ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7b15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 246 bits (124), Expect = 3e-62 Identities = 202/228 (88%) Strand = Plus / Minus Query: 17 ctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtggagg 76 ||||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||| Sbjct: 12264 ctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagtggagg 12205 Query: 77 accgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctgaga 136 |||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| |||| Sbjct: 12204 accgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggcggaga 12145 Query: 137 ggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatgggata 196 ||| |||||| |||| ||||| |||||||||| |||||||||| ||||||||||||| Sbjct: 12144 ggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatgggata 12085 Query: 197 agctatcctaccaccaagaagacaacaagatggaccacctcaatcttg 244 || |||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 12084 aggtatcctaccaccaagatgagagcaagatggaccacctcaatcttg 12037
>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04, complete sequence Length = 122599 Score = 246 bits (124), Expect = 3e-62 Identities = 202/228 (88%) Strand = Plus / Minus Query: 17 ctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtggagg 76 ||||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||| Sbjct: 95381 ctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagtggagg 95322 Query: 77 accgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctgaga 136 |||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| |||| Sbjct: 95321 accgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggcggaga 95262 Query: 137 ggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatgggata 196 ||| |||||| |||| ||||| |||||||||| |||||||||| ||||||||||||| Sbjct: 95261 ggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatgggata 95202 Query: 197 agctatcctaccaccaagaagacaacaagatggaccacctcaatcttg 244 || |||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 95201 aggtatcctaccaccaagatgagagcaagatggaccacctcaatcttg 95154
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 246 bits (124), Expect = 3e-62 Identities = 202/228 (88%) Strand = Plus / Minus Query: 17 ctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtggagg 76 ||||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||| Sbjct: 24409591 ctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagtggagg 24409532 Query: 77 accgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctgaga 136 |||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| |||| Sbjct: 24409531 accgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggcggaga 24409472 Query: 137 ggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatgggata 196 ||| |||||| |||| ||||| |||||||||| |||||||||| ||||||||||||| Sbjct: 24409471 ggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatgggata 24409412 Query: 197 agctatcctaccaccaagaagacaacaagatggaccacctcaatcttg 244 || |||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 24409411 aggtatcctaccaccaagatgagagcaagatggaccacctcaatcttg 24409364
>dbj|AK065975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045D18, full insert sequence Length = 1546 Score = 246 bits (124), Expect = 3e-62 Identities = 202/228 (88%) Strand = Plus / Plus Query: 17 ctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtggagg 76 ||||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||| Sbjct: 243 ctatggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagtggagg 302 Query: 77 accgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctgaga 136 |||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| |||| Sbjct: 303 accgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggcggaga 362 Query: 137 ggatgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatgggata 196 ||| |||||| |||| ||||| |||||||||| |||||||||| ||||||||||||| Sbjct: 363 ggacgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatgggata 422 Query: 197 agctatcctaccaccaagaagacaacaagatggaccacctcaatcttg 244 || |||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 423 aggtatcctaccaccaagatgagagcaagatggaccacctcaatcttg 470
>ref|XM_475495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 945 Score = 242 bits (122), Expect = 4e-61 Identities = 200/226 (88%) Strand = Plus / Plus Query: 19 atggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtggaggac 78 ||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||||| Sbjct: 1 atggacaacttgtggcatctcggggatgagttccgtgggcagtcgaaggtagtggaggac 60 Query: 79 cgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctgagagg 138 || || ||||||||||||||||| ||| |||||||||||| ||||| ||||| |||||| Sbjct: 61 cgtcagtggtctctcatgacatcgaagttggctgagatcaacaagtccaaggcggagagg 120 Query: 139 atgaatgactttgagtatgcaaggatgaacactgtccctgatgtgaagcaatgggataag 198 | |||||| |||| ||||| |||||||||| |||||||||| ||||||||||||||| Sbjct: 121 acgaatgagcttgactatgcgcggatgaacaccatccctgatgtcaagcaatgggataag 180 Query: 199 ctatcctaccaccaagaagacaacaagatggaccacctcaatcttg 244 |||||||||||||||| || | ||||||||||||||||||||||| Sbjct: 181 gtatcctaccaccaagatgagagcaagatggaccacctcaatcttg 226
>gb|AY104790.1| Zea mays PCO093811 mRNA sequence Length = 1604 Score = 93.7 bits (47), Expect = 2e-16 Identities = 107/127 (84%) Strand = Plus / Plus Query: 17 ctatggacaacttgtggcatctcggagatgagttccgtggtcaatcaaaggtggtggagg 76 ||||||||| | |||||||||| || || ||| |||| || || | ||||||||||||| Sbjct: 173 ctatggacagcctgtggcatcttggggacgagctccgcgggcagcccaaggtggtggagg 232 Query: 77 accgccaatggtctctcatgacatcaaagctggctgagatcacaaagtcaaaggctgaga 136 ||||||| |||||||||||||| || |||||||| |||||||| | ||| |||| |||| Sbjct: 233 accgccagtggtctctcatgacgtccaagctggcggagatcaccaggtccaagggcgaga 292 Query: 137 ggatgaa 143 ||||||| Sbjct: 293 ggatgaa 299
>gb|BT016764.1| Zea mays clone Contig597 mRNA sequence Length = 1573 Score = 79.8 bits (40), Expect = 4e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 64 aaggtggtggaggaccgccaatggtctctcatgacatcaaagctggctgagatcac 119 |||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| Sbjct: 166 aaggtggtggaggaccgccagtggtcgctcatgacatccaagctggcagagatcac 221
>gb|AC165369.3| Gallus gallus BAC clone CH261-58G18 from chromosome ul, complete sequence Length = 208903 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 tcatgacatcaaagctggctgagat 116 |||||||||||||||| |||||||| Sbjct: 187248 tcatgacatcaaagctagctgagat 187224
>gb|AC138388.3| Mus musculus BAC clone RP23-455J6 from 10, complete sequence Length = 164600 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 ggatgaacactgtccctgatg 181 ||||||||||||||||||||| Sbjct: 80055 ggatgaacactgtccctgatg 80075
>emb|Y13759.1|ENY13759 Emericella nidulans abfB gene Length = 3141 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 atgcaaggatgaacactgtcc 175 ||||||||||||||||||||| Sbjct: 379 atgcaaggatgaacactgtcc 399
>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence Length = 179537 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 tcatgacatcaaagctggctgagat 116 |||||||||||||||| |||||||| Sbjct: 43334 tcatgacatcaaagctagctgagat 43310
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 catgacatcaaagctggctg 112 |||||||||||||||||||| Sbjct: 4820859 catgacatcaaagctggctg 4820840
>ref|XM_448424.1| Candida glabrata CBS138, CAGL0K04565g partial mRNA Length = 1863 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 acaaagtcaaaggctgagag 137 |||||||||||||||||||| Sbjct: 427 acaaagtcaaaggctgagag 446
>emb|AL845433.4| Human DNA sequence from clone RP11-674N8 on chromosome X Contains a chromobox homolog 5 (HP1 alpha homolog, Drosophila) (CBX5) pseudogene, the 5' end of the NHS gene for Nance-Horan syndrome (congenital cataracts and dental anomalies) and two CpG islands, complete sequence Length = 200476 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 atggtctctcatgacatcaa 103 |||||||||||||||||||| Sbjct: 57525 atggtctctcatgacatcaa 57544
>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence Length = 1302002 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 acaaagtcaaaggctgagag 137 |||||||||||||||||||| Sbjct: 433345 acaaagtcaaaggctgagag 433326
>gb|AC080145.8| Homo sapiens chromosome 15, clone CTD-2298D17, complete sequence Length = 115632 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 atgtgaagcaatgggataag 198 |||||||||||||||||||| Sbjct: 57760 atgtgaagcaatgggataag 57741
>emb|AL954673.5| Zebrafish DNA sequence from clone BUSM1-122B7 in linkage group 20, complete sequence Length = 84303 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 accaagaagacaacaagatg 228 |||||||||||||||||||| Sbjct: 33217 accaagaagacaacaagatg 33198 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,068,383 Number of Sequences: 3902068 Number of extensions: 2068383 Number of successful extensions: 37203 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37169 Number of HSP's gapped (non-prelim): 34 length of query: 244 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 222 effective length of database: 17,147,199,772 effective search space: 3806678349384 effective search space used: 3806678349384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
