ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6n19 |
|---|---|
| Clone Library Name | barley_pub |
>RRS1_ARATH (Q9SH88) Ribosome biogenesis regulatory protein homolog| Length = 318 Score = 183 bits (464), Expect = 4e-46 Identities = 94/170 (55%), Positives = 120/170 (70%) Frame = +2 Query: 35 KRTYGYDRVNDDSXMSPLLKPN*QXEPGVDPFAQRKEEKKSRVDKQEKNSLGNLKNAAKV 214 KR +GYDRVNDD+ + P+++ EPGVDPFA+R ++KK RV KQEKN L NLK A K Sbjct: 121 KRRHGYDRVNDDNDV-PIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKA 179 Query: 215 GALPSHIQLAATSVPITGTKADLPRKAKKEDLENVXXXXXXXXXXXXKFDKKLPGEKPLK 394 GALPSH+QLAATS+PI+GTKA P+K K++L +V KFDKKLPGEKP K Sbjct: 180 GALPSHVQLAATSLPISGTKAQ-PKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPK 238 Query: 395 KAGKNRKFLPVVEGKGMGNLEKQQNEKILNSLLAKNFEEPLDVSKAITMY 544 K GK+ K+LPVV G+G N EK+Q +L+ + +K+ E L+V KAI MY Sbjct: 239 KQGKHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMY 288
>RRS1_CAEEL (Q9XVT0) Ribosome biogenesis regulatory protein homolog| Length = 333 Score = 60.5 bits (145), Expect = 4e-09 Identities = 41/128 (32%), Positives = 63/128 (49%) Frame = +2 Query: 35 KRTYGYDRVNDDSXMSPLLKPN*QXEPGVDPFAQRKEEKKSRVDKQEKNSLGNLKNAAKV 214 K TYGY R NDD+ + P+ +P D FA+R+E+KK RV KN + +KN A+ Sbjct: 117 KPTYGYRRGNDDTKDWLIEIPDNAEDPNKDFFAERREKKKERV---AKNDMQRMKNLAR- 172 Query: 215 GALPSHIQLAATSVPITGTKADLPRKAKKEDLENVXXXXXXXXXXXXKFDKKLPGEKPLK 394 + + ++ ++ + G D K+K++ + KF + L GEK Sbjct: 173 -QMKTTVKSGPSTEKMIGVGVDAKEKSKQQ-VRFAVDRAKLATASAGKFQEGLKGEKANV 230 Query: 395 KAGKNRKF 418 K GK RKF Sbjct: 231 KTGKKRKF 238
>RRS1_MOUSE (Q9CYH6) Ribosome biogenesis regulatory protein homolog| Length = 365 Score = 60.5 bits (145), Expect = 4e-09 Identities = 51/166 (30%), Positives = 75/166 (45%) Frame = +2 Query: 35 KRTYGYDRVNDDSXMSPLLKPN*QXEPGVDPFAQRKEEKKSRVDKQEKNSLGNLKNAAKV 214 +R +GY R DD+ + P +P D FA+R + KK RV K E N L NL A K+ Sbjct: 141 RRRWGYKRARDDTKEWLIEVPG-SADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM 199 Query: 215 GALPSHIQLAATSVPITGTKADLPRKAKKEDLENVXXXXXXXXXXXXKFDKKLPGEKPLK 394 +PS L T KE+L +F ++LP EK + Sbjct: 200 -QMPSSAGLHPTG------------HQSKEELGRAMQVAKVSTASVGRFQERLPKEKAPR 246 Query: 395 KAGKNRKFLPVVEGKGMGNLEKQQNEKILNSLLAKNFEEPLDVSKA 532 +GK RKF P+ G EK+ ++L + +K + LDV++A Sbjct: 247 GSGKKRKFQPLF---GDFAAEKKNQLELLRVMNSK--KPRLDVTRA 287
>RRS1_HUMAN (Q15050) Ribosome biogenesis regulatory protein homolog| Length = 365 Score = 60.5 bits (145), Expect = 4e-09 Identities = 53/166 (31%), Positives = 79/166 (47%) Frame = +2 Query: 35 KRTYGYDRVNDDSXMSPLLKPN*QXEPGVDPFAQRKEEKKSRVDKQEKNSLGNLKNAAKV 214 +R +GY R DD+ + P +P D FA+R + KK RV K E N L NL A K+ Sbjct: 141 RRRWGYQRARDDTKEWLIEVPG-NADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM 199 Query: 215 GALPSHIQLAATSVPITGTKADLPRKAKKEDLENVXXXXXXXXXXXXKFDKKLPGEKPLK 394 LPS A + TG ++ KE+L +F ++LP EK + Sbjct: 200 -QLPS-----AAGLHPTGHQS-------KEELGRAMQVAKVSTASVGRFQERLPKEKVPR 246 Query: 395 KAGKNRKFLPVVEGKGMGNLEKQQNEKILNSLLAKNFEEPLDVSKA 532 +GK RKF P+ G EK+ ++L + +K + LDV++A Sbjct: 247 GSGKKRKFQPLF---GDFAAEKKNQLELLRVMNSK--KPQLDVTRA 287
>RW1_HUMAN (Q92545) RW1 protein (Fragment)| Length = 1805 Score = 33.9 bits (76), Expect = 0.39 Identities = 33/131 (25%), Positives = 52/131 (39%) Frame = +2 Query: 83 PLLKPN*QXEPGVDPFAQRKEEKKSRVDKQEKNSLGNLKNAAKVGALPSHIQLAATSVPI 262 PLLK + + + G ++ E + S+V KQ+ L N+K PS ++L T Sbjct: 1358 PLLKEDTEKQKGKQAMPEKHESEMSQV-KQKSKKLLNIKKEIPTDVKPSSLELPYTPPLE 1416 Query: 263 TGTKADLPRKAKKEDLENVXXXXXXXXXXXXKFDKKLPGEKPLKKAGKNRKFLPVVEGKG 442 + + +LP K + K KL +P A KFLP + Sbjct: 1417 SKQRRNLPSKIPLPTA--MTSGSKSRNAQKTKGTSKLVDNRPPALA----KFLP--NSQE 1468 Query: 443 MGNLEKQQNEK 475 +GN + EK Sbjct: 1469 LGNTSSSEGEK 1479
>CYLC1_HUMAN (P35663) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)| Length = 651 Score = 32.0 bits (71), Expect = 1.5 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Frame = +2 Query: 110 EPGVDPFAQRKEEKKSRVDKQEKNSLGNLKNAAKVGALPSHIQLAAT---SVPITGTKAD 280 EP D +K+EKK + D ++ + + K A+ + S ++L S G+K D Sbjct: 449 EPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLELKKDKKHSKEKKGSKKD 508 Query: 281 LPRKAKKEDLENVXXXXXXXXXXXXKFDKKLPG-----EKPLKKAGKNRK 415 + + A+K D E+ K K+ G E+ L K G +K Sbjct: 509 IKKDARK-DTESTDAEFDESSKTGFKTSTKIKGSDTESEESLYKPGAKKK 557
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +3 Query: 162 SINKKRTVLGI*RMLQKLVLCQVIYSSLPRPCPSQELKLICQEKLRRKTSRMSLVWLLQQ 341 ++ K T+ G+ + QKL L Q+ S P P P ++ L Q+ LR + +R+ L Sbjct: 467 AVRKVHTIRGL--IAQKLALAQLRQESCPLPPPVTDVSLELQQ-LREERNRLDAELQLSA 523 Query: 342 RLVVESL 362 RL+ + + Sbjct: 524 RLIQQEV 530
>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)| Length = 614 Score = 30.4 bits (67), Expect = 4.3 Identities = 25/92 (27%), Positives = 37/92 (40%) Frame = +2 Query: 134 QRKEEKKSRVDKQEKNSLGNLKNAAKVGALPSHIQLAATSVPITGTKADLPRKAKKEDLE 313 +RK++KK + DK+EK + K P+ S+P + +K KKE Sbjct: 37 ERKKDKKEKKDKKEKKDKKSKKEKKDQDESPATESTEDVSMPDAAAEPVADKKEKKE--- 93 Query: 314 NVXXXXXXXXXXXXKFDKKLPGEKPLKKAGKN 409 K DKK +K KKA K+ Sbjct: 94 --------------KKDKKEKKDKKEKKAKKS 111
>REHY_TORRU (P52574) Probable peroxiredoxin (EC 1.11.1.15) (Thioredoxin| peroxidase) (Rehydrin) Length = 218 Score = 30.4 bits (67), Expect = 4.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 516 NGSSKFLASRLFRIFSFCCFSRLPIPFPSTTGRNF 412 + + K LASR I C +L + +P TTGRNF Sbjct: 120 DANGKPLASRALHIIGPDCRLKLSLLYPGTTGRNF 154
>GYRB_CLOAB (P94604) DNA gyrase subunit B (EC 5.99.1.3)| Length = 637 Score = 30.0 bits (66), Expect = 5.6 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Frame = +2 Query: 395 KAGKNRKFLPVVEGKG-MGNLEKQQNEKILNS 487 K G+NR+F ++ +G + N+EKQ+ +KILNS Sbjct: 435 KQGRNRRFQAILPLRGKIMNVEKQRIDKILNS 466
>TRDN_CANFA (P82179) Triadin| Length = 700 Score = 30.0 bits (66), Expect = 5.6 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +2 Query: 92 KPN*QXEPGVDPFAQRKEEK--KSRVDKQEKNSLGNLKNAAKVGALPSHIQLAATSVPIT 265 KP + P V ++K EK K +K E L K + + +L SH Sbjct: 567 KPTSKETPEVTESGKKKIEKSEKESKEKAEMKHLKEEKVSTRKESLQSH----------N 616 Query: 266 GTKADLPRKAKKEDLENV 319 TKA+ P + +EDLE+V Sbjct: 617 VTKAEKPARVSREDLEDV 634
>CARD_PECCC (Q9XB58) Carbapenem antibiotics biosynthesis protein carD| Length = 376 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = -3 Query: 254 RTWQRAVYDLAEH---QLLQHSSNSQDCSFLVYRPCSSSLPFFEQKDQHQA 111 RTW +Y L +H LLQ + + C +L Y P SLP+ ++ + A Sbjct: 303 RTWVGQLYGLGDHITYSLLQ--TGFRVCKYLPYGPLDKSLPYLLRRIEENA 351
>PTRF_HUMAN (Q6NZI2) Polymerase I and transcript release factor (PTRF protein)| Length = 390 Score = 29.6 bits (65), Expect = 7.3 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 13/143 (9%) Frame = +2 Query: 143 EEKKSRVDKQEKNSLGNLKNAAKVGALPSHI------QLAATSVPITGTKADLPRKA--- 295 EE+++ ++ ++ G L K A S+ ++ SV + + L R+A Sbjct: 76 EERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVNVKTVRGSLERQAGQI 135 Query: 296 -KKEDLENVXXXXXXXXXXXXKFDKKLPGEKPLKKAGKNRKFLPVVEGKGMGNLEKQQNE 472 K E E + + KLP + + K+ K + LP EG+ +G E+ + + Sbjct: 136 KKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPEKEGEELGEGERPEED 195 Query: 473 KI---LNSLLAKNFEEPLDVSKA 532 L+S A EE ++ S+A Sbjct: 196 AAALELSSDEAVEVEEVIEESRA 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,881,211 Number of Sequences: 219361 Number of extensions: 1489727 Number of successful extensions: 4466 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4325 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4459 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
