ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6n15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_506701.1| PREDICTED Oryza sativa (japonica cultivar-group... 74 3e-11
2ref|XM_463977.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-11
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-11
4dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-11
5dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-11
6dbj|AK099092.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-11
7dbj|AK060422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-11
8ref|XM_463976.1| Oryza sativa (japonica cultivar-group), mRNA 50 4e-04
9gb|BT012838.1| Lycopersicon esculentum clone 113904R, mRNA sequence 40 0.35
10gb|AC132108.4| Mus musculus BAC clone RP24-257B11 from chromosom... 38 1.4
11gb|AC134454.4| Mus musculus BAC clone RP24-286K15 from 3, comple... 38 1.4
12ref|NM_202086.1| Arabidopsis thaliana MAP1C (METHIONINE AMINOPEP... 36 5.5
13ref|NM_101198.2| Arabidopsis thaliana MAP1C (METHIONINE AMINOPEP... 36 5.5
14gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O1... 36 5.5
15gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 36 5.5
16gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosom... 36 5.5
17ref|XM_818507.1| Trypanosoma brucei TREU927 clone RPCI93-12O16 u... 36 5.5
18gb|AC123811.3| Mus musculus BAC clone RP24-179L19 from chromosom... 36 5.5
19gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosom... 36 5.5
20gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosom... 36 5.5
21gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complet... 36 5.5
22emb|AL445440.9| Human DNA sequence from clone RP11-185G1 on chro... 36 5.5
23gb|BT000449.1| Arabidopsis thaliana methionine aminopeptidase I ... 36 5.5
24gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, comple... 36 5.5
25gb|AY033509.1| Spironucleus barkhanus CPN60 (cpn60) gene, comple... 36 5.5
26dbj|AK088261.1| Mus musculus 2 days neonate thymus thymic cells ... 36 5.5
27emb|BX816274.1|CNS0ABL0 Arabidopsis thaliana Full-length cDNA Co... 36 5.5
28emb|BX816960.1|CNS0ABRM Arabidopsis thaliana Full-length cDNA Co... 36 5.5
29gb|AC008895.7| Homo sapiens chromosome 19 clone CTD-2233K9, comp... 36 5.5
30gb|AC141889.4| Mus musculus BAC clone RP23-434P15 from chromosom... 36 5.5
31gb|AF250961.1|AF250961 Arabidopsis thaliana methionine aminopept... 36 5.5
32gb|AC078809.9| Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cance... 36 5.5
33gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J... 36 5.5
34gb|AE001272.1|AE001272 Lactococcus lactis DPC3147 plasmid pMRC01... 36 5.5
35gb|AC132103.3| Mus musculus BAC clone RP24-363K20 from 9, comple... 36 5.5
36emb|AL807820.4| Mouse DNA sequence from clone RP23-418L18 on chr... 36 5.5
37gb|BT001213.1| Arabidopsis thaliana methionine aminopeptidase I ... 36 5.5

>ref|XM_506701.1| PREDICTED Oryza sativa (japonica cultivar-group), P0482F12.28-1
           mRNA
          Length = 1448

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 1   caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45
           ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 567 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 611



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>ref|XM_463977.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1445

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 1   caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45
           ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 556 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 600



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                            
Query: 1       caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45
               ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1439382 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 1439338



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>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0482F12
          Length = 147735

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                           
Query: 1      caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45
              ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 120654 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 120610



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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0576F08
          Length = 135314

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                         
Query: 1    caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45
            ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 2803 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 2759



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>dbj|AK099092.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H14, full
           insert sequence
          Length = 1446

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 1   caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45
           ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 556 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 600



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>dbj|AK060422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-G07, full
           insert sequence
          Length = 1448

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 1   caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45
           ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 567 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 611



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>ref|XM_463976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1412

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 1   caaaacttgtagctaatatgattac 25
           |||||||||||||||||||||||||
Sbjct: 624 caaaacttgtagctaatatgattac 648



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>gb|BT012838.1| Lycopersicon esculentum clone 113904R, mRNA sequence
          Length = 1542

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 3   aaacttgtagctaatatgattactgaagctggtgca 38
           ||||||||||| ||| |||| || ||||||||||||
Sbjct: 611 aaacttgtagcaaatctgataacagaagctggtgca 646



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>gb|AC132108.4| Mus musculus BAC clone RP24-257B11 from chromosome 3, complete sequence
          Length = 162109

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      aaacttgtagctaatatga 21
              |||||||||||||||||||
Sbjct: 162058 aaacttgtagctaatatga 162040



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>gb|AC134454.4| Mus musculus BAC clone RP24-286K15 from 3, complete sequence
          Length = 160740

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      aaacttgtagctaatatga 21
              |||||||||||||||||||
Sbjct: 150418 aaacttgtagctaatatga 150436



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>ref|NM_202086.1| Arabidopsis thaliana MAP1C (METHIONINE AMINOPEPTIDASE 1B);
           metalloexopeptidase AT1G13270 (MAP1C) transcript variant
           AT1G13270.2 mRNA, complete cds
          Length = 1399

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  atatgattactgaagctggtgc 37
           ||||||||| ||||||||||||
Sbjct: 546 atatgattattgaagctggtgc 567



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>ref|NM_101198.2| Arabidopsis thaliana MAP1C (METHIONINE AMINOPEPTIDASE 1B);
           metalloexopeptidase AT1G13270 (MAP1C) transcript variant
           AT1G13270.1 mRNA, complete cds
          Length = 1309

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  atatgattactgaagctggtgc 37
           ||||||||| ||||||||||||
Sbjct: 546 atatgattattgaagctggtgc 567



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>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence
          Length = 161249

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     attactgaagctggtgca 38
              ||||||||||||||||||
Sbjct: 147195 attactgaagctggtgca 147178



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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     attactgaagctggtgca 38
              ||||||||||||||||||
Sbjct: 285915 attactgaagctggtgca 285898



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>gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosome 3, complete sequence
          Length = 230133

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    tactgaagctggtgcaaa 40
             ||||||||||||||||||
Sbjct: 57053 tactgaagctggtgcaaa 57070



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>ref|XM_818507.1| Trypanosoma brucei TREU927 clone RPCI93-12O16 ubiquitin-conjugating
           enzyme E2 (Tb927.8.920) partial mRNA
          Length = 519

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 21  attactgaagctggtgca 38
           ||||||||||||||||||
Sbjct: 478 attactgaagctggtgca 495



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>gb|AC123811.3| Mus musculus BAC clone RP24-179L19 from chromosome 9, complete sequence
          Length = 204171

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 25     ctgaagctggtgcaaacc 42
              ||||||||||||||||||
Sbjct: 180607 ctgaagctggtgcaaacc 180624



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>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence
          Length = 195587

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    gctaatatgattactgaa 29
             ||||||||||||||||||
Sbjct: 50930 gctaatatgattactgaa 50947



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>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete
            sequence
          Length = 183428

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   tagctaatatgattactg 27
            ||||||||||||||||||
Sbjct: 9027 tagctaatatgattactg 9044



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>gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complete sequence
          Length = 214280

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     tagctaatatgattactg 27
              ||||||||||||||||||
Sbjct: 133064 tagctaatatgattactg 133081



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>emb|AL445440.9| Human DNA sequence from clone RP11-185G1 on chromosome 9, complete
             sequence
          Length = 165833

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     aaaacttgtagctaatat 19
             ||||||||||||||||||
Sbjct: 62117 aaaacttgtagctaatat 62100



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>gb|BT000449.1| Arabidopsis thaliana methionine aminopeptidase I (MAP1), putative
           (At1g13270) mRNA, complete cds
          Length = 1295

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  atatgattactgaagctggtgc 37
           ||||||||| ||||||||||||
Sbjct: 546 atatgattattgaagctggtgc 567



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>gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, complete sequence
          Length = 147777

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     atgattactgaagctggt 35
              ||||||||||||||||||
Sbjct: 112958 atgattactgaagctggt 112941



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>gb|AY033509.1| Spironucleus barkhanus CPN60 (cpn60) gene, complete cds
          Length = 1539

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 11  agctaatatgattactgaagct 32
           ||||||||||||| ||||||||
Sbjct: 486 agctaatatgatttctgaagct 507



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>dbj|AK088261.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430008L24
            product:unclassifiable, full insert sequence
          Length = 2087

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 25   ctgaagctggtgcaaacc 42
            ||||||||||||||||||
Sbjct: 1946 ctgaagctggtgcaaacc 1929



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>emb|BX816274.1|CNS0ABL0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH38ZH09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1235

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  atatgattactgaagctggtgc 37
           ||||||||| ||||||||||||
Sbjct: 534 atatgattattgaagctggtgc 555



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>emb|BX816960.1|CNS0ABRM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH78ZG08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1348

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  atatgattactgaagctggtgc 37
           ||||||||| ||||||||||||
Sbjct: 532 atatgattattgaagctggtgc 553



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>gb|AC008895.7| Homo sapiens chromosome 19 clone CTD-2233K9, complete sequence
          Length = 146008

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    tagctaatatgattactg 27
             ||||||||||||||||||
Sbjct: 53433 tagctaatatgattactg 53416



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>gb|AC141889.4| Mus musculus BAC clone RP23-434P15 from chromosome 3, complete sequence
          Length = 186264

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     tactgaagctggtgcaaa 40
              ||||||||||||||||||
Sbjct: 123645 tactgaagctggtgcaaa 123662



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>gb|AF250961.1|AF250961 Arabidopsis thaliana methionine aminopeptidase-like protein mRNA,
           complete cds
          Length = 1293

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  atatgattactgaagctggtgc 37
           ||||||||| ||||||||||||
Sbjct: 529 atatgattattgaagctggtgc 550



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>gb|AC078809.9| Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162646

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      aaaacttgtagctaatat 19
              ||||||||||||||||||
Sbjct: 147907 aaaacttgtagctaatat 147890



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>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete
             sequence
          Length = 103157

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 16    atatgattactgaagctggtgc 37
             ||||||||| ||||||||||||
Sbjct: 24003 atatgattattgaagctggtgc 24024



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>gb|AE001272.1|AE001272 Lactococcus lactis DPC3147 plasmid pMRC01, complete plasmid sequence
          Length = 60232

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     ttgtagctaatatgatta 24
             ||||||||||||||||||
Sbjct: 54781 ttgtagctaatatgatta 54798



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>gb|AC132103.3| Mus musculus BAC clone RP24-363K20 from 9, complete sequence
          Length = 192053

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 25     ctgaagctggtgcaaacc 42
              ||||||||||||||||||
Sbjct: 101293 ctgaagctggtgcaaacc 101310



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>emb|AL807820.4| Mouse DNA sequence from clone RP23-418L18 on chromosome X, complete
              sequence
          Length = 150030

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      tgtagctaatatgattac 25
              ||||||||||||||||||
Sbjct: 101714 tgtagctaatatgattac 101731



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>gb|BT001213.1| Arabidopsis thaliana methionine aminopeptidase I (MAP1), putative
           (At1g13270) mRNA, complete cds
          Length = 1167

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 16  atatgattactgaagctggtgc 37
           ||||||||| ||||||||||||
Sbjct: 503 atatgattattgaagctggtgc 524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 289,834
Number of Sequences: 3902068
Number of extensions: 289834
Number of successful extensions: 75900
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75820
Number of HSP's gapped (non-prelim): 80
length of query: 45
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 25
effective length of database: 17,155,003,908
effective search space: 428875097700
effective search space used: 428875097700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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