ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7b15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VG66_BPMD2 (O64258) Gene 66 protein (Gp66) 29 2.8
2LCK_AEDAE (O02036) Leucokinins precursor [Contains: Leucokinin-1... 28 4.8
3GRPE_MYCPN (P78017) Protein grpE (HSP-70 cofactor) 28 4.8
4ROCA2_BACSU (P94391) 1-pyrroline-5-carboxylate dehydrogenase 2 (... 28 8.2

>VG66_BPMD2 (O64258) Gene 66 protein (Gp66)|
          Length = 199

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 19 MDNLWHLGDEFRGQSKVVEDRQWS 90
          M N+W   D   G +KV EDR W+
Sbjct: 1  MSNVWFTSDLHIGHAKVAEDRDWA 24



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>LCK_AEDAE (O02036) Leucokinins precursor [Contains: Leucokinin-1;|
           Leucokinin-3; Leucokinin-2]
          Length = 228

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 31  WHLGDEFRGQSKVVEDRQWSLMTSKLAEITKSKAERMNDFEYARMNTVPDVKQWDK 198
           W L +     +K++E  +W+   + ++EI   +  +   + +  ++ V  V +W+K
Sbjct: 19  WELNENDDSLAKIIEGCEWTSRQNVISEILLDRYRKYAMYNFFLLDDVCAVHEWNK 74



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>GRPE_MYCPN (P78017) Protein grpE (HSP-70 cofactor)|
          Length = 217

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
 Frame = +1

Query: 13  ESMDNLWHLGDEFRGQSKVVEDRQWSLMTSKLAEIT-KSKAERMNDFEYARMNTVPD--- 180
           + + NL  + +EFR + + +++     +  K+AE+T KSK E  N  +Y    ++     
Sbjct: 57  QKIPNLQKVNEEFRLKVEKIQEEAQKKIQEKVAELTIKSKEELENAKKYVIEKSIDQPLI 116

Query: 181 -VKQWD-KLSYHQED 219
            + Q++  LSY Q+D
Sbjct: 117 IIDQFEIALSYAQKD 131



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>ROCA2_BACSU (P94391) 1-pyrroline-5-carboxylate dehydrogenase 2 (EC 1.5.1.12)|
           (P5C dehydrogenase 2)
          Length = 515

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 55  GQSKVVEDRQWSLMTSKLAEITKSKAERMNDFEYARMNTVPDVKQWDKLSYHQEDNKMD 231
           G   VV ++ +  +  ++ EIT+SK     D     M  V D   +DK+  + E  K +
Sbjct: 323 GSRAVVHEKVYDQVLERVIEITESKVTAKPDSADVYMGPVIDQGSYDKIMSYIEIGKQE 381


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,852,682
Number of Sequences: 219361
Number of extensions: 466372
Number of successful extensions: 1410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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