| Clone Name | bags6n15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506701.1| PREDICTED Oryza sativa (japonica cultivar-group), P0482F12.28-1 mRNA Length = 1448 Score = 73.8 bits (37), Expect = 3e-11 Identities = 43/45 (95%) Strand = Plus / Plus Query: 1 caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 567 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 611
>ref|XM_463977.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1445 Score = 73.8 bits (37), Expect = 3e-11 Identities = 43/45 (95%) Strand = Plus / Plus Query: 1 caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 556 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 600
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 3e-11 Identities = 43/45 (95%) Strand = Plus / Minus Query: 1 caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1439382 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 1439338
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 73.8 bits (37), Expect = 3e-11 Identities = 43/45 (95%) Strand = Plus / Minus Query: 1 caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 120654 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 120610
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 73.8 bits (37), Expect = 3e-11 Identities = 43/45 (95%) Strand = Plus / Minus Query: 1 caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 2803 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 2759
>dbj|AK099092.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H14, full insert sequence Length = 1446 Score = 73.8 bits (37), Expect = 3e-11 Identities = 43/45 (95%) Strand = Plus / Plus Query: 1 caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 556 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 600
>dbj|AK060422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-G07, full insert sequence Length = 1448 Score = 73.8 bits (37), Expect = 3e-11 Identities = 43/45 (95%) Strand = Plus / Plus Query: 1 caaaacttgtagctaatatgattactgaagctggtgcaaaccgtg 45 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 567 caaaacttgtagctaatatgattacagaagctggtgcgaaccgtg 611
>ref|XM_463976.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1412 Score = 50.1 bits (25), Expect = 4e-04 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1 caaaacttgtagctaatatgattac 25 ||||||||||||||||||||||||| Sbjct: 624 caaaacttgtagctaatatgattac 648
>gb|BT012838.1| Lycopersicon esculentum clone 113904R, mRNA sequence Length = 1542 Score = 40.1 bits (20), Expect = 0.35 Identities = 32/36 (88%) Strand = Plus / Plus Query: 3 aaacttgtagctaatatgattactgaagctggtgca 38 ||||||||||| ||| |||| || |||||||||||| Sbjct: 611 aaacttgtagcaaatctgataacagaagctggtgca 646
>gb|AC132108.4| Mus musculus BAC clone RP24-257B11 from chromosome 3, complete sequence Length = 162109 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaacttgtagctaatatga 21 ||||||||||||||||||| Sbjct: 162058 aaacttgtagctaatatga 162040
>gb|AC134454.4| Mus musculus BAC clone RP24-286K15 from 3, complete sequence Length = 160740 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaacttgtagctaatatga 21 ||||||||||||||||||| Sbjct: 150418 aaacttgtagctaatatga 150436
>ref|NM_202086.1| Arabidopsis thaliana MAP1C (METHIONINE AMINOPEPTIDASE 1B); metalloexopeptidase AT1G13270 (MAP1C) transcript variant AT1G13270.2 mRNA, complete cds Length = 1399 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 546 atatgattattgaagctggtgc 567
>ref|NM_101198.2| Arabidopsis thaliana MAP1C (METHIONINE AMINOPEPTIDASE 1B); metalloexopeptidase AT1G13270 (MAP1C) transcript variant AT1G13270.1 mRNA, complete cds Length = 1309 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 546 atatgattattgaagctggtgc 567
>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence Length = 161249 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 attactgaagctggtgca 38 |||||||||||||||||| Sbjct: 147195 attactgaagctggtgca 147178
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 attactgaagctggtgca 38 |||||||||||||||||| Sbjct: 285915 attactgaagctggtgca 285898
>gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosome 3, complete sequence Length = 230133 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 tactgaagctggtgcaaa 40 |||||||||||||||||| Sbjct: 57053 tactgaagctggtgcaaa 57070
>ref|XM_818507.1| Trypanosoma brucei TREU927 clone RPCI93-12O16 ubiquitin-conjugating enzyme E2 (Tb927.8.920) partial mRNA Length = 519 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 attactgaagctggtgca 38 |||||||||||||||||| Sbjct: 478 attactgaagctggtgca 495
>gb|AC123811.3| Mus musculus BAC clone RP24-179L19 from chromosome 9, complete sequence Length = 204171 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 ctgaagctggtgcaaacc 42 |||||||||||||||||| Sbjct: 180607 ctgaagctggtgcaaacc 180624
>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence Length = 195587 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 gctaatatgattactgaa 29 |||||||||||||||||| Sbjct: 50930 gctaatatgattactgaa 50947
>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence Length = 183428 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 tagctaatatgattactg 27 |||||||||||||||||| Sbjct: 9027 tagctaatatgattactg 9044
>gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complete sequence Length = 214280 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 tagctaatatgattactg 27 |||||||||||||||||| Sbjct: 133064 tagctaatatgattactg 133081
>emb|AL445440.9| Human DNA sequence from clone RP11-185G1 on chromosome 9, complete sequence Length = 165833 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaacttgtagctaatat 19 |||||||||||||||||| Sbjct: 62117 aaaacttgtagctaatat 62100
>gb|BT000449.1| Arabidopsis thaliana methionine aminopeptidase I (MAP1), putative (At1g13270) mRNA, complete cds Length = 1295 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 546 atatgattattgaagctggtgc 567
>gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, complete sequence Length = 147777 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 atgattactgaagctggt 35 |||||||||||||||||| Sbjct: 112958 atgattactgaagctggt 112941
>gb|AY033509.1| Spironucleus barkhanus CPN60 (cpn60) gene, complete cds Length = 1539 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 11 agctaatatgattactgaagct 32 ||||||||||||| |||||||| Sbjct: 486 agctaatatgatttctgaagct 507
>dbj|AK088261.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430008L24 product:unclassifiable, full insert sequence Length = 2087 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 ctgaagctggtgcaaacc 42 |||||||||||||||||| Sbjct: 1946 ctgaagctggtgcaaacc 1929
>emb|BX816274.1|CNS0ABL0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH38ZH09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1235 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 534 atatgattattgaagctggtgc 555
>emb|BX816960.1|CNS0ABRM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH78ZG08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1348 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 532 atatgattattgaagctggtgc 553
>gb|AC008895.7| Homo sapiens chromosome 19 clone CTD-2233K9, complete sequence Length = 146008 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 tagctaatatgattactg 27 |||||||||||||||||| Sbjct: 53433 tagctaatatgattactg 53416
>gb|AC141889.4| Mus musculus BAC clone RP23-434P15 from chromosome 3, complete sequence Length = 186264 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 tactgaagctggtgcaaa 40 |||||||||||||||||| Sbjct: 123645 tactgaagctggtgcaaa 123662
>gb|AF250961.1|AF250961 Arabidopsis thaliana methionine aminopeptidase-like protein mRNA, complete cds Length = 1293 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 529 atatgattattgaagctggtgc 550
>gb|AC078809.9| Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162646 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 aaaacttgtagctaatat 19 |||||||||||||||||| Sbjct: 147907 aaaacttgtagctaatat 147890
>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence Length = 103157 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 24003 atatgattattgaagctggtgc 24024
>gb|AE001272.1|AE001272 Lactococcus lactis DPC3147 plasmid pMRC01, complete plasmid sequence Length = 60232 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 ttgtagctaatatgatta 24 |||||||||||||||||| Sbjct: 54781 ttgtagctaatatgatta 54798
>gb|AC132103.3| Mus musculus BAC clone RP24-363K20 from 9, complete sequence Length = 192053 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 ctgaagctggtgcaaacc 42 |||||||||||||||||| Sbjct: 101293 ctgaagctggtgcaaacc 101310
>emb|AL807820.4| Mouse DNA sequence from clone RP23-418L18 on chromosome X, complete sequence Length = 150030 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 tgtagctaatatgattac 25 |||||||||||||||||| Sbjct: 101714 tgtagctaatatgattac 101731
>gb|BT001213.1| Arabidopsis thaliana methionine aminopeptidase I (MAP1), putative (At1g13270) mRNA, complete cds Length = 1167 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 16 atatgattactgaagctggtgc 37 ||||||||| |||||||||||| Sbjct: 503 atatgattattgaagctggtgc 524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 289,834 Number of Sequences: 3902068 Number of extensions: 289834 Number of successful extensions: 75900 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75820 Number of HSP's gapped (non-prelim): 80 length of query: 45 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 25 effective length of database: 17,155,003,908 effective search space: 428875097700 effective search space used: 428875097700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)