSGSCVLLAL 494

>Y301_BUCAI (P57387) UPF0135 protein BU301|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 453 ATEKSNASPCLQWLPQKWNLFLDFAELY 370
           ATEK       +WL +K++L +DF ++Y
Sbjct: 217 ATEKDGVKSLGEWLQRKYDLCVDFIDIY 244

>Y756_AQUAE (O66958) UPF0128 protein aq_756|
          Length = 229

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 130 GFGERSNSEGGSLSGRVTFWRIHWIISCTAMFP*EISQKGNT 255
           GFG  + +  G    +   +R+ W++   A+F  +IS+K NT
Sbjct: 182 GFGRVALAYFGKTREKDNRFRVSWLLPTIALFDIDISEKANT 223

>AROC_BACHD (Q9KCB7) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 390

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 2   AAGNLCRTFLLSYGVRVGIGILLRAFKLARRRSYGSLLDLKQL 130
           AAG + +  L ++G+ VG  +L      A + SY  L +LK+L
Sbjct: 143 AAGAVAKKILRTFGIEVGSHVLEIGGVKAEKTSYDQLSNLKEL 185

>TAF1_HUMAN (P21675) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 250 kDa
            subunit) (TAF(II)250) (TAFII-250) (TAFII250)
            (TBP-associated factor 250 kDa) (p250) (Cell cycle gene 1
            protein)
          Length = 1872

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 103  VGSAARELEGTEEDPDSDTDAVGEQEGXAQVPR 5
            + SA  E + T+E  D D D   E+EG  Q P+
Sbjct: 1676 IPSATPEKQVTQEGEDGDGDLADEEEGTVQQPQ 1708


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,586,225
Number of Sequences: 219361
Number of extensions: 1101488
Number of successful extensions: 3256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3250
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)