Clone Information

BLAST Search Result

Clone Name	bags7b10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_469026.1\| Oryza sativa (japonica cultivar-group), mRNA	523	e-145
2	dbj\|AK100923.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	515	e-143
3	ref\|XM_469025.1\| Oryza sativa (japonica cultivar-group), mRNA	505	e-140
4	gb\|AC145381.4\| Oryza sativa (japonica cultivar-group) chromosome...	337	2e-89
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	337	2e-89
6	gb\|AC138001.2\| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genom...	337	2e-89
7	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	337	2e-89
8	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	50	0.008
9	ref\|XM_652929.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	48	0.030
10	ref\|XM_469027.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.47
11	gb\|AC100378.10\| Mus musculus chromosome 10, clone RP23-130O4, co...	42	1.9
12	gb\|AC129012.4\| Mus musculus BAC clone RP24-545L10 from chromosom...	42	1.9
13	gb\|AC016839.12\| Homo sapiens chromosome 18, clone RP11-399L5, co...	42	1.9
14	emb\|AL833796.4\| Mouse DNA sequence from clone RP23-361A12 on chr...	42	1.9
15	ref\|XM_475900.1\| Oryza sativa (japonica cultivar-group), predic...	40	7.4
16	gb\|AC104709.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.4
17	gb\|CP000285.1\| Chromohalobacter salexigens DSM 3043, complete ge...	40	7.4
18	gb\|AC139377.4\| Mus musculus chromosome 5 clone RP24-291G12, comp...	40	7.4
19	gb\|AY356314.1\| Solanum tuberosum L362 gene, complete sequence	40	7.4
20	ref\|XM_446033.1\| Candida glabrata CBS138, CAGL0F01419g partial mRNA	40	7.4
21	gb\|AC132118.3\| Mus musculus BAC clone RP23-467C14 from chromosom...	40	7.4
22	gb\|AC116120.6\| Mus musculus chromosome 6, clone RP23-78P7, compl...	40	7.4
23	emb\|CR376731.13\| Zebrafish DNA sequence from clone DKEY-117K10 i...	40	7.4
24	emb\|Z93942.1\|HS230I19 Human DNA sequence from clone RP1-230I19 o...	40	7.4
25	emb\|X87331.1\|SCXV58KB S.cerevisiae genomic DNA (chromosome XV; s...	40	7.4
26	emb\|CR380952.1\| Candida glabrata strain CBS138 chromosome F comp...	40	7.4
27	emb\|BX842650.1\| Bdellovibrio bacteriovorus complete genome, stra...	40	7.4
28	gb\|AC153582.10\| Mus musculus 6 BAC RP23-432M19 (Roswell Park Can...	40	7.4
29	emb\|BX530079.19\| Zebrafish DNA sequence from clone DKEY-51A16 in...	40	7.4
30	gb\|AC090639.6\| Homo sapiens chromosome 11, clone RP11-1114G3, co...	40	7.4
31	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	7.4
32	gb\|AC156279.5\| Mus musculus 6 BAC RP24-244D20 (Roswell Park Canc...	40	7.4
33	gb\|AC158999.2\| Mus musculus BAC clone RP24-201N16 from chromosom...	40	7.4
34	emb\|BX323883.14\| Zebrafish DNA sequence from clone CH211-285M21 ...	40	7.4
35	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.4
36	gb\|AY253339.1\| Sus scrofa UDP-Gal:beta-GlcNAc beta 1,4-galactosy...	40	7.4
37	gb\|AC084452.1\|AC084452 Caenorhabditis briggsae cosmid CB024D21, ...	40	7.4
38	dbj\|AK069566.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.4
39	gb\|AC153838.6\| Mus musculus 6 BAC RP23-82B24 (Roswell Park Cance...	40	7.4
40	emb\|Z74920.1\|SCYOR012W S.cerevisiae chromosome XV reading frame ...	40	7.4
41	emb\|Z74919.1\|SCYOR011W S.cerevisiae chromosome XV reading frame ...	40	7.4
42	emb\|AL807245.17\| Mouse DNA sequence from clone RP23-102B2 on chr...	40	7.4

>ref|XM_469026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3574

 Score =  523 bits (264), Expect = e-145
 Identities = 443/503 (88%)
 Strand = Plus / Plus

                                                                       
Query: 45  ccggcggcgcgcccgagatgcgccccaacatcgtcacggaggctgggatttcaactaggt 104
           |||| |||| |||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 208 ccggaggcgagcccgagatgcggcccaacgtcatcacggaggctgggatttcaactaggt 267

                                                                       
Query: 105 tgaaccagtggtggagcagcaccccgttcattacttccggcgttaccataatatgtgcgg 164
           |||| ||||||||| ||||||  || |||||||| ||||| |||| | | |||||||  |
Sbjct: 268 tgaatcagtggtggggcagcataccattcattacatccggtgttatcttgatatgtggag 327

                                                                       
Query: 165 cgatatatntggtgtgcttgttgattggatatgactcctatgccgagatatgcttcttgc 224
           |||| ||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 328 cgatttatctggtgtgcttgttgactggctatgactcctttgccgagatatgcttcttgc 387

                                                                       
Query: 225 cttctgcagtggcctcgcattttcaagtgtacagattctacacatctgttctgtttcatg 284
           |||||| ||| || || |  |||||||||||||| ||||| ||||||||| | |||||||
Sbjct: 388 cttctgtagtagcatcacgctttcaagtgtacaggttctatacatctgttgtatttcatg 447

                                                                       
Query: 285 gctctttgcttcatgtgctattcaacatgctgacctttgtacccttggggactgagttgg 344
           | |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 448 gttctttgcttcatgtgctattcaacatgctggccttggtacccttgggcactgagttgg 507

                                                                       
Query: 345 agagaattatgggatcagtccgtctcttgttcctgatgttccttcttgcaacgactaatg 404
           | |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||
Sbjct: 508 aaagaattatgggatcagtccgtctcttgttcttgatgtttcttcttgctacgactaatg 567

                                                                       
Query: 405 caattttccatctcatcgttgccttcttggtggattacaatcctttataccatgtctcat 464
           | ||||| ||||||||| |||| ||||||| || |||||||||  | || | | ||   |
Sbjct: 568 cgatttttcatctcatcattgctttcttggcggcttacaatccgctctatcctctccact 627

                                                                       
Query: 465 atcttgtggatgaatgttcgattggcttttctggagttatattctcaatgatagtcattg 524
            ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 628 ttcttgtggatgaatgctccattggcttttctggagttatattctcaatgattgtcattg 687

                                  
Query: 525 agacaagcctgagtggagtgcaa 547
           |||||||||||||||| ||||||
Sbjct: 688 agacaagcctgagtggggtgcaa 710

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>dbj|AK100923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P16, full
           insert sequence
          Length = 3574

 Score =  515 bits (260), Expect = e-143
 Identities = 442/503 (87%)
 Strand = Plus / Plus

                                                                       
Query: 45  ccggcggcgcgcccgagatgcgccccaacatcgtcacggaggctgggatttcaactaggt 104
           |||| |||| |||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 208 ccggaggcgagcccgagatgcggcccaacgtcatcacggaggctgggatttcaactaggt 267

                                                                       
Query: 105 tgaaccagtggtggagcagcaccccgttcattacttccggcgttaccataatatgtgcgg 164
           |||| ||||||||| ||||||  || |||||||| ||||| |||| | | |||||||  |
Sbjct: 268 tgaatcagtggtggggcagcataccattcattacatccggtgttatcttgatatgtggag 327

                                                                       
Query: 165 cgatatatntggtgtgcttgttgattggatatgactcctatgccgagatatgcttcttgc 224
           |||| ||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 328 cgatttatctggtgtgcttgttgactggctatgactcctttgccgagatatgcttcttgc 387

                                                                       
Query: 225 cttctgcagtggcctcgcattttcaagtgtacagattctacacatctgttctgtttcatg 284
           |||||| ||| || || |  |||||||||||||| ||||| ||||||||| | |||||||
Sbjct: 388 cttctgtagtagcatcacgctttcaagtgtacaggttctatacatctgttgtatttcatg 447

                                                                       
Query: 285 gctctttgcttcatgtgctattcaacatgctgacctttgtacccttggggactgagttgg 344
           | |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 448 gttctttgcttcatgtgctattcaacatgctggccttggtacccttgggcactgagttgg 507

                                                                       
Query: 345 agagaattatgggatcagtccgtctcttgttcctgatgttccttcttgcaacgactaatg 404
           | |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||
Sbjct: 508 aaagaattatgggatcagtccgtctcttgttcttgatgtttcttcttgctacgactaatg 567

                                                                       
Query: 405 caattttccatctcatcgttgccttcttggtggattacaatcctttataccatgtctcat 464
           | ||||| ||||||||| |||| ||||||| || |||||||||  | || | | ||   |
Sbjct: 568 cgatttttcatctcatcattgctttcttggcggcttacaatccgctctatcctctccact 627

                                                                       
Query: 465 atcttgtggatgaatgttcgattggcttttctggagttatattctcaatgatagtcattg 524
            ||||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||
Sbjct: 628 ttcttgtggatgaatgctccattggcttttctggagttatattctcagtgattgtcattg 687

                                  
Query: 525 agacaagcctgagtggagtgcaa 547
           |||||||||||||||| ||||||
Sbjct: 688 agacaagcctgagtggggtgcaa 710

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>ref|XM_469025.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1508

 Score =  505 bits (255), Expect = e-140
 Identities = 428/486 (88%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgcgccccaacatcgtcacggaggctgggatttcaactaggttgaaccagtggtggagc 121
           ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 1   atgcggcccaacgtcatcacggaggctgggatttcaactaggttgaatcagtggtggggc 60

                                                                       
Query: 122 agcaccccgttcattacttccggcgttaccataatatgtgcggcgatatatntggtgtgc 181
           ||||  || |||||||| ||||| |||| | | |||||||  ||||| ||| ||||||||
Sbjct: 61  agcataccattcattacatccggtgttatcttgatatgtggagcgatttatctggtgtgc 120

                                                                       
Query: 182 ttgttgattggatatgactcctatgccgagatatgcttcttgccttctgcagtggcctcg 241
           ||||||| ||| |||||||||| |||||||||||||||||||||||||| ||| || || 
Sbjct: 121 ttgttgactggctatgactcctttgccgagatatgcttcttgccttctgtagtagcatca 180

                                                                       
Query: 242 cattttcaagtgtacagattctacacatctgttctgtttcatggctctttgcttcatgtg 301
           |  |||||||||||||| ||||| ||||||||| | |||||||| |||||||||||||||
Sbjct: 181 cgctttcaagtgtacaggttctatacatctgttgtatttcatggttctttgcttcatgtg 240

                                                                       
Query: 302 ctattcaacatgctgacctttgtacccttggggactgagttggagagaattatgggatca 361
           ||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 241 ctattcaacatgctggccttggtacccttgggcactgagttggaaagaattatgggatca 300

                                                                       
Query: 362 gtccgtctcttgttcctgatgttccttcttgcaacgactaatgcaattttccatctcatc 421
           ||||||||||||||| ||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct: 301 gtccgtctcttgttcttgatgtttcttcttgctacgactaatgcgatttttcatctcatc 360

                                                                       
Query: 422 gttgccttcttggtggattacaatcctttataccatgtctcatatcttgtggatgaatgt 481
            |||| ||||||| || |||||||||  | || | | ||   | ||||||||||||||| 
Sbjct: 361 attgctttcttggcggcttacaatccgctctatcctctccactttcttgtggatgaatgc 420

                                                                       
Query: 482 tcgattggcttttctggagttatattctcaatgatagtcattgagacaagcctgagtgga 541
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 421 tccattggcttttctggagttatattctcaatgattgtcattgagacaagcctgagtggg 480

                 
Query: 542 gtgcaa 547
           ||||||
Sbjct: 481 gtgcaa 486

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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17
              map near S16403, complete sequence
          Length = 172238

 Score =  337 bits (170), Expect = 2e-89
 Identities = 266/298 (89%)
 Strand = Plus / Minus

                                                                          
Query: 250    agtgtacagattctacacatctgttctgtttcatggctctttgcttcatgtgctattcaa 309
              ||||||||| ||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 115002 agtgtacaggttctatacatctgttgtatttcatggttctttgcttcatgtgctattcaa 114943

                                                                          
Query: 310    catgctgacctttgtacccttggggactgagttggagagaattatgggatcagtccgtct 369
              ||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 114942 catgctggccttggtacccttgggcactgagttggaaagaattatgggatcagtccgtct 114883

                                                                          
Query: 370    cttgttcctgatgttccttcttgcaacgactaatgcaattttccatctcatcgttgcctt 429
              ||||||| ||||||| |||||||| ||||||||||| ||||| ||||||||| |||| ||
Sbjct: 114882 cttgttcttgatgtttcttcttgctacgactaatgcgatttttcatctcatcattgcttt 114823

                                                                          
Query: 430    cttggtggattacaatcctttataccatgtctcatatcttgtggatgaatgttcgattgg 489
              ||||| || |||||||||  | || | | ||   | ||||||||||||||| || |||||
Sbjct: 114822 cttggcggcttacaatccgctctatcctctccactttcttgtggatgaatgctccattgg 114763

                                                                        
Query: 490    cttttctggagttatattctcaatgatagtcattgagacaagcctgagtggagtgcaa 547
              ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 114762 cttttctggagttatattctcaatgattgtcattgagacaagcctgagtggggtgcaa 114705



 Score =  159 bits (80), Expect = 1e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                          
Query: 84     aggctgggatttcaactaggttgaaccagtggtggagcagcaccccgttcattacttccg 143
              ||||||||||||||||||||||||| ||||||||| ||||||  || |||||||| ||||
Sbjct: 115666 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 115607

                                                                          
Query: 144    gcgttaccataatatgtgcggcgatatatntggtgtgcttgttgattggatatgactcct 203
              | |||| | | |||||||  ||||| ||| ||||||||||||||| ||| ||||||||||
Sbjct: 115606 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 115547

                                         
Query: 204    atgccgagatatgcttcttgccttctg 230
               ||||||||||||||||||||||||||
Sbjct: 115546 ttgccgagatatgcttcttgccttctg 115520



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 45     ccggcggcgcgcccgagatgcgccccaacatcgtcacggagg 86
              |||| |||| |||||||||||| |||||| || |||||||||
Sbjct: 116221 ccggaggcgagcccgagatgcggcccaacgtcatcacggagg 116180

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  337 bits (170), Expect = 2e-89
 Identities = 266/298 (89%)
 Strand = Plus / Minus

                                                                            
Query: 250      agtgtacagattctacacatctgttctgtttcatggctctttgcttcatgtgctattcaa 309
                ||||||||| ||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 24998557 agtgtacaggttctatacatctgttgtatttcatggttctttgcttcatgtgctattcaa 24998498

                                                                            
Query: 310      catgctgacctttgtacccttggggactgagttggagagaattatgggatcagtccgtct 369
                ||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 24998497 catgctggccttggtacccttgggcactgagttggaaagaattatgggatcagtccgtct 24998438

                                                                            
Query: 370      cttgttcctgatgttccttcttgcaacgactaatgcaattttccatctcatcgttgcctt 429
                ||||||| ||||||| |||||||| ||||||||||| ||||| ||||||||| |||| ||
Sbjct: 24998437 cttgttcttgatgtttcttcttgctacgactaatgcgatttttcatctcatcattgcttt 24998378

                                                                            
Query: 430      cttggtggattacaatcctttataccatgtctcatatcttgtggatgaatgttcgattgg 489
                ||||| || |||||||||  | || | | ||   | ||||||||||||||| || |||||
Sbjct: 24998377 cttggcggcttacaatccgctctatcctctccactttcttgtggatgaatgctccattgg 24998318

                                                                          
Query: 490      cttttctggagttatattctcaatgatagtcattgagacaagcctgagtggagtgcaa 547
                ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 24998317 cttttctggagttatattctcaatgattgtcattgagacaagcctgagtggggtgcaa 24998260



 Score =  159 bits (80), Expect = 1e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                            
Query: 84       aggctgggatttcaactaggttgaaccagtggtggagcagcaccccgttcattacttccg 143
                ||||||||||||||||||||||||| ||||||||| ||||||  || |||||||| ||||
Sbjct: 24999221 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 24999162

                                                                            
Query: 144      gcgttaccataatatgtgcggcgatatatntggtgtgcttgttgattggatatgactcct 203
                | |||| | | |||||||  ||||| ||| ||||||||||||||| ||| ||||||||||
Sbjct: 24999161 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 24999102

                                           
Query: 204      atgccgagatatgcttcttgccttctg 230
                 ||||||||||||||||||||||||||
Sbjct: 24999101 ttgccgagatatgcttcttgccttctg 24999075



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 45       ccggcggcgcgcccgagatgcgccccaacatcgtcacggagg 86
                |||| |||| |||||||||||| |||||| || |||||||||
Sbjct: 24999776 ccggaggcgagcccgagatgcggcccaacgtcatcacggagg 24999735

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>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score =  337 bits (170), Expect = 2e-89
 Identities = 266/298 (89%)
 Strand = Plus / Minus

                                                                         
Query: 250   agtgtacagattctacacatctgttctgtttcatggctctttgcttcatgtgctattcaa 309
             ||||||||| ||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 30364 agtgtacaggttctatacatctgttgtatttcatggttctttgcttcatgtgctattcaa 30305

                                                                         
Query: 310   catgctgacctttgtacccttggggactgagttggagagaattatgggatcagtccgtct 369
             ||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 30304 catgctggccttggtacccttgggcactgagttggaaagaattatgggatcagtccgtct 30245

                                                                         
Query: 370   cttgttcctgatgttccttcttgcaacgactaatgcaattttccatctcatcgttgcctt 429
             ||||||| ||||||| |||||||| ||||||||||| ||||| ||||||||| |||| ||
Sbjct: 30244 cttgttcttgatgtttcttcttgctacgactaatgcgatttttcatctcatcattgcttt 30185

                                                                         
Query: 430   cttggtggattacaatcctttataccatgtctcatatcttgtggatgaatgttcgattgg 489
             ||||| || |||||||||  | || | | ||   | ||||||||||||||| || |||||
Sbjct: 30184 cttggcggcttacaatccgctctatcctctccactttcttgtggatgaatgctccattgg 30125

                                                                       
Query: 490   cttttctggagttatattctcaatgatagtcattgagacaagcctgagtggagtgcaa 547
             ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 30124 cttttctggagttatattctcaatgattgtcattgagacaagcctgagtggggtgcaa 30067



 Score =  159 bits (80), Expect = 1e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                         
Query: 84    aggctgggatttcaactaggttgaaccagtggtggagcagcaccccgttcattacttccg 143
             ||||||||||||||||||||||||| ||||||||| ||||||  || |||||||| ||||
Sbjct: 31028 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 30969

                                                                         
Query: 144   gcgttaccataatatgtgcggcgatatatntggtgtgcttgttgattggatatgactcct 203
             | |||| | | |||||||  ||||| ||| ||||||||||||||| ||| ||||||||||
Sbjct: 30968 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 30909

                                        
Query: 204   atgccgagatatgcttcttgccttctg 230
              ||||||||||||||||||||||||||
Sbjct: 30908 ttgccgagatatgcttcttgccttctg 30882



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 45    ccggcggcgcgcccgagatgcgccccaacatcgtcacggagg 86
             |||| |||| |||||||||||| |||||| || |||||||||
Sbjct: 31583 ccggaggcgagcccgagatgcggcccaacgtcatcacggagg 31542

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  337 bits (170), Expect = 2e-89
 Identities = 266/298 (89%)
 Strand = Plus / Minus

                                                                            
Query: 250      agtgtacagattctacacatctgttctgtttcatggctctttgcttcatgtgctattcaa 309
                ||||||||| ||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 25089874 agtgtacaggttctatacatctgttgtatttcatggttctttgcttcatgtgctattcaa 25089815

                                                                            
Query: 310      catgctgacctttgtacccttggggactgagttggagagaattatgggatcagtccgtct 369
                ||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 25089814 catgctggccttggtacccttgggcactgagttggaaagaattatgggatcagtccgtct 25089755

                                                                            
Query: 370      cttgttcctgatgttccttcttgcaacgactaatgcaattttccatctcatcgttgcctt 429
                ||||||| ||||||| |||||||| ||||||||||| ||||| ||||||||| |||| ||
Sbjct: 25089754 cttgttcttgatgtttcttcttgctacgactaatgcgatttttcatctcatcattgcttt 25089695

                                                                            
Query: 430      cttggtggattacaatcctttataccatgtctcatatcttgtggatgaatgttcgattgg 489
                ||||| || |||||||||  | || | | ||   | ||||||||||||||| || |||||
Sbjct: 25089694 cttggcggcttacaatccgctctatcctctccactttcttgtggatgaatgctccattgg 25089635

                                                                          
Query: 490      cttttctggagttatattctcaatgatagtcattgagacaagcctgagtggagtgcaa 547
                ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 25089634 cttttctggagttatattctcaatgattgtcattgagacaagcctgagtggggtgcaa 25089577



 Score =  159 bits (80), Expect = 1e-35
 Identities = 130/147 (88%)
 Strand = Plus / Minus

                                                                            
Query: 84       aggctgggatttcaactaggttgaaccagtggtggagcagcaccccgttcattacttccg 143
                ||||||||||||||||||||||||| ||||||||| ||||||  || |||||||| ||||
Sbjct: 25090538 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 25090479

                                                                            
Query: 144      gcgttaccataatatgtgcggcgatatatntggtgtgcttgttgattggatatgactcct 203
                | |||| | | |||||||  ||||| ||| ||||||||||||||| ||| ||||||||||
Sbjct: 25090478 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 25090419

                                           
Query: 204      atgccgagatatgcttcttgccttctg 230
                 ||||||||||||||||||||||||||
Sbjct: 25090418 ttgccgagatatgcttcttgccttctg 25090392



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 45       ccggcggcgcgcccgagatgcgccccaacatcgtcacggagg 86
                |||| |||| |||||||||||| |||||| || |||||||||
Sbjct: 25091093 ccggaggcgagcccgagatgcggcccaacgtcatcacggagg 25091052

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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 27      ccggcggagccaccagcaccggcggcgcg 55
               ||||||||||||||| |||||||||||||
Sbjct: 3551446 ccggcggagccaccaccaccggcggcgcg 3551474

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>ref|XM_652929.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0417.2), mRNA
          Length = 753

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 32  ggagccaccagcaccggcggcgcg 55
           ||||||||||||||||||||||||
Sbjct: 228 ggagccaccagcaccggcggcgcg 205

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>ref|XM_469027.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 45  ccggcggcgcgcccgagatgcgccccaacatcgtcacggagg 86
           |||| |||| |||||||||||| |||||| || |||||||||
Sbjct: 109 ccggaggcgagcccgagatgcggcccaacgtcatcacggagg 68

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>gb|AC100378.10| Mus musculus chromosome 10, clone RP23-130O4, complete sequence
          Length = 218363

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 458 gtctcatatcttgtggatgaa 478
           |||||||||||||||||||||
Sbjct: 398 gtctcatatcttgtggatgaa 418

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>gb|AC129012.4| Mus musculus BAC clone RP24-545L10 from chromosome 10, complete
             sequence
          Length = 143029

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 458   gtctcatatcttgtggatgaa 478
             |||||||||||||||||||||
Sbjct: 65899 gtctcatatcttgtggatgaa 65879

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>gb|AC016839.12| Homo sapiens chromosome 18, clone RP11-399L5, complete sequence
          Length = 152689

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 260   ttctacacatctgttctgttt 280
             |||||||||||||||||||||
Sbjct: 93866 ttctacacatctgttctgttt 93886

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>emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chromosome X, complete
              sequence
          Length = 160626

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    gagatatgcttcttgccttct 229
              |||||||||||||||||||||
Sbjct: 136306 gagatatgcttcttgccttct 136286

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>ref|XM_475900.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 30   gcggagccaccagcaccggcggcg 53
            ||||||||||| ||||||||||||
Sbjct: 1628 gcggagccaccggcaccggcggcg 1605

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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
              complete sequence
          Length = 144601

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     gcggagccaccagcaccggcggcg 53
              ||||||||||| ||||||||||||
Sbjct: 100558 gcggagccaccggcaccggcggcg 100581

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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 36      ccaccagcaccggcggcgcg 55
               ||||||||||||||||||||
Sbjct: 1720039 ccaccagcaccggcggcgcg 1720020

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>gb|AC139377.4| Mus musculus chromosome 5 clone RP24-291G12, complete sequence
          Length = 191100

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 518    gtcattgagacaagcctgag 537
              ||||||||||||||||||||
Sbjct: 181589 gtcattgagacaagcctgag 181608

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>gb|AY356314.1| Solanum tuberosum L362 gene, complete sequence
          Length = 6730

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  atgcttcttgccttctgcag 233
            ||||||||||||||||||||
Sbjct: 6274 atgcttcttgccttctgcag 6255

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>ref|XM_446033.1| Candida glabrata CBS138, CAGL0F01419g partial mRNA
          Length = 4197

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  ttctgtttcatggctctttg 292
            ||||||||||||||||||||
Sbjct: 3355 ttctgtttcatggctctttg 3374

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>gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosome 5, complete sequence
          Length = 175070

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   gtcattgagacaagcctgag 537
             ||||||||||||||||||||
Sbjct: 36807 gtcattgagacaagcctgag 36826

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>gb|AC116120.6| Mus musculus chromosome 6, clone RP23-78P7, complete sequence
          Length = 174411

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gtctcttgttcctgatgttc 385
             ||||||||||||||||||||
Sbjct: 90451 gtctcttgttcctgatgttc 90470

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>emb|CR376731.13| Zebrafish DNA sequence from clone DKEY-117K10 in linkage group 8,
             complete sequence
          Length = 130762

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   ttgagacaagcctgagtgga 541
             ||||||||||||||||||||
Sbjct: 38639 ttgagacaagcctgagtgga 38658

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>emb|Z93942.1|HS230I19 Human DNA sequence from clone RP1-230I19 on chromosome 20q12-13.12
             Contains part of the PTPRT gene for protein tyrosine
             phosphatase receptor type T,  genomic marker D20S858, a ca
             repeat polymorphism, ESTs, STS and GSSs, complete sequence
          Length = 144201

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 506   ttctcaatgatagtcattgagaca 529
             ||||||||||||||||||| ||||
Sbjct: 42776 ttctcaatgatagtcattgtgaca 42753

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>emb|X87331.1|SCXV58KB S.cerevisiae genomic DNA (chromosome XV; strain FY1679)
          Length = 57619

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  ttctgtttcatggctctttg 292
            ||||||||||||||||||||
Sbjct: 2284 ttctgtttcatggctctttg 2303

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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    ttctgtttcatggctctttg 292
              ||||||||||||||||||||
Sbjct: 143465 ttctgtttcatggctctttg 143446

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>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     agccaccagcaccggcggcg 53
              ||||||||||||||||||||
Sbjct: 278385 agccaccagcaccggcggcg 278366

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>gb|AC153582.10| Mus musculus 6 BAC RP23-432M19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204239

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    gtctcttgttcctgatgttc 385
              ||||||||||||||||||||
Sbjct: 127933 gtctcttgttcctgatgttc 127914



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   gtctcttgttcctgatgttc 385
             ||||||||||||||||||||
Sbjct: 88781 gtctcttgttcctgatgttc 88762

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>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13,
            complete sequence
          Length = 166397

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  cattttcaagtgtacagatt 261
            ||||||||||||||||||||
Sbjct: 4375 cattttcaagtgtacagatt 4394

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>gb|AC090639.6| Homo sapiens chromosome 11, clone RP11-1114G3, complete sequence
          Length = 139604

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   tttctggagttatattctca 511
             ||||||||||||||||||||
Sbjct: 79798 tttctggagttatattctca 79817

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 42      gcaccggcggcgcgcccgag 61
               ||||||||||||||||||||
Sbjct: 3057008 gcaccggcggcgcgcccgag 3056989

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>gb|AC156279.5| Mus musculus 6 BAC RP24-244D20 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 152395

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gtctcttgttcctgatgttc 385
             ||||||||||||||||||||
Sbjct: 77428 gtctcttgttcctgatgttc 77447

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>gb|AC158999.2| Mus musculus BAC clone RP24-201N16 from chromosome 9, complete sequence
          Length = 169860

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    atatgcttcttgccttctgc 231
              ||||||||||||||||||||
Sbjct: 129459 atatgcttcttgccttctgc 129478

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>emb|BX323883.14| Zebrafish DNA sequence from clone CH211-285M21 in linkage group 1,
              complete sequence
          Length = 195250

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    tcttgttcctgatgttcctt 388
              ||||||||||||||||||||
Sbjct: 161671 tcttgttcctgatgttcctt 161690

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 30       gcggagccaccagcaccggcggcg 53
                ||||||||||| ||||||||||||
Sbjct: 27504428 gcggagccaccggcaccggcggcg 27504451

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>gb|AY253339.1| Sus scrofa UDP-Gal:beta-GlcNAc beta 1,4-galactosyltransferase 4
           (B4GALT4) mRNA, partial cds
          Length = 1732

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 gtggattacaatcctttata 453
           ||||||||||||||||||||
Sbjct: 879 gtggattacaatcctttata 898

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>gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, complete sequence
          Length = 93590

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 490  cttttctggagttatattctcaat 513
            |||||||||||| |||||||||||
Sbjct: 7818 cttttctggagtcatattctcaat 7841

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>dbj|AK069566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023J10, full
            insert sequence
          Length = 2349

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 30   gcggagccaccagcaccggcggcg 53
            ||||||||||| ||||||||||||
Sbjct: 1633 gcggagccaccggcaccggcggcg 1610

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>gb|AC153838.6| Mus musculus 6 BAC RP23-82B24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217672

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    gtctcttgttcctgatgttc 385
              ||||||||||||||||||||
Sbjct: 184733 gtctcttgttcctgatgttc 184752



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gtctcttgttcctgatgttc 385
             ||||||||||||||||||||
Sbjct: 16453 gtctcttgttcctgatgttc 16472

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>emb|Z74920.1|SCYOR012W S.cerevisiae chromosome XV reading frame ORF YOR012w
          Length = 6933

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  ttctgtttcatggctctttg 292
            ||||||||||||||||||||
Sbjct: 2284 ttctgtttcatggctctttg 2303

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>emb|Z74919.1|SCYOR011W S.cerevisiae chromosome XV reading frame ORF YOR011w
          Length = 9592

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  ttctgtttcatggctctttg 292
            ||||||||||||||||||||
Sbjct: 6074 ttctgtttcatggctctttg 6093

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>emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chromosome 11, complete
             sequence
          Length = 114581

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   ggactgagttggagagaatt 352
             ||||||||||||||||||||
Sbjct: 39855 ggactgagttggagagaatt 39874


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,456,096
Number of Sequences: 3902068
Number of extensions: 4456096
Number of successful extensions: 97803
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97496
Number of HSP's gapped (non-prelim): 307
length of query: 547
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 524
effective length of database: 17,143,297,704
effective search space: 8983087996896
effective search space used: 8983087996896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result