ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7c02 |
|---|---|
| Clone Library Name | barley_pub |
>DRP1C_ARATH (Q8LF21) Dynamin-related protein 1C (Dynamin-like protein C)| (Dynamin-like protein 5) (Dynamin-like protein DLP1) Length = 614 Score = 286 bits (731), Expect = 3e-77 Identities = 144/181 (79%), Positives = 161/181 (88%), Gaps = 4/181 (2%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RIYGVFDHQLPAALKKLPFD+HLS +NV+KV+SEADGYQPHLIAPEQGYRRLID S+SYF Sbjct: 360 RIYGVFDHQLPAALKKLPFDRHLSTKNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYF 419 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 +GPAEA+VDAVH VLKELVR+SI+ TEELKRFPTL SDIAAAANE+LERFR++ RKTV+R Sbjct: 420 KGPAEATVDAVHFVLKELVRKSISETEELKRFPTLASDIAAAANEALERFRDESRKTVLR 479 Query: 377 LVDMEASYLTVEFFRKLPTEPDKGANN--NTPA--NDRYQDNHLRRIGSNVSSYINMVCD 544 LVDME+SYLTVEFFRKL EP+K N N PA D Y DNH R+IGSNVS+YINMVCD Sbjct: 480 LVDMESSYLTVEFFRKLHLEPEKEKPNPRNAPAPNADPYSDNHFRKIGSNVSAYINMVCD 539 Query: 545 T 547 T Sbjct: 540 T 540
>DRP1E_ARATH (Q9FNX5) Dynamin-related protein 1E (Dynamin-like protein E)| (Dynamin-like protein 4) (Dynamin-like protein DLP2) Length = 624 Score = 263 bits (672), Expect = 2e-70 Identities = 131/185 (70%), Positives = 159/185 (85%), Gaps = 8/185 (4%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RIYGVFD+QLPAALKKLPFD+HLSLQ+V+K++SEADGYQPHLIAPEQGYRRLI+ +L YF Sbjct: 365 RIYGVFDNQLPAALKKLPFDRHLSLQSVKKIVSEADGYQPHLIAPEQGYRRLIEGALGYF 424 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 RGPAEASVDAVH VLKELVR+SI+ TEELKRFP+LQ ++AAAAN SLE+FRE+ +K+VIR Sbjct: 425 RGPAEASVDAVHYVLKELVRKSISETEELKRFPSLQVELAAAANSSLEKFREESKKSVIR 484 Query: 377 LVDMEASYLTVEFFRKLPTEPDKGANNN-----TPAN---DRYQDNHLRRIGSNVSSYIN 532 LVDME++YLT EFFRKLP E ++ N+ +P++ D+Y D H RRI SNVS+Y+N Sbjct: 485 LVDMESAYLTAEFFRKLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVN 544 Query: 533 MVCDT 547 MV DT Sbjct: 545 MVSDT 549
>DRP1D_ARATH (Q8S3C9) Dynamin-related protein 1D (Dynamin-like protein D)| (Dynamin-like protein DLP3) Length = 612 Score = 243 bits (620), Expect = 3e-64 Identities = 116/178 (65%), Positives = 152/178 (85%), Gaps = 1/178 (0%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RIYG+FD+ LP A+KKLPFD+HLSLQ+V++++SE+DGYQPHLIAPE GYRRLI+ SL++F Sbjct: 360 RIYGIFDYNLPTAIKKLPFDRHLSLQSVKRIVSESDGYQPHLIAPELGYRRLIEGSLNHF 419 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 RGPAEASV+A+HL+LKELVR++IA TEELKRFP+LQ ++ AAAN SL++FRE+ K+V+R Sbjct: 420 RGPAEASVNAIHLILKELVRKAIAETEELKRFPSLQIELVAAANSSLDKFREESMKSVLR 479 Query: 377 LVDMEASYLTVEFFRKLPTE-PDKGANNNTPANDRYQDNHLRRIGSNVSSYINMVCDT 547 LVDME+SYLTV+FFRKL E + ++ T A D+Y D H R+I SNV++YI MV +T Sbjct: 480 LVDMESSYLTVDFFRKLHVESQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAET 537
>DRP1B_ARATH (Q84XF3) Dynamin-related protein 1B (Dynamin-like protein B)| Length = 610 Score = 230 bits (586), Expect = 2e-60 Identities = 110/175 (62%), Positives = 140/175 (80%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 +I VFD+Q PAA+K+L FDKHLS+ NVRK+I+EADGYQPHLIAPEQGYRRLI+S L Sbjct: 359 KINSVFDNQFPAAIKRLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVSI 418 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 RGPAEA+VDAVH +LK+L+ +S+ T ELK++PTL+ +++ AA +SL+R R++ RK + Sbjct: 419 RGPAEAAVDAVHSILKDLIHKSMGETSELKQYPTLRVEVSGAAVDSLDRMRDESRKATLL 478 Query: 377 LVDMEASYLTVEFFRKLPTEPDKGANNNTPANDRYQDNHLRRIGSNVSSYINMVC 541 LVDME+ YLTVEFFRKLP + +KG N DRY D +LRRIGSNV SY+NMVC Sbjct: 479 LVDMESGYLTVEFFRKLPQDSEKGGNPTHSIFDRYNDAYLRRIGSNVLSYVNMVC 533
>DRP1A_ARATH (P42697) Dynamin-related protein 1A (Dynamin-like protein A)| (Dynamin-like protein 1) Length = 610 Score = 229 bits (583), Expect = 5e-60 Identities = 108/175 (61%), Positives = 140/175 (80%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 ++Y VFD+QLPAALK+L FDK L++ N+RK+++EADGYQPHLIAPEQGYRRLI+SS+ Sbjct: 359 KVYNVFDNQLPAALKRLQFDKQLAMDNIRKLVTEADGYQPHLIAPEQGYRRLIESSIVSI 418 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 RGPAEASVD VH +LK+LV +S+ T ELK++P L+ ++ AA ESL++ RE +K ++ Sbjct: 419 RGPAEASVDTVHAILKDLVHKSVNETVELKQYPALRVEVTNAAIESLDKMREGSKKATLQ 478 Query: 377 LVDMEASYLTVEFFRKLPTEPDKGANNNTPANDRYQDNHLRRIGSNVSSYINMVC 541 LVDME SYLTV+FFRKLP + +KG N DRY D++LRRIGSNV SY+NMVC Sbjct: 479 LVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGSNVLSYVNMVC 533
>DRP2B_ARATH (Q9LQ55) Dynamin-2B (EC 3.6.5.5) (Dynamin-related protein 2B)| (Dynamin-like protein 3) Length = 920 Score = 116 bits (291), Expect = 4e-26 Identities = 55/137 (40%), Positives = 87/137 (63%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 ++ F+ P +KKLP D+H L NV++++ EADGYQP+LI+PE+G R LI + L Sbjct: 362 KVVASFEGNFPNRIKKLPLDRHFDLNNVKRIVLEADGYQPYLISPEKGLRSLIKTVLELA 421 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + PA VD VH VL ++V S AT L R+P + ++ A A+ +L+ F+ + +K V+ Sbjct: 422 KDPARLCVDEVHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVA 481 Query: 377 LVDMEASYLTVEFFRKL 427 LVDME +++ + F +L Sbjct: 482 LVDMERAFVPPQHFIRL 498
>DRP2A_ARATH (Q9SE83) Dynamin-2A (EC 3.6.5.5) (Dynamin-related protein 2A)| (Dynamin-like protein 6) Length = 914 Score = 114 bits (285), Expect = 2e-25 Identities = 55/137 (40%), Positives = 86/137 (62%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 ++ F+ P +K+LP D+H L NV++V+ EADGYQP+LI+PE+G R LI L Sbjct: 362 KVVASFEGNFPNRIKQLPLDRHFDLNNVKRVVLEADGYQPYLISPEKGLRSLIKIVLELA 421 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + PA VD VH VL ++V S AT L R+P + ++ A A+ +L+ F+ + +K V+ Sbjct: 422 KDPARLCVDEVHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVA 481 Query: 377 LVDMEASYLTVEFFRKL 427 LVDME +++ + F +L Sbjct: 482 LVDMERAFVPPQHFIRL 498
>DNM1_YEAST (P54861) Dynamin-related protein DNM1 (EC 3.6.5.5)| Length = 757 Score = 53.9 bits (128), Expect = 3e-07 Identities = 34/129 (26%), Positives = 65/129 (50%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RIY ++++ +LK + +LS+ +VR I + G +P L PE + L+ + Sbjct: 400 RIYYIYNNVFGNSLKSIDPTSNLSVLDVRTAIRNSTGPRPTLFVPELAFDLLVKPQIKLL 459 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 P++ V+ V+ L ++ + +A EL R+P L+S + +E L + R V Sbjct: 460 LEPSQRCVELVYEELMKICHKCGSA--ELARYPKLKSMLIEVISELLRERLQPTRSYVES 517 Query: 377 LVDMEASYL 403 L+D+ +Y+ Sbjct: 518 LIDIHRAYI 526
>DYN3_HUMAN (Q9UQ16) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)| Length = 859 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/129 (21%), Positives = 58/129 (44%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 +I +F + P + K+ F++ + + I G + L P+ + ++ + Sbjct: 361 KINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKL 420 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 +GP+ SVD LV++EL+ T++L FP L + + + V+ Sbjct: 421 KGPSLKSVD---LVIQELINTVKKCTKKLANFPRLCEETERIVANHIREREGKTKDQVLL 477 Query: 377 LVDMEASYL 403 L+D++ SY+ Sbjct: 478 LIDIQVSYI 486
>DYN3_RAT (Q08877) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)| Length = 848 Score = 49.3 bits (116), Expect = 7e-06 Identities = 28/129 (21%), Positives = 57/129 (44%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 +I +F + P + K+ F++ + + I G + L P+ + ++ + Sbjct: 361 KINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKL 420 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 +GP+ SVD LV++EL+ T+ L FP L + + + V+ Sbjct: 421 KGPSLKSVD---LVMQELINTVKKCTKRLANFPRLCEETERIVANHIREREGKTKDQVLL 477 Query: 377 LVDMEASYL 403 L+D++ SY+ Sbjct: 478 LIDIQVSYI 486
>DYN2_HUMAN (P50570) Dynamin-2 (EC 3.6.5.5)| Length = 870 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/129 (21%), Positives = 55/129 (42%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F + P L K+ FD+ + + I G + L P+ + ++ + Sbjct: 361 RINRIFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGLFTPDLAFEAIVKKQVVKL 420 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + P VD LV++EL+ T +L +P L+ + + + ++ Sbjct: 421 KEPCLKCVD---LVIQELINTVRQCTSKLSSYPRLREETERIVTTYIREREGRTKDQILL 477 Query: 377 LVDMEASYL 403 L+D+E SY+ Sbjct: 478 LIDIEQSYI 486
>DYN2_RAT (P39052) Dynamin-2 (EC 3.6.5.5)| Length = 870 Score = 46.2 bits (108), Expect = 6e-05 Identities = 28/129 (21%), Positives = 55/129 (42%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F + P L K+ FD+ + + I G + L P+ + ++ + Sbjct: 361 RINRIFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGLFTPDLAFEAIVKKQVVKL 420 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + P VD LV++EL+ T +L +P L+ + + + ++ Sbjct: 421 KEPCLKCVD---LVIQELISTVRQCTSKLSSYPRLREETERIVTTYIREREGRTKDQILL 477 Query: 377 LVDMEASYL 403 L+D+E SY+ Sbjct: 478 LIDIEQSYI 486
>DYN2_MOUSE (P39054) Dynamin-2 (EC 3.6.5.5) (Dynamin UDNM)| Length = 870 Score = 46.2 bits (108), Expect = 6e-05 Identities = 28/129 (21%), Positives = 55/129 (42%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F + P L K+ FD+ + + I G + L P+ + ++ + Sbjct: 361 RINRIFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGLFTPDLAFEAIVKKQVVKL 420 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + P VD LV++EL+ T +L +P L+ + + + ++ Sbjct: 421 KEPCLKCVD---LVIQELISTVRQCTSKLSSYPRLREETERIVTTYIREREGRTKDQILL 477 Query: 377 LVDMEASYL 403 L+D+E SY+ Sbjct: 478 LIDIEQSYI 486
>DNM1L_BRARE (Q7SXN5) Dynamin-1-like protein (EC 3.6.5.5)| Length = 691 Score = 43.5 bits (101), Expect = 4e-04 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 2/169 (1%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F L+ + L+ +V I A G +P L PE + L+ + Sbjct: 364 RICYIFHETFGRTLESVDPLGGLTTIDVLTAIRNATGPRPALFVPEVSFELLVKRQVKRL 423 Query: 197 RGPAEASVDAVHLVLKELVRR-SIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVI 373 P+ V+ VH ++ +++ S +T+EL RFP L I L + + V Sbjct: 424 EEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTSLLRKRLPVTNEMVH 483 Query: 374 RLVDMEASYLTVEFFRKLPTEPDK-GANNNTPANDRYQDNHLRRIGSNV 517 LV +E +Y+ K P D G NN R N +R + ++V Sbjct: 484 NLVAIELAYINT----KHPDFADACGLMNNNIEEQR--RNRMRELPTSV 526
>DRP3B_ARATH (Q8LFT2) Dynamin-related protein 3B (Dynamin-like protein 2b)| Length = 780 Score = 42.7 bits (99), Expect = 7e-04 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F +L+++ + L+ ++R I A G + L P+ + L+ +S Sbjct: 381 RILYIFQSVFVKSLEEVDPCEDLTADDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRL 440 Query: 197 RGPAEASVDAVHLVLKELVRRSIAAT-EELKRFPTLQSDIAAAANESLERFREDGRKTVI 373 P S+ + ELV+ S +EL+RFP LQ + L E + + Sbjct: 441 LDP---SLQCARFIFDELVKISHQCMMKELQRFPVLQKRMDEVIGNFLREGLEPSQAMIR 497 Query: 374 RLVDMEASYL 403 L++ME Y+ Sbjct: 498 DLIEMEMDYI 507
>DNM1L_RAT (O35303) Dynamin-1-like protein (EC 3.6.5.5) (Dynamin-like protein)| Length = 755 Score = 42.4 bits (98), Expect = 9e-04 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 1/169 (0%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F L+ + L+ ++ I A G +P L PE + L+ + Sbjct: 378 RICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRL 437 Query: 197 RGPAEASVDAVHLVLKELVRR-SIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVI 373 P+ V+ VH ++ +++ S +T+EL RFP L I L + + V Sbjct: 438 EEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVH 497 Query: 374 RLVDMEASYLTVEFFRKLPTEPDKGANNNTPANDRYQDNHLRRIGSNVS 520 LV +E +Y+ K P D N ++ ++ R + S VS Sbjct: 498 NLVAIELAYINT----KHPDFADACGLMNNNIEEQRRNRLARELPSAVS 542
>DNM1L_HUMAN (O00429) Dynamin-1-like protein (EC 3.6.5.5) (Dynamin-like protein)| (Dnm1p/Vps1p-like protein) (DVLP) (Dynamin family member proline-rich carboxyl-terminal domain less) (Dymple) (Dynamin-related protein 1) (Dynamin-like protein 4) (Dynamin-li Length = 736 Score = 42.4 bits (98), Expect = 9e-04 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 1/169 (0%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F L+ + L+ ++ I A G +P L PE + L+ + Sbjct: 365 RICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRL 424 Query: 197 RGPAEASVDAVHLVLKELVRR-SIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVI 373 P+ V+ VH ++ +++ S +T+EL RFP L I L + + V Sbjct: 425 EEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVH 484 Query: 374 RLVDMEASYLTVEFFRKLPTEPDKGANNNTPANDRYQDNHLRRIGSNVS 520 LV +E +Y+ K P D N ++ ++ R + S VS Sbjct: 485 NLVAIELAYINT----KHPDFADACGLMNNNIEEQRRNRLARELPSAVS 529
>DRP3A_ARATH (Q8S944) Dynamin-related protein 3A (Dynamin-like protein 2)| (Dynamin-like protein 2a) Length = 808 Score = 41.6 bits (96), Expect = 0.001 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI+ +F +L+++ + L+ ++R I A G + L P+ + L+ +S Sbjct: 396 RIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRL 455 Query: 197 RGPAEASVDAVHLVLKELVRRSIAAT-EELKRFPTLQSDIAAAANESLERFREDGRKTVI 373 P S+ + +EL++ S EL+RFP L+ + + L E + Sbjct: 456 LDP---SLQCARFIFEELIKISHRCMMNELQRFPVLRKRMDEVIGDFLREGLEPSEAMIG 512 Query: 374 RLVDMEASYL 403 ++DME Y+ Sbjct: 513 DIIDMEMDYI 522
>DNM1L_MOUSE (Q8K1M6) Dynamin-1-like protein (EC 3.6.5.5) (Dynamin-related| protein 1) (Dynamin family member proline-rich carboxyl-terminal domain less) (Dymple) Length = 742 Score = 41.6 bits (96), Expect = 0.001 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F L+ + L+ ++ I A G +P L PE + L+ + Sbjct: 371 RICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRL 430 Query: 197 RGPAEASVDAVHLVLKELVRR-SIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVI 373 P+ V+ VH ++ +++ S +T+EL RFP L I L + + V Sbjct: 431 EEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVH 490 Query: 374 RLVDMEASYLTVE 412 LV +E +Y+ + Sbjct: 491 NLVAIELAYINTK 503
>DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)| Length = 830 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/129 (18%), Positives = 55/129 (42%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 RI +F + P + K+ D+ + ++ I G + L P+ + + ++ Sbjct: 364 RINRLFHERFPFEIVKMEIDEKEMRKEIQYAIRNIHGIRVGLFTPDMAFEAIAKKQITRL 423 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + P S+ V LV+ EL + + R+P L+ ++ + + ++ + Sbjct: 424 KEP---SLKCVDLVVNELANVIRQCADTMARYPRLRDELERIVVSHMREREQIAKQQIGL 480 Query: 377 LVDMEASYL 403 +VD E +Y+ Sbjct: 481 IVDYELAYM 489
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 40.4 bits (93), Expect = 0.003 Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 2/164 (1%) Frame = +2 Query: 17 RIYGVFDHQLPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYF 196 +I +F +L + K+ D+ + + I G + L P+ + ++ ++ Sbjct: 357 KINRIFHERLRFEIVKMACDEKELRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALL 416 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + P VD V L +VR T ++ R+P L+ + + + ++ ++ Sbjct: 417 KEPVIKCVDLVVQELSVVVRM---CTAKMSRYPRLREETERIITTHVRQREHSCKEQILL 473 Query: 377 LVDMEASYLTV--EFFRKLPTEPDKGANNNTPANDRYQDNHLRR 502 L+D E +Y+ E F +K N N + + +R+ Sbjct: 474 LIDFELAYMNTNHEDFIGFANAQNKSENANKTGTRQLGNQVIRK 517
>VPS1_SCHPO (Q9URZ5) Vacuolar sorting protein 1| Length = 678 Score = 33.5 bits (75), Expect = 0.41 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%) Frame = +2 Query: 68 PFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYFRGPAEASVDAVHLVLKE 247 PFD+ + ++R ++ + G P L + ++ + P S+ V L+ E Sbjct: 393 PFDE-VKDSDIRTILYNSSGPSPSLFMGTAAFEVIVKQQIKRLEDP---SLKCVSLIYDE 448 Query: 248 LVR--RSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIRLVDMEASYL 403 LVR + KR+P L+ + + + V+ +V ME SY+ Sbjct: 449 LVRILNQLLQRPIFKRYPLLKDEFYKVVIGFFRKCMQPTNTLVMDMVAMEGSYI 502
>CEF1_EMENI (Q5AW35) Pre-mRNA-splicing factor cef1| Length = 791 Score = 31.2 bits (69), Expect = 2.0 Identities = 26/104 (25%), Positives = 43/104 (41%) Frame = +2 Query: 44 LPAALKKLPFDKHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYFRGPAEASVD 223 LP L D+ + Q +++I D Q L+A + +L + L+ G + Sbjct: 652 LPGLSNYLDDDEEDAYQQEQRIIGVFDNVQASLLATAEDGNKL-EKKLALHYGGYQNRAK 710 Query: 224 AVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFRED 355 + + E + EL F TLQ AA + LE+ RE+ Sbjct: 711 MLRAKITEAHTALEKSKHELDAFRTLQISEEAAISRRLEKLREE 754
>SYFB_XYLFT (Q87AB6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +2 Query: 209 EASVDAV--HLVLKELVRRSIAATEELKRFPTLQSDIAAAANE 331 E +VD + L L+ LVRR++ L RFP ++ D+A E Sbjct: 671 EINVDVIAFELALEPLVRRALPRAHALSRFPFVRRDLACVVPE 713
>AP4E1_MOUSE (Q80V94) AP-4 complex subunit epsilon-1 (Adapter-related protein| complex 4 epsilon-1 subunit) (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit) Length = 1122 Score = 30.0 bits (66), Expect = 4.5 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 9/160 (5%) Frame = +2 Query: 86 SLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYFRGPAE-----ASVDAVHLVLKEL 250 +++NV + + D Q H+ + E+ ++L+ SSL GP D V + Sbjct: 737 TVENVDQATTRKDQAQGHIPSTEEKEKQLLASSLFVGLGPENTVDLLGKADVVSHKFRRK 796 Query: 251 VRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIRLVDMEASYLTVEFFRKL- 427 + +A +++ PT A + + EDG + VD L+ E FR Sbjct: 797 SKLKVAQSDKTPSAPTAPCS-ALSLGSDVAGGDEDG----LSAVDRGDGELSSELFRSES 851 Query: 428 ---PTEPDKGANNNTPANDRYQDNHLRRIGSNVSSYINMV 538 P +K + + P + DN++ SS + V Sbjct: 852 LSGPPSAEKLESVSLPVPSLFADNNMEVFNPPSSSATSTV 891
>PTLS_STRS3 (Q55012) Pentalenene synthase (EC 4.2.3.7)| Length = 336 Score = 30.0 bits (66), Expect = 4.5 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Frame = +2 Query: 29 VFDHQLPAALKKLPFDKHLSLQNVRKVISE-ADGYQPHLIA---PEQGYRRLIDSSLSYF 196 VFD + +A+ ++ D +L L ++ + E A G Q +++ E G+ + S+S+ Sbjct: 197 VFDSAVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSK--SRSVSHM 254 Query: 197 RGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIR 376 + A ++ +L+L+ + + E+ + T A E+LER+R D +TVIR Sbjct: 255 QNEVRARLEQ-YLLLESCLPK----VGEIYQLDT-------AEREALERYRTDAVRTVIR 302
>POLN_BFV (P87515) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3 Length = 2410 Score = 29.6 bits (65), Expect = 5.9 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = +2 Query: 296 TLQSDIAAAA--NESLERFREDGRKTVIRLVDMEASYLTVEFFRKLPTEPDKGANNNTPA 469 TLQ+ +AAA N ++ + RE L +++ L VE FRK +PD Sbjct: 1993 TLQNVLAAATKRNCNVTQMRE--------LPTYDSAVLNVEAFRKYACKPD--------V 2036 Query: 470 NDRYQDNHLRRIGSNVSSYI 529 D Y+DN + NV++Y+ Sbjct: 2037 WDEYRDNPICITTENVTTYV 2056
>SYFB_XANOR (Q5GXY5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 209 EASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIA 316 + V A L L LV+R++ EL RFP+++ D+A Sbjct: 673 DVDVIAFELQLGPLVQRTLPCAGELSRFPSVRRDLA 708
>SYFB_XANOM (Q2P100) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 209 EASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIA 316 + V A L L LV+R++ EL RFP+++ D+A Sbjct: 673 DVDVIAFELQLGPLVQRTLPCAGELSRFPSVRRDLA 708
>SYFB_XANC5 (Q3BRU2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 209 EASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIA 316 + V A L L LV+R++ EL RFP+++ D+A Sbjct: 673 DVDVIAFELQLMPLVQRALPRAGELSRFPSVRRDLA 708
>SYFB_XANAC (Q8PJE5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 209 EASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIA 316 + V A L L LV+R++ EL RFP+++ D+A Sbjct: 673 DVDVIAFELQLMPLVQRTLPRAGELSRFPSVRRDLA 708
>ATPA_MYCTU (P63673) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1| sector alpha subunit) Length = 549 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +2 Query: 155 QGYRRLIDSSLSYFRGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANES 334 QG R I+ +S R A + A+ V L R ++ EL+ F SD+ AA+ Sbjct: 362 QGVRPAINVGVSVSRVGGAAQIKAMKEVAGSL-RLDLSQYRELEAFAAFASDLDAASKAQ 420 Query: 335 LER 343 LER Sbjct: 421 LER 423
>ATPA_MYCBO (P63674) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1| sector alpha subunit) Length = 549 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +2 Query: 155 QGYRRLIDSSLSYFRGPAEASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIAAAANES 334 QG R I+ +S R A + A+ V L R ++ EL+ F SD+ AA+ Sbjct: 362 QGVRPAINVGVSVSRVGGAAQIKAMKEVAGSL-RLDLSQYRELEAFAAFASDLDAASKAQ 420 Query: 335 LER 343 LER Sbjct: 421 LER 423
>UVRC_CHLCH (Q3AQX4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 629 Score = 29.3 bits (64), Expect = 7.7 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Frame = +2 Query: 143 IAPEQGYRRLIDSSLSYFRGPAEASV----DAVHLVLKEL----VRRSIAATEELKRFPT 298 + PE YR++ID + +G A + + +HL EL A E LKR+ Sbjct: 197 LQPEDEYRQMIDEIIKLLKGKTSALIRSLTENMHLAATELRFEQAAEIKAQIESLKRYAE 256 Query: 299 LQSDIAA 319 Q +AA Sbjct: 257 RQKVVAA 263
>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa| golgin) (Golgin-245) (Protein 72.1) Length = 2230 Score = 29.3 bits (64), Expect = 7.7 Identities = 23/88 (26%), Positives = 44/88 (50%) Frame = +2 Query: 263 IAATEELKRFPTLQSDIAAAANESLERFREDGRKTVIRLVDMEASYLTVEFFRKLPTEPD 442 + + E L R P +S +++ ESL R R+++ RL D+++S + + + +E + Sbjct: 69 VPSVESLFRSPIKESLFRSSSKESL--VRTSSRESLNRL-DLDSSTASFDPPSDMDSEAE 125 Query: 443 KGANNNTPANDRYQDNHLRRIGSNVSSY 526 N+ N LRR+ ++SSY Sbjct: 126 DLVGNSDSLNKEQLIQRLRRMERSLSSY 153
>SYFB_PSEF5 (Q4KEV9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 28.9 bits (63), Expect = 10.0 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 8/112 (7%) Frame = +2 Query: 77 KHLSLQNVRKVISEADGYQPHLIAPEQGYRRLIDSSLSYFRGPAEASVDAVHLVLKELVR 256 KH +L + E DG E G+ I L+ G + V LVL E+ + Sbjct: 637 KHPALHPGQTARIERDGR-------EVGFLGAIHPELAKNLG-LDRPVYVFELVLSEVAQ 688 Query: 257 RSIAATEELKRFPTLQSDIA------AAANESLERFREDGRK--TVIRLVDM 388 + EL RFP ++ D+A AA+ L+ RE+ + T +RL D+ Sbjct: 689 GRLPKFHELSRFPEVRRDLALLADRDVAASSVLDVIRENAGEWLTDLRLFDV 740
>SYFB_XANCP (Q8P7Z6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 791 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +2 Query: 209 EASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIA 316 + V A L L LV+R++ EL R+P+++ D+A Sbjct: 672 DVDVIAFELQLAPLVKRALPRAGELSRYPSMRRDLA 707
>SYFB_XANC8 (Q4UW52) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 791 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +2 Query: 209 EASVDAVHLVLKELVRRSIAATEELKRFPTLQSDIA 316 + V A L L LV+R++ EL R+P+++ D+A Sbjct: 672 DVDVIAFELQLAPLVKRALPRAGELSRYPSMRRDLA 707 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,888,052 Number of Sequences: 219361 Number of extensions: 1236840 Number of successful extensions: 3449 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3444 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
