ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags7b14 |
|---|---|
| Clone Library Name | barley_pub |
>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA| N-glycosidase) Length = 560 Score = 375 bits (963), Expect = e-104 Identities = 187/190 (98%), Positives = 187/190 (98%) Frame = +1 Query: 7 TRAYGPIVFNLDLHDGTRGQADEEEDEKNTGRIVCDAIGGDFSNYNKAISETVLTRCGPA 186 T AYGPIVFNLDLHDG GQADEEEDEKNTGRIVCDAIGGDFSNYNKAISETVLTRCGPA Sbjct: 370 TSAYGPIVFNLDLHDGNCGQADEEEDEKNTGRIVCDAIGGDFSNYNKAISETVLTRCGPA 429 Query: 187 EVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDFGCVLFYNEAAGVRVRPG 366 EVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDFGCVLFYNEAAGVRVRPG Sbjct: 430 EVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDFGCVLFYNEAAGVRVRPG 489 Query: 367 ELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLVGVNDAEF 546 ELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLVGVNDAEF Sbjct: 490 ELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLVGVNDAEF 549 Query: 547 EVTILWSEYP 576 EVTILWSEYP Sbjct: 550 EVTILWSEYP 559
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 36.2 bits (82), Expect = 0.086 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 4/156 (2%) Frame = -1 Query: 560 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLA 381 K+ T+ + T T P P A+ + P+ I ++ GT Sbjct: 2579 KVPTTTTTGFTAT--PSSSPGTAL---TPPVWISTTTTPTTRGSTVTPSSIPGTTHTATV 2633 Query: 380 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 213 T++ G TP++S S P S + TI T +T++ P+S TRP P Sbjct: 2634 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTRPIPP 2689 Query: 212 LLRTA*ITSAGPQRVRTVSDMALL*LEKSPPMASHT 105 +L T T A TV+ + L +PP+ + T Sbjct: 2690 VLTTTATTPAATS--STVTPSSALGTTHTPPVPNTT 2723 Score = 33.9 bits (76), Expect = 0.43 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Frame = -1 Query: 560 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLA 381 K+ T+ + T T P P A+ + P+ I ++ GT Sbjct: 3277 KVPTTTTTGFTAT--PSSSPGTAL---TPPVWISTTTTPTTRGSTVTPSSIPGTTHTATV 3331 Query: 380 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 213 T++ G TP++S S P S + TI T +T++ P+S T P P Sbjct: 3332 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTTPIPP 3387 Query: 212 LLRTA*ITSAGPQRVRTVSDMALL*LEKSPPMASHT 105 +L T T A TV+ + L +PP+ + T Sbjct: 3388 VLTTTATTPAATS--STVTPSSALGTTHTPPVPNTT 3421 Score = 33.5 bits (75), Expect = 0.56 Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 24/170 (14%) Frame = -1 Query: 593 TWVSTKGYSDHKIVTSNSASLTPTRRPVWRPSMAVL---------------NSSSPLTIX 459 TW+ T+ + S ++ TP+ P P VL +SSSP T Sbjct: 4189 TWILTELTTTATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSSKATSSSSPRTAT 4248 Query: 458 XXXXXXXXXXSIVSGMCSGTASACLAKGTSSPGRTRTPAASL*KSTQPKS--NSLLRATI 285 + + S+ L + P +T TP A++ + P S + +T+ Sbjct: 4249 TLPVLTSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPVATM-STIHPSSTPETTHTSTV 4307 Query: 284 LPTRTTSSRDCRPASFTSTRPWTP-------LLRTA*ITSAGPQRVRTVS 156 L T+ T+ R S TST TP L TA T+AG T S Sbjct: 4308 LTTKATT----RATSSTSTPSSTPGTTWILTELTTAATTTAGTGPTATPS 4353 Score = 32.7 bits (73), Expect = 0.95 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Frame = -1 Query: 560 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLA 381 K++T+ + T T P P A + P+ I ++ GT Sbjct: 2050 KVLTTTTTGFTAT--PSSSPGRA---RTLPVWISTTTTPTTRGSTVTPSSIPGTTHTPTV 2104 Query: 380 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 213 T++ G TP++S S P S + TI T +T++ P+S T P P Sbjct: 2105 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTTPIPP 2160 Query: 212 LLRTA*ITSAGPQRVRTVSDMALL*LEKSPPMASHT 105 +L T T A TV+ + L +PP+ + T Sbjct: 2161 VLTTTATTPAATS--STVTPSSALGTTHTPPVPNTT 2194 Score = 32.0 bits (71), Expect = 1.6 Identities = 33/132 (25%), Positives = 50/132 (37%) Frame = -1 Query: 551 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLAKGT 372 +S +LTP PVW + +++P T S + G T Sbjct: 4548 SSPGTALTP---PVW-----ISTTTTPTTTTPTTSGSTVTPSSIPGTTHTARVLTTTTTT 4599 Query: 371 SSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLLRTA*I 192 + G TP++S S P S + TI T +T++ P+S T P P+L + Sbjct: 4600 VATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTTPIPPVLTSMAT 4655 Query: 191 TSAGPQRVRTVS 156 T A T S Sbjct: 4656 TPAATSSKATSS 4667 Score = 29.6 bits (65), Expect = 8.0 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 3/153 (1%) Frame = -1 Query: 554 VTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLAKG 375 VT +S+ T PVW + +++P T S + T + + Sbjct: 3817 VTPSSSPGTARTPPVW-----ISTTTTPTT--------SGSTVTPSSIPGTTHTPTVLTT 3863 Query: 374 TSSP---GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLLR 204 T+ P G TP++S S P S TI T +T++ P+S T P P L Sbjct: 3864 TTQPVATGSMATPSSSTQTSGTPPSLITTATTITATGSTTN----PSSTPGTTPIPPELT 3919 Query: 203 TA*ITSAGPQRVRTVSDMALL*LEKSPPMASHT 105 T T A TV+ + L +PP+ + T Sbjct: 3920 TTATTPAATS--STVTPSSALGTTHTPPVPNTT 3950
>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)| Length = 610 Score = 33.1 bits (74), Expect = 0.73 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Frame = -1 Query: 587 VSTKGYSDHKIVTSNSASLT-PTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXS--IVS 417 VST + + ++SAS + T PV S A ++PL + + +V+ Sbjct: 452 VSTSHATSLPVTDTSSASTSHATSLPVTDTSSASTGHATPLPVTDTSSASTGHATPLLVT 511 Query: 416 GMCSGTASACLAKGTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASF 237 S + +SP T A+ T P S S AT LP TSS Sbjct: 512 DTSSASTGHTTPLHVTSPSSASTGHATPLPVTSPSSASTSHATSLPVTDTSS-------- 563 Query: 236 TSTRPWTPLLRT 201 ST TPLL T Sbjct: 564 ASTGHATPLLVT 575
>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2| Length = 306 Score = 32.3 bits (72), Expect = 1.2 Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 7/114 (6%) Frame = -1 Query: 533 LTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLAKGTSSPGRT 354 L P RP R A L S P+T + + C+G C A ++P Sbjct: 132 LEPRARPSGRTPPAQLRSPWPMTAAGPASRARASETGSTASCAGRWRTCCA-AAAAPSAA 190 Query: 353 RTPAASL*KSTQPKSNSLLRATILP-------TRTTSSRDCRPASFTSTRPWTP 213 R+ +A +ST +S RA P TRT + R T PW P Sbjct: 191 RSASARTGRST----SSCARAARAPSATEGALTRTPAPRRPLQRRRPGTGPWRP 240
>ADIA_ECOLI (P28629) Biodegradative arginine decarboxylase (EC 4.1.1.19) (ADC)| Length = 755 Score = 31.2 bits (69), Expect = 2.8 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Frame = -3 Query: 447 TMTNVKLNRERHVQRH---GKRMPRQGDQLPRSHAHSSGLVVEEHTAEIEQLAASNDPAD 277 T+ N + +RH + + MP +Q P ++A+ + + L +N A Sbjct: 593 TLVNTLCSFKRHYDANTPLAQVMPELVEQYPDTYANMG--IHDLGDTMFAWLKENNPGAR 650 Query: 276 ENHFVSGLQASKLHIDPALDAVA*NCVDHLRGAAACEDSL*YGLIIVGEVAANGVAHYPP 97 N SGL +++ A +A+ N V+ + E+ + G +AAN V YPP Sbjct: 651 LNEAYSGLPVAEVTPREAYNAIVDNNVE----LVSIEN-------LPGRIAANSVIPYPP 699 Query: 96 GVLFIL 79 G+ +L Sbjct: 700 GIPMLL 705
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 30.8 bits (68), Expect = 3.6 Identities = 33/112 (29%), Positives = 50/112 (44%) Frame = -1 Query: 548 SNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLAKGTS 369 + S ++ T +P P+ L ++SPLT S VS S T S T+ Sbjct: 1394 TTSTPISSTPQPTSSPT--TLPTTSPLTSSATSPTTSHITSTVSPTTSPTTS------TT 1445 Query: 368 SPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 213 SP T +P S +T P +++ + P+ TTS+ P+ TST TP Sbjct: 1446 SP--TTSPTTS---TTSPTTST---TSPTPSPTTSTTSPTPSPTTSTTSPTP 1489
>MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS| Length = 892 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -3 Query: 339 LVVEEHTAEIEQLAASNDPADENHFVSGLQASKLHIDPALDA 214 +VV+E EIE+ N+ + F Q+SK PALDA Sbjct: 815 IVVKEEPIEIEETKVDNEEESQLSFFGAEQSSKKQDKPALDA 856
>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)| Length = 567 Score = 30.8 bits (68), Expect = 3.6 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 5/137 (3%) Frame = -1 Query: 551 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLAKGT 372 TS+S + T T + ++SSS + S +S S T S+ + T Sbjct: 320 TSSSTTTTTTT------TSTTISSSSSSSKTSKTSTTSTTSSSISSTTSSTTSSTSSSST 373 Query: 371 SSPGRTRTPAASL*K-----STQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLL 207 SS + T +++ ST P S++ L ++ + T ++S S +T TP Sbjct: 374 SSSTSSTTSSSTTSSQISTTSTAPTSSTSLSSSTISTSASTSDTTSVTSSETTPVVTPSS 433 Query: 206 RTA*ITSAGPQRVRTVS 156 ++ IT G +S Sbjct: 434 LSSAITIPGDSTTTGIS 450
>2A5D_YEAST (P38903) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit delta isoform (PP2A, B subunit, B' delta isoform) (Protein RTS1) (Protein SCS1) Length = 757 Score = 30.8 bits (68), Expect = 3.6 Identities = 29/121 (23%), Positives = 51/121 (42%) Frame = -1 Query: 584 STKGYSDHKIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCS 405 S+K K +S + + +++P A +SSS T + G S Sbjct: 21 SSKKKDKEKEKEKSSTTSSTSKKP------ASASSSSHGTTHSSASSTGSKSTTEKGKQS 74 Query: 404 GTASACLAKGTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTR 225 G+ + +SS +T+T S+ +S+S+ R+ T+ TSSR + S S + Sbjct: 75 GSVPSQGKHHSSSTSKTKTATTPSSSSSSSRSSSVSRSGSSSTKKTSSRKGQEQSKQSQQ 134 Query: 224 P 222 P Sbjct: 135 P 135
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 30.4 bits (67), Expect = 4.7 Identities = 36/137 (26%), Positives = 50/137 (36%), Gaps = 2/137 (1%) Frame = -1 Query: 551 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXSIVSGMCSGTASACLAKGT 372 T+++ S TPT S++P T S T++ T Sbjct: 181 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTT----------STTSTTPTTSTT 230 Query: 371 SSPGRTRTPAASL*KSTQPKSNSL-LRATILPTRTTSSRDCRP-ASFTSTRPWTPLLRTA 198 + T T + + KST P ++S T T TTS+ P S TST T + TA Sbjct: 231 PTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTA 290 Query: 197 *ITSAGPQRVRTVSDMA 147 TS T S A Sbjct: 291 PTTSTTSSTFSTSSASA 307
>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger protein A20) Length = 790 Score = 30.4 bits (67), Expect = 4.7 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Frame = -2 Query: 385 SPRGPAPQVARALQRPRCRRAHSRNRTACCEQR---SCRREPLRLGTAGQQASHRP 227 S R P+ ++ RP+C RA +N AC + C+ R+G + P Sbjct: 699 SQRRDVPRTTQSTSRPKCARASCKNILACRSEELCMECQHPNQRMGPGAHRGEPAP 754
>AL1A1_HORSE (P15437) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 30.0 bits (66), Expect = 6.2 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 13/150 (8%) Frame = +1 Query: 16 YGPIVFNLDLHDGTRGQA----DEEEDEKNTGRIVCDAIGGDFSNYNKAISETVLTRCGP 183 Y I N + HD G+ + +EK +C+ GD + NKA++ + Sbjct: 19 YTKIFINNEWHDSVSGKKFPVFNPATEEK-----LCEVEEGDKEDVNKAVAAA--RQAFQ 71 Query: 184 AEVIYAVLSNGVQGRVDVKLAGLQSRDEVVLV-------GRIVARSKLFDF-GCVLFYNE 339 + + +GR+ KLA L RD ++L G++ + + L D GC+ Sbjct: 72 IGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRY 131 Query: 340 AAGVRVR-PGELVPLARHALAVPLHMPLTI 426 AG + G +P + H P+ + Sbjct: 132 CAGWADKIQGRTIPSDGNFFTYTRHEPVGV 161
>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) Length = 790 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -2 Query: 385 SPRGPAPQVARALQRPRCRRAHSRNRTACCEQRSC 281 S R P+ ++ RP+C RA +N AC + C Sbjct: 699 SQRRDVPRTTQSTSRPKCARASCKNILACRSEELC 733
>PAP2_YEAST (P53632) Poly(A) RNA polymerase protein 2 (EC 2.7.7.-) (DNA| polymerase sigma) (DNA polymerase kappa) (Topoisomerase 1-related protein TRF4) Length = 584 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/45 (26%), Positives = 27/45 (60%) Frame = -3 Query: 438 NVKLNRERHVQRHGKRMPRQGDQLPRSHAHSSGLVVEEHTAEIEQ 304 ++ LN E V+ R ++ ++LP+ H + G++V EH ++ ++ Sbjct: 37 SISLNDENEVEILPSRNEQETNKLPKDHVTADGILVLEHKSDDDE 81
>YHCR_BACSU (P54602) Endonuclease yhcR precursor (EC 3.1.31.-)| Length = 1217 Score = 30.0 bits (66), Expect = 6.2 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 18/94 (19%) Frame = +1 Query: 328 FYNEAAGVRVRPGELVPLARHALAVPLHMPLT------------------IELDIRHGGS 453 F +EA V EL A+AV HM E+D+ Sbjct: 765 FTDEATAVNKAAEELKKKGVKAIAVLAHMSAEQNGNAITGESADLANKTDSEIDVIFAAH 824 Query: 454 GDEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVT 555 ++V GE+ K + G+ +GV D E + T Sbjct: 825 NHQVVNGEVNGKLIVQAFEYGKAIGVVDVEIDKT 858
>DCOR_HAEIN (P44317) Ornithine decarboxylase (EC 4.1.1.17)| Length = 720 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -3 Query: 141 IVGEVAANGVAHYPPGVLFIL 79 IVG VAA G YPPGVL ++ Sbjct: 647 IVGRVAAEGALPYPPGVLCVV 667
>NAK_ARATH (P43293) Probable serine/threonine-protein kinase NAK (EC 2.7.11.1)| Length = 389 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +1 Query: 133 SNYNKAISETVLTRCGPAEVIYAVLSNGVQGRVDVKLAGLQ--SRDEVVLVGRIVARSKL 306 SNYN +S+ L R GP G V ++ G Q + E + G + +S + Sbjct: 213 SNYNAKLSDFGLARDGPM---------GDNSHVSTRVMGTQGYAAPEYLATGHLSVKSDV 263 Query: 307 FDFGCVL 327 + FG VL Sbjct: 264 YSFGVVL 270
>TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylammeline| chlorohydrolase) Length = 476 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -1 Query: 401 TASACLAKGTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRP 222 T+++ K ++ PG +PA+S T KS+S + P TSS C S ++ P Sbjct: 40 TSTSAAPKSSTPPGWQCSPASSTPTPTSHKSSS---GVVHPMTATSSNGCTTCSIPASLP 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,138,630 Number of Sequences: 219361 Number of extensions: 1972609 Number of successful extensions: 6798 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 6463 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6786 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
