ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7b21 |
|---|---|
| Clone Library Name | barley_pub |
>SYMM_DROME (Q9VFL5) Methionyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.10) (Mitochondrial methionine--tRNA ligase) Length = 582 Score = 32.3 bits (72), Expect = 0.53 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%) Frame = +3 Query: 306 FGVLVDHTIAGLHKVHRGFDSGR----EAGMPEGNEAHSEPVL 422 F ++ D T+A LH + F+S + +AG P+GN+A E ++ Sbjct: 432 FHLVADTTMAALHAANNFFESSKPWTLKAGAPDGNQARLETII 474
>GCST_NITEU (Q82WQ6) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 363 Score = 31.6 bits (70), Expect = 0.91 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Frame = +1 Query: 250 DTLHADFGESAIGR-----VAPVDSGFWWIILLRAYTKSTGDLTLAERPECQKAMRLIL 411 DTL + G + G+ V P++SG W + L++ TG TL E P ++ + L+L Sbjct: 226 DTLRLEAGMNLYGQDMDETVNPLESGLAWTVDLKSERDFTGKQTLLETPVNRQLVGLVL 284
>NOSZ_RALSO (Q8XQB8) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)| (N2O reductase) Length = 646 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 15/61 (24%) Frame = +3 Query: 288 AGCTSGFGVLV---DHTIAGLHK------VHRGFDSG------REAGMPEGNEAHSEPVL 422 AG + GV +HT+AGLH + G SG R GMP G E H P+ Sbjct: 47 AGSAAATGVAATAEEHTVAGLHPKPGQLDTYYGLWSGGHTGDMRVMGMPSGREIHRIPMF 106 Query: 423 V 425 V Sbjct: 107 V 107
>GNPTA_MOUSE (Q69ZN6) N-acetylglucosamine-1-phosphotransferase subunits| alpha/beta precursor (EC 2.7.8.17) (GlcNAc-1-phosphotransferase alpha/beta subunits) (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta subunits) (Stealth protein GNPTAB) [Conta Length = 1235 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +3 Query: 18 PLSTCIRGSPK--L*PGVCERFRAQRHGVSDEWRAGDCQELPAQDRFVAGLGEEG 176 P+ C G P + G C++ A + D W GDC A +RFVAG G G Sbjct: 434 PVPNCAEGCPGSWIKDGYCDK--ACNNSACD-WDGGDCSGNTAGNRFVAGGGGTG 485
>ISPE_PARUW (Q6MAT6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 288 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%) Frame = +1 Query: 88 AMAFLMNGEPEIVKNFLLK----TVLLQGWEKKVDRFKLGEGAMPASFK 222 A AF + E +I+KN LL TVL+ G F +G+G +PASFK Sbjct: 220 ASAFEIKPELKILKNTLLSSGFDTVLMSGSGSSF--FCIGQGQIPASFK 266
>RPOA_CHRVO (Q7NQH7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 327 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +1 Query: 166 EKKVDRFKLGEGAMPASFKVLHDDKKGVDTLHADFGESAIGRVA 297 E KV++ G G P S + HDD + + T+ D S + RV+ Sbjct: 142 EVKVEK---GRGYQPVSARTSHDDNRSIGTIQLDASFSPVRRVS 182
>SKI_CHICK (P49140) Ski oncogene (C-ski)| Length = 750 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -3 Query: 175 PSSPNPATKRS*AGSS*QSPARHSSETPWRWARNLSQTPGHSLGL--PRMQVES 20 PS P + K S+ QSPA E W R+LS + S+G PR ++ + Sbjct: 343 PSDPPASKKTKIDDSASQSPASTEKEKQSSWLRSLSSSSNKSIGCVHPRQRLSA 396
>RLC1_CITLI (Q8L5K3) (R)-limonene synthase 1 (EC 4.2.3.20) ((+)-limonene| synthase 1) Length = 606 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = +1 Query: 1 AAWYHRRFRPASEEVLNYDQVFVRDFVPSAMAFLMNGEPEIVK--NFLLKTVLLQGWEKK 174 A WYH ++ P EE L V + + +++L P I K FL + W K Sbjct: 422 AKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSK 481 Query: 175 VDRFK 189 + R + Sbjct: 482 IFRLQ 486
>CEMA_CHLVU (P56349) Chloroplast envelope membrane protein| Length = 266 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +1 Query: 37 EEVLNYDQVFVRDFVPSAMAFLMNGEPEIVKNFLLKTV 150 EE + +D FV DF PS+ L EI KN+ L+++ Sbjct: 105 EEKVYFDS-FVTDFAPSSNVLLQKQSVEIAKNYNLESI 141
>TENR_MOUSE (Q8BYI9) Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural| recognition molecule J1-160/180) Length = 1358 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = +3 Query: 279 RNWAGCTSGFGVLVDHTIAGLHKVHRGFDSGR---EAGMPEGNEA 404 R WA GFG L D GL +HR GR M +G EA Sbjct: 1192 RKWADYRVGFGNLEDEFWLGLDNIHRITAQGRYELRVDMRDGQEA 1236
>TENR_HUMAN (Q92752) Tenascin-R precursor (TN-R) (Restrictin) (Janusin)| Length = 1358 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = +3 Query: 279 RNWAGCTSGFGVLVDHTIAGLHKVHRGFDSGR---EAGMPEGNEA 404 R WA GFG + D GL +HR GR M +G EA Sbjct: 1192 RKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYELRVDMRDGQEA 1236
>Y4AB_RHISN (P55349) Hypothetical 44.6 kDa protein y4aB| Length = 417 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -2 Query: 176 TFFSQPCNKTVLSRKFLTISGSPFIRN-AMALGTKS 72 +FF N T+ + L +SG+ ++RN A A+GT+S Sbjct: 43 SFFDSATNLTIDNGNHLVLSGNQYVRNYARAIGTES 78
>UVRC_RICCN (Q92HA7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 639 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = -1 Query: 165 PTLQQNGLEQEVLDNLRLAIHQKRHG-----AGHEISHKHLVI 52 PT +N ++EVL+ L +QK+H HEI+ K VI Sbjct: 287 PTATENSTKEEVLEYFLLQFYQKQHVPAAIIINHEINDKENVI 329
>ADA21_MOUSE (Q9JI76) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 21) (ADAM 31) Length = 729 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +2 Query: 140 SRPFCCRVGRRRLIGLSLVRGPCLQALKCFMTIRRVLIPFTPILVRAQLGGLHQ 301 S PFC G G S+ GP Q + +T+ + +P IL+ + GL++ Sbjct: 662 SPPFCLHRG----YGGSIDSGPTSQKRRVIITVLSITVPVLSILICLLIAGLYR 711
>DNJB2_HUMAN (P25686) DnaJ homolog subfamily B member 2 (Heat shock 40 kDa| protein 3) (DnaJ protein homolog 1) (HSJ-1) Length = 351 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = -3 Query: 295 QPAQLRSHQNRREGYQHPSYRHEAL*SLQAW--PPHQA*TDQPSSPNPATKRS*AGSS 128 +PA R Q+RR+G PS + +QAW P QP++ +P +R A SS Sbjct: 272 KPAGGREAQHRRQGRPRPSTK------IQAWGGPRRVRGVKQPNAVHPQRRRPLAASS 323
>SMBT2_MOUSE (Q5DTW2) Scm-like with four MBT domains protein 2| Length = 938 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Frame = -3 Query: 403 ASLPSGIPASLPESNPRWTLCRPAIV*STRTPNPLVQPAQLRSHQNRRE---------GY 251 A +P GIPAS+PES P P + P + + + ++ Q +RE GY Sbjct: 727 AGIPEGIPASIPESIPEGI---PESL-PEAIPESIPKGSAQKTEQEKRETLDTARKKTGY 782 Query: 250 QHPSYR 233 P+Y+ Sbjct: 783 HGPAYQ 788
>NPD_STAAU (Q53700) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein| SIR2 homolog) Length = 243 Score = 28.5 bits (62), Expect = 7.7 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 9/136 (6%) Frame = +1 Query: 22 FRPASEEVLNYDQVFVRDFVPSAMAFLMNGEPEIVKNFLLKTVL--------LQGWEKKV 177 F S++ L+ + + RD+ + +PE NF K +L + W K+ Sbjct: 42 FDEISKDGLSPEYLLSRDY--------LEDDPEGFINFCHKRLLFVDTMPNIVHDWIAKL 93 Query: 178 DRFKLGEGAMPASFKVLHDDKKGVDTLHADFGESAIGRVAPVDSGFWWIILLRAYTKS-T 354 +R + G + + +D LH+D G + + + F+ + ++YTKS Sbjct: 94 ERNQQSLGVIT----------QNIDGLHSDAGSQHVDELHGTLNRFYCNVCHKSYTKSDV 143 Query: 355 GDLTLAERPECQKAMR 402 D TL C A+R Sbjct: 144 IDRTLKHCDNCGGAIR 159
>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)| Length = 1353 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = +3 Query: 279 RNWAGCTSGFGVLVDHTIAGLHKVHRGFDSGR---EAGMPEGNEA 404 R WA GFG L D GL +H+ GR M +G EA Sbjct: 1187 RKWADYRVGFGNLEDEFWLGLDNIHKITSQGRYELRIDMRDGQEA 1231
>EXP24_ARATH (Q9FL76) Alpha-expansin 24 precursor (AtEXPA24) (At-EXP24) (AtEx24)| (Ath-ExpAlpha-1.19) Length = 312 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Frame = -1 Query: 432 SLRQAQAQNEPHCLLAFRPLCQSQ----IPGGLCVGPQ*YDPPE---PRIHWCNPP 286 +L A N C + +C+ +PG + + + PP+ P +WCNPP Sbjct: 127 ALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDNWCNPP 182
>APC_RAT (P70478) Adenomatous polyposis coli protein (Protein APC)| Length = 2842 Score = 28.5 bits (62), Expect = 7.7 Identities = 32/126 (25%), Positives = 50/126 (39%) Frame = -3 Query: 409 E*ASLPSGIPASLPESNPRWTLCRPAIV*STRTPNPLVQPAQLRSHQNRREGYQHPSYRH 230 E AS S P+S P+S R P + +P + L +H + + G Sbjct: 2458 ESASFESLSPSSRPDSPTRSQAQTPVL-------SPSLPDMSLSTHPSVQAG-------- 2502 Query: 229 EAL*SLQAWPPHQA*TDQPSSPNPATKRS*AGSS*QSPARHSSETPWRWARNLSQTPGHS 50 + PP+ + T + S P+ + A S +SP+R W R S+ HS Sbjct: 2503 ----GWRKLPPNLSPTIEYSDGRPSKRHDIARSHSESPSRLPVNRAGTWKREHSK---HS 2555 Query: 49 LGLPRM 32 LPR+ Sbjct: 2556 SSLPRV 2561
>RNF25_MOUSE (Q9QZR0) RING finger protein 25 (EC 6.3.2.-) (RING finger protein| AO7) Length = 456 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = -3 Query: 214 LQAWPPHQA*TDQPSSPNPATKRS*AGSS*QSPARHSSETPWRWARNLSQTPGHSL-GLP 38 L+A P ++ T P P S Q P+ + RW R+ ++TPG LP Sbjct: 382 LKAEPRNKGLTGHPQEKGPG--------SWQGPSARRTRDCARWERSKNRTPGSCYPHLP 433 Query: 37 RMQVESGDGTKR 2 R Q GT+R Sbjct: 434 RGQGAYRSGTRR 445 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,713,973 Number of Sequences: 219361 Number of extensions: 1821548 Number of successful extensions: 5055 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5039 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
