ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags6m17 |
|---|---|
| Clone Library Name | barley_pub |
>CPSF5_BRARE (Q7T3C6) Cleavage and polyadenylation specificity factor 5| Length = 228 Score = 185 bits (469), Expect(2) = 2e-49 Identities = 87/151 (57%), Positives = 108/151 (71%) Frame = +3 Query: 195 EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPG 374 EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PG Sbjct: 56 EKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPG 115 Query: 375 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCPPHITKPKECKK 554 E+E+EGLKR L +++ +W + +C+ WWRPNFE YPY P HITKPKE KK Sbjct: 116 EDEVEGLKR-LMTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKK 174 Query: 555 LFIVHLTEREYFAVPRNLKLLAVPLFELYDN 647 LF+V L E+ FAVP+N KL+A PLFELYDN Sbjct: 175 LFLVQLQEKALFAVPKNYKLVAAPLFELYDN 205 Score = 30.8 bits (68), Expect(2) = 2e-49 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 140 VNVYPLANYTFGTK 181 +N+YPL NYTFGTK Sbjct: 38 INLYPLTNYTFGTK 51
>CPSF5_XENLA (Q6DJE4) Cleavage and polyadenylation specificity factor 5| Length = 227 Score = 184 bits (468), Expect(2) = 3e-49 Identities = 87/151 (57%), Positives = 108/151 (71%) Frame = +3 Query: 195 EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPG 374 EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PG Sbjct: 55 EKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPG 114 Query: 375 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCPPHITKPKECKK 554 E+E+EGLKR L +++ +W + +C+ WWRPNFE YPY P HITKPKE KK Sbjct: 115 EDEVEGLKR-LMTEILGRQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKK 173 Query: 555 LFIVHLTEREYFAVPRNLKLLAVPLFELYDN 647 LF+V L E+ FAVP+N KL+A PLFELYDN Sbjct: 174 LFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204 Score = 30.8 bits (68), Expect(2) = 3e-49 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 140 VNVYPLANYTFGTK 181 +N+YPL NYTFGTK Sbjct: 37 INLYPLTNYTFGTK 50
>CPSF5_RAT (Q4KM65) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 184 bits (466), Expect(2) = 4e-49 Identities = 87/151 (57%), Positives = 108/151 (71%) Frame = +3 Query: 195 EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPG 374 EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PG Sbjct: 55 EKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPG 114 Query: 375 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCPPHITKPKECKK 554 E+E+EGLKR L +++ +W + +C+ WWRPNFE YPY P HITKPKE KK Sbjct: 115 EDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKK 173 Query: 555 LFIVHLTEREYFAVPRNLKLLAVPLFELYDN 647 LF+V L E+ FAVP+N KL+A PLFELYDN Sbjct: 174 LFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204 Score = 30.8 bits (68), Expect(2) = 4e-49 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 140 VNVYPLANYTFGTK 181 +N+YPL NYTFGTK Sbjct: 37 INLYPLTNYTFGTK 50
>CPSF5_PONPY (Q5RAI8) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 184 bits (466), Expect(2) = 4e-49 Identities = 87/151 (57%), Positives = 108/151 (71%) Frame = +3 Query: 195 EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPG 374 EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PG Sbjct: 55 EKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPG 114 Query: 375 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCPPHITKPKECKK 554 E+E+EGLKR L +++ +W + +C+ WWRPNFE YPY P HITKPKE KK Sbjct: 115 EDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKK 173 Query: 555 LFIVHLTEREYFAVPRNLKLLAVPLFELYDN 647 LF+V L E+ FAVP+N KL+A PLFELYDN Sbjct: 174 LFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204 Score = 30.8 bits (68), Expect(2) = 4e-49 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 140 VNVYPLANYTFGTK 181 +N+YPL NYTFGTK Sbjct: 37 INLYPLTNYTFGTK 50
>CPSF5_MOUSE (Q9CQF3) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 184 bits (466), Expect(2) = 4e-49 Identities = 87/151 (57%), Positives = 108/151 (71%) Frame = +3 Query: 195 EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPG 374 EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PG Sbjct: 55 EKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPG 114 Query: 375 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCPPHITKPKECKK 554 E+E+EGLKR L +++ +W + +C+ WWRPNFE YPY P HITKPKE KK Sbjct: 115 EDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKK 173 Query: 555 LFIVHLTEREYFAVPRNLKLLAVPLFELYDN 647 LF+V L E+ FAVP+N KL+A PLFELYDN Sbjct: 174 LFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204 Score = 30.8 bits (68), Expect(2) = 4e-49 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 140 VNVYPLANYTFGTK 181 +N+YPL NYTFGTK Sbjct: 37 INLYPLTNYTFGTK 50
>CPSF5_HUMAN (O43809) Cleavage and polyadenylation specificity factor 5| (Cleavage and polyadenylation specificity factor 25 kDa subunit) (CPSF 25 kDa subunit) (Pre-mRNA cleavage factor Im 25-kDa subunit) (Nucleoside diphosphate-linked moiety X motif 21) ( Length = 227 Score = 184 bits (466), Expect(2) = 4e-49 Identities = 87/151 (57%), Positives = 108/151 (71%) Frame = +3 Query: 195 EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPG 374 EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PG Sbjct: 55 EKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPG 114 Query: 375 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCPPHITKPKECKK 554 E+E+EGLKR L +++ +W + +C+ WWRPNFE YPY P HITKPKE KK Sbjct: 115 EDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKK 173 Query: 555 LFIVHLTEREYFAVPRNLKLLAVPLFELYDN 647 LF+V L E+ FAVP+N KL+A PLFELYDN Sbjct: 174 LFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204 Score = 30.8 bits (68), Expect(2) = 4e-49 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 140 VNVYPLANYTFGTK 181 +N+YPL NYTFGTK Sbjct: 37 INLYPLTNYTFGTK 50
>CPSF5_BOVIN (Q3ZCA2) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 184 bits (466), Expect(2) = 4e-49 Identities = 87/151 (57%), Positives = 108/151 (71%) Frame = +3 Query: 195 EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPG 374 EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PG Sbjct: 55 EKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPG 114 Query: 375 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCPPHITKPKECKK 554 E+E+EGLKR L +++ +W + +C+ WWRPNFE YPY P HITKPKE KK Sbjct: 115 EDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKK 173 Query: 555 LFIVHLTEREYFAVPRNLKLLAVPLFELYDN 647 LF+V L E+ FAVP+N KL+A PLFELYDN Sbjct: 174 LFLVQLQEKALFAVPKNYKLVAAPLFELYDN 204 Score = 30.8 bits (68), Expect(2) = 4e-49 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 140 VNVYPLANYTFGTK 181 +N+YPL NYTFGTK Sbjct: 37 INLYPLTNYTFGTK 50
>MADS3_ORYSA (Q40704) MADS-box transcription factor 3 (OsMADS3) (Protein| AGAMOUS-like) (RMADS222) Length = 236 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 528 YVEGNKDTSRSQSLASTKQQHTHQPAS*VEMKVSSLQ 418 Y + N DTS S ++A QH Q +S + ++SSLQ Sbjct: 69 YKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQ 105
>HSP71_TRYCR (P20583) Heat shock 70 kDa protein, mitochondrial precursor| Length = 656 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = -1 Query: 537 AWLYVEGNKDTSRSQSLASTKQQHTHQPAS*VEMKVSSLQVCCTAFFSGPQ 385 AW+ K S SQ A ++ + + KVS+ V C A+F+GPQ Sbjct: 125 AWVQDANGKQYSPSQVGAFVLEKMKETAENFLGRKVSNAVVTCPAYFNGPQ 175
>Y693_HELHP (Q7U326) Hypothetical RNA methyltransferase HH_0693 (EC 2.1.1.-)| Length = 404 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 441 PPNWQVGECVAVWWRPNFETVMYPYCPPH 527 PP VGE +++ NF T++Y C PH Sbjct: 333 PPRSGVGEEEVLYFLQNFNTIIYVSCNPH 361
>SEM4B_HUMAN (Q9NPR2) Semaphorin-4B precursor| Length = 832 Score = 29.6 bits (65), Expect = 8.0 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 366 KPGENEIEGLKRK-LCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMYPYCP 521 +P +IEG K LCS +V SPSF P + C V ++PN TV CP Sbjct: 558 RPWIQDIEGASAKDLCSASSVVSPSFVPTGE-KPCEQVQFQPN--TVNTLACP 607
>MAD58_ORYSA (Q2V0P1) MADS-box transcription factor 58 (OsMADS58)| Length = 272 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -1 Query: 528 YVEGNKDTSRSQSLASTKQQHTHQPAS*VEMKVSSLQ 418 Y + N DTS + ++A QH Q A+ ++ ++++LQ Sbjct: 111 YKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQ 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,350,872 Number of Sequences: 219361 Number of extensions: 1685303 Number of successful extensions: 4388 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4381 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
