ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
2dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
3ref|NM_124494.1| Arabidopsis thaliana unknown protein AT5G51150 ... 68 3e-08
4gb|AY091374.1| Arabidopsis thaliana unknown protein (At5g51150) ... 68 3e-08
5gb|AY045838.1| Arabidopsis thaliana unknown protein (At5g51150) ... 68 3e-08
6dbj|AB023044.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 60 7e-06
7gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 0.41
8ref|XM_571126.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 1.6
9gb|AC027184.15| Mus musculus chromosome 14, clone RP23-138C14, c... 40 6.4
10ref|XM_454901.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E21109g ... 40 6.4
11emb|AL109918.25|HSDJ152L7 Human DNA sequence from clone RP1-152L... 40 6.4
12emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.4
13gb|AC140280.3| Mus musculus BAC clone RP23-345I5 from chromosome... 40 6.4
14gb|AC013640.7| Homo sapiens chromosome 15, clone RP11-16L14, com... 40 6.4
15emb|AL929523.5| Zebrafish DNA sequence from clone CH211-250I3, c... 40 6.4
16gb|AC007429.11|AC007429 Homo sapiens, clone hRPK.70_A_1, complet... 40 6.4 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  234 bits (118), Expect = 2e-58
 Identities = 136/142 (95%)
 Strand = Plus / Minus

                                                                            
Query: 123      agcaactggtttcggagaaagatctaatagtgagggaggaagcttgtcgggtagggttac 182
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 18452240 agcaactggtttcggagaaagatctaatagtgagggaggaagcttgccgggtaggattac 18452181

                                                                            
Query: 183      tttttggaggattcactggatcatatcatgcactgcgatgtttccttaggagatttcgca 242
                |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct: 18452180 tttttggaggattcactggatcatatcatgcacttcgatgtttccttcggagatttcgga 18452121

                                      
Query: 243      aaaaggaaacaccattcaatgc 264
                |||||||||||||||| |||||
Sbjct: 18452120 aaaaggaaacaccatttaatgc 18452099



 Score =  145 bits (73), Expect = 2e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                            
Query: 2        gcggcggggaacctgtgccgnaccttcctgctctcctacggcgtccgtgtcggaatcggg 61
                |||||||||||||||||||  | |||||||||||||||||||||||| ||||| ||||| 
Sbjct: 18453158 gcggcggggaacctgtgccagagcttcctgctctcctacggcgtccgggtcggcatcggc 18453099

                                                                        
Query: 62       atcctcctccgtgccttcaagctcgcgcgccgcagatcctacggctcgctcctcga 117
                ||||||||||| |||||||||||||| |||||||||||||||  ||| ||||||||
Sbjct: 18453098 atcctcctccgcgccttcaagctcgcccgccgcagatcctactcctccctcctcga 18453043



 Score =  135 bits (68), Expect = 1e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                            
Query: 265      aatattatcaggttccgtggcaggcttggcgatactagcactagatgattcgagtaggag 324
                ||||||| ||||||| |||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 18451892 aatattagcaggttcggtggcaggcttggcgatagtagcgctagatgattcaagtaggag 18451833

                                                    
Query: 325      acgcaccctttctctatatcttctagcaaggcttgc 360
                 ||||||||||||||||||||||| |||||||||||
Sbjct: 18451832 gcgcaccctttctctatatcttctggcaaggcttgc 18451797



 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                            
Query: 362      cagtgtgcatataactccgcaaagtctaaaaatagattccacttctggggtagccattgg 421
                |||||||||||||| || ||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct: 18451708 cagtgtgcatataattctgcaaagtctaagaacagatttcacttttggggaagccattgg 18451649

                                       
Query: 422      agacatggagatgcattactttt 444
                || ||||||||||||||||||||
Sbjct: 18451648 aggcatggagatgcattactttt 18451626
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>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score =  234 bits (118), Expect = 2e-58
 Identities = 136/142 (95%)
 Strand = Plus / Minus

                                                                         
Query: 123   agcaactggtttcggagaaagatctaatagtgagggaggaagcttgtcgggtagggttac 182
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 44088 agcaactggtttcggagaaagatctaatagtgagggaggaagcttgccgggtaggattac 44029

                                                                         
Query: 183   tttttggaggattcactggatcatatcatgcactgcgatgtttccttaggagatttcgca 242
             |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct: 44028 tttttggaggattcactggatcatatcatgcacttcgatgtttccttcggagatttcgga 43969

                                   
Query: 243   aaaaggaaacaccattcaatgc 264
             |||||||||||||||| |||||
Sbjct: 43968 aaaaggaaacaccatttaatgc 43947



 Score =  145 bits (73), Expect = 2e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                         
Query: 2     gcggcggggaacctgtgccgnaccttcctgctctcctacggcgtccgtgtcggaatcggg 61
             |||||||||||||||||||  | |||||||||||||||||||||||| ||||| ||||| 
Sbjct: 45006 gcggcggggaacctgtgccagagcttcctgctctcctacggcgtccgggtcggcatcggc 44947

                                                                     
Query: 62    atcctcctccgtgccttcaagctcgcgcgccgcagatcctacggctcgctcctcga 117
             ||||||||||| |||||||||||||| |||||||||||||||  ||| ||||||||
Sbjct: 44946 atcctcctccgcgccttcaagctcgcccgccgcagatcctactcctccctcctcga 44891



 Score =  135 bits (68), Expect = 1e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                         
Query: 265   aatattatcaggttccgtggcaggcttggcgatactagcactagatgattcgagtaggag 324
             ||||||| ||||||| |||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 43740 aatattagcaggttcggtggcaggcttggcgatagtagcgctagatgattcaagtaggag 43681

                                                 
Query: 325   acgcaccctttctctatatcttctagcaaggcttgc 360
              ||||||||||||||||||||||| |||||||||||
Sbjct: 43680 gcgcaccctttctctatatcttctggcaaggcttgc 43645



 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                         
Query: 362   cagtgtgcatataactccgcaaagtctaaaaatagattccacttctggggtagccattgg 421
             |||||||||||||| || ||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct: 43556 cagtgtgcatataattctgcaaagtctaagaacagatttcacttttggggaagccattgg 43497

                                    
Query: 422   agacatggagatgcattactttt 444
             || ||||||||||||||||||||
Sbjct: 43496 aggcatggagatgcattactttt 43474
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>ref|NM_124494.1| Arabidopsis thaliana unknown protein AT5G51150 mRNA, complete cds
          Length = 1959

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 407 tggggtagccattggagacatggagatgcattacttttctctgtcgcatctgcccagatt 466
           ||||||||||||||||||||||||||| | |||||||| ||| | |||| ||| ||| ||
Sbjct: 675 tggggtagccattggagacatggagattcgttacttttttctcttgcatgtgctcaggtt 734

                 
Query: 467 atgtat 472
           ||||||
Sbjct: 735 atgtat 740



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                       
Query: 113 ctcgatctgaagcaactggtttcggagaaagatctaatagtgagggaggaagcttgtcgg 172
           |||||||| |||||||| ||||| ||||||||| | ||||| ||||||||||| ||||| 
Sbjct: 381 ctcgatcttaagcaacttgtttcagagaaagatttgatagttagggaggaagcatgtcgt 440

                                                    
Query: 173 gtagggttactttttggaggattcactggatcatatcatgc 213
            | ||  |||||||||| || || ||||| || ||||||||
Sbjct: 441 attggtctactttttggtggctttactggctcgtatcatgc 481
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>gb|AY091374.1| Arabidopsis thaliana unknown protein (At5g51150) mRNA, complete cds
          Length = 1627

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 407 tggggtagccattggagacatggagatgcattacttttctctgtcgcatctgcccagatt 466
           ||||||||||||||||||||||||||| | |||||||| ||| | |||| ||| ||| ||
Sbjct: 625 tggggtagccattggagacatggagattcgttacttttttctcttgcatgtgctcaggtt 684

                 
Query: 467 atgtat 472
           ||||||
Sbjct: 685 atgtat 690



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                       
Query: 113 ctcgatctgaagcaactggtttcggagaaagatctaatagtgagggaggaagcttgtcgg 172
           |||||||| |||||||| ||||| ||||||||| | ||||| ||||||||||| ||||| 
Sbjct: 331 ctcgatcttaagcaacttgtttcagagaaagatttgatagttagggaggaagcatgtcgt 390

                                                    
Query: 173 gtagggttactttttggaggattcactggatcatatcatgc 213
            | ||  |||||||||| || || ||||| || ||||||||
Sbjct: 391 attggtctactttttggtggctttactggctcgtatcatgc 431
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>gb|AY045838.1| Arabidopsis thaliana unknown protein (At5g51150) mRNA, complete cds
          Length = 1975

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 407 tggggtagccattggagacatggagatgcattacttttctctgtcgcatctgcccagatt 466
           ||||||||||||||||||||||||||| | |||||||| ||| | |||| ||| ||| ||
Sbjct: 675 tggggtagccattggagacatggagattcgttacttttttctcttgcatgtgctcaggtt 734

                 
Query: 467 atgtat 472
           ||||||
Sbjct: 735 atgtat 740



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                       
Query: 113 ctcgatctgaagcaactggtttcggagaaagatctaatagtgagggaggaagcttgtcgg 172
           |||||||| |||||||| ||||| ||||||||| | ||||| ||||||||||| ||||| 
Sbjct: 381 ctcgatcttaagcaacttgtttcagagaaagatttgatagttagggaggaagcatgtcgt 440

                                                    
Query: 173 gtagggttactttttggaggattcactggatcatatcatgc 213
            | ||  |||||||||| || || ||||| || ||||||||
Sbjct: 441 attggtctactttttggtggctttactggctcgtatcatgc 481
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>dbj|AB023044.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD22
          Length = 87180

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 407   tggggtagccattggagacatggagatgcattactttt 444
             ||||||||||||||||||||||||||| | ||||||||
Sbjct: 23825 tggggtagccattggagacatggagattcgttactttt 23862



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                         
Query: 123   agcaactggtttcggagaaagatctaatagtgagggaggaagcttgtcgggtagggttac 182
             ||||||| ||||| ||||||||| | ||||| ||||||||||| |||||  | ||  |||
Sbjct: 23309 agcaacttgtttcagagaaagatttgatagttagggaggaagcatgtcgtattggtctac 23368

                                            
Query: 183   tttttggaggattcactggatcatatcatgc 213
             ||||||| || || ||||| || ||||||||
Sbjct: 23369 tttttggtggctttactggctcgtatcatgc 23399
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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
              sequence
          Length = 1507550

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 320    aggagacgcaccctttctctat 341
              ||||||||||||||||||||||
Sbjct: 108624 aggagacgcaccctttctctat 108603
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>ref|XM_571126.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNE00420) partial mRNA
          Length = 2839

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 321  ggagacgcaccctttctctat 341
            |||||||||||||||||||||
Sbjct: 1046 ggagacgcaccctttctctat 1066
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>gb|AC027184.15| Mus musculus chromosome 14, clone RP23-138C14, complete sequence
          Length = 196806

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    tatcttctagcaaggcttgc 360
              ||||||||||||||||||||
Sbjct: 155362 tatcttctagcaaggcttgc 155343
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>ref|XM_454901.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E21109g predicted mRNA
          Length = 2946

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tttggaggattcactggatc 204
           ||||||||||||||||||||
Sbjct: 772 tttggaggattcactggatc 791
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>emb|AL109918.25|HSDJ152L7 Human DNA sequence from clone RP1-152L7 on chromosome 6p11.2-12.3
             Contains three glutathione S-transferase pseudogenes, the
             GSTA2 gene for glutathione S-transferase A2, the gene for
             a novel protein (PTD011), a HNRNP A/B related protein
             pseudogene, a SH3BGRL3-like pseudogene and CpG Islands,
             complete sequence
          Length = 175940

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   gttactttttggaggattca 197
             ||||||||||||||||||||
Sbjct: 79317 gttactttttggaggattca 79298
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     tttggaggattcactggatc 204
               ||||||||||||||||||||
Sbjct: 1880911 tttggaggattcactggatc 1880892
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>gb|AC140280.3| Mus musculus BAC clone RP23-345I5 from chromosome 14, complete sequence
          Length = 205109

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    tatcttctagcaaggcttgc 360
              ||||||||||||||||||||
Sbjct: 198208 tatcttctagcaaggcttgc 198227
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>gb|AC013640.7| Homo sapiens chromosome 15, clone RP11-16L14, complete sequence
          Length = 149555

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ccattcaatgcaatattatc 273
             ||||||||||||||||||||
Sbjct: 32605 ccattcaatgcaatattatc 32586
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>emb|AL929523.5| Zebrafish DNA sequence from clone CH211-250I3, complete sequence
          Length = 133678

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   caactggtttcggagaaaga 144
             ||||||||||||||||||||
Sbjct: 17509 caactggtttcggagaaaga 17490
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>gb|AC007429.11|AC007429 Homo sapiens, clone hRPK.70_A_1, complete sequence
          Length = 160025

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ccattcaatgcaatattatc 273
             ||||||||||||||||||||
Sbjct: 10735 ccattcaatgcaatattatc 10716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,624,136
Number of Sequences: 3902068
Number of extensions: 3624136
Number of successful extensions: 61315
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61245
Number of HSP's gapped (non-prelim): 70
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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