Clone Information

BLAST Search Result

Clone Name	bags6m04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467831.1\| Oryza sativa (japonica cultivar-group), mRNA	541	e-150
2	dbj\|AK066184.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	541	e-150
3	dbj\|AK062267.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	541	e-150
4	gb\|AY110185.1\| Zea mays CL32627_1 mRNA sequence	262	1e-66
5	gb\|AY108023.1\| Zea mays PCO134970 mRNA sequence	256	8e-65
6	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
7	dbj\|AP004774.3\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
8	dbj\|AP004119.3\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
9	gb\|AC104126.2\| Homo sapiens chromosome 5 clone RP11-526F3, compl...	44	0.58
10	gb\|AC117748.13\| Mus musculus chromosome 5, clone RP24-317A24, co...	42	2.3
11	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	42	2.3
12	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	42	2.3
13	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	2.3
14	gb\|AC010857.8\| Homo sapiens chromosome 8, clone RP11-301G7, comp...	42	2.3
15	gb\|AC083942.8\| Genomic sequence for Oryza sativa, Nipponbare str...	42	2.3
16	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
17	gb\|AY261362.1\| African swine fever virus isolate Mkuzi 1979, com...	42	2.3
18	emb\|AL807744.7\| Mouse DNA sequence from clone RP23-174C4 on chro...	42	2.3
19	gb\|AE001437.1\| Clostridium acetobutylicum ATCC 824, complete genome	42	2.3
20	gb\|CP000002.2\| Bacillus licheniformis ATCC 14580, complete genome	40	9.1
21	ref\|XM_525524.1\| PREDICTED: Pan troglodytes similar to Hypotheti...	40	9.1
22	gb\|CP000141.1\| Carboxydothermus hydrogenoformans Z-2901, complet...	40	9.1
23	gb\|AE017333.1\| Bacillus licheniformis DSM 13, complete genome	40	9.1
24	gb\|AC128597.3\| Rattus norvegicus BAC CH230-62C6 (Children's Hos...	40	9.1
25	gb\|AC112406.5\| Rattus norvegicus 11 BAC CH230-329D3 (Children's ...	40	9.1
26	emb\|BX640442.1\| Bordetella bronchiseptica strain RB50, complete ...	40	9.1
27	emb\|BX640430.1\| Bordetella parapertussis strain 12822, complete ...	40	9.1
28	emb\|BX640417.1\| Bordetella pertussis strain Tohama I, complete g...	40	9.1
29	emb\|BX537106.6\| Zebrafish DNA sequence from clone DKEY-98P3 in l...	40	9.1
30	emb\|AL691490.1\|SPBPB8B6 S.pombe chromosome II BAC pB8B6	40	9.1
31	gb\|AC093550.3\| Drosophila melanogaster 3L BAC RP98-24K7 (Roswell...	40	9.1
32	emb\|BX321902.9\| Zebrafish DNA sequence from clone DKEYP-6E8 in l...	40	9.1
33	gb\|AC087545.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
34	emb\|CR386056.1\| Gallus gallus finished cDNA, clone ChEST216a13	40	9.1
35	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
36	gb\|AC098617.5\| Homo sapiens BAC clone RP11-56I1 from 2, complete...	40	9.1
37	gb\|AC113346.2\| Homo sapiens chromosome 5 clone CTD-2532K18, comp...	40	9.1
38	emb\|BX005104.7\| Zebrafish DNA sequence from clone DKEY-191D13 in...	40	9.1
39	dbj\|AP004132.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
40	dbj\|AP004998.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
41	gb\|AE003549.4\| Drosophila melanogaster chromosome 3L, section 36...	40	9.1
42	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
43	emb\|AL671963.9\| Mouse DNA sequence from clone RP23-35L3 on chrom...	40	9.1

>ref|XM_467831.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1548

 Score =  541 bits (273), Expect = e-150
 Identities = 480/549 (87%)
 Strand = Plus / Plus

                                                                       
Query: 119 aaagaagcagcattatatgagcagcagctgtcaaagattggtgaagttagagctgctcta 178
           |||||||| ||| | | |||||||| ||| || ||||||||||||||||||||||| |||
Sbjct: 183 aaagaagcggcactgtttgagcagcggctatccaagattggtgaagttagagctgcccta 242

                                                                       
Query: 179 ggacaactatctggaaaatctgcactgtattgctcagatggttcaattgcgaggtacctg 238
           ||||||||||| |||||| |||| || ||||||||||||| ||| |||||||||||||||
Sbjct: 243 ggacaactatcaggaaaagctgcgctatattgctcagatgcttcgattgcgaggtacctg 302

                                                                       
Query: 239 atagcaaggaactgggatgtgaggaaggctaccaaaatgcttacaaaaaccttgaaatgg 298
            |||| ||||||||||| |||| |||||| || |||||||| |  |||||||||||||||
Sbjct: 303 gtagcgaggaactgggaagtgaagaaggccacgaaaatgctgaagaaaaccttgaaatgg 362

                                                                       
Query: 299 cgttcagagtataagccagatgagatacgttgggatgagatatcgggtgaagccatgact 358
           |||||||||||||||||||||||||| ||||||||||||||| |    |||||    |||
Sbjct: 363 cgttcagagtataagccagatgagatccgttgggatgagatagcaaacgaagctgcaact 422

                                                                       
Query: 359 ggaaaaatttaccgaagtgatcattttgacaagagtggacggagtattcttgtcatgaga 418
           |||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaaaaatctaccgaactgattactttgacaagagtggacggagtattcttgtcatgaga 482

                                                                       
Query: 419 cctggatgccagaataccaagaagtccaaaggacagatcaggtatttggtatactgtatg 478
           ||||||   ||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 483 cctggagttcagaataccaagaaggccaaggggcagatcagatatttggtatactgtatg 542

                                                                       
Query: 479 gagaatgcaattctaaatcttccagctggacaggatcagatggtttggctcattgatttt 538
           |||||||||||||| ||||||||   ||  |||  |||||||||||||||||||||||||
Sbjct: 543 gagaatgcaattctgaatcttccgcatgaccagagtcagatggtttggctcattgatttt 602

                                                                       
Query: 539 gctggcttcagcttgcctaatgtatcacttctagtgacaaagttaacagcggatgtccta 598
           ||||| |||   ||  ||||  |||||||||  ||||||||||| ||||| |||||||||
Sbjct: 603 gctggattctcattatctaacatatcacttcatgtgacaaagttgacagcagatgtccta 662

                                                                       
Query: 599 caaggtcattatcctgaaagattgggtgtggcaattctttataacgctcccaagtttttt 658
           |||||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct: 663 caaggtcactatcctgaaagattgggtgttgcaattctttacaatgctcctaagtttttt 722

                    
Query: 659 gagtctttc 667
           |||||||||
Sbjct: 723 gagtctttc 731

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>dbj|AK066184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056M21, full
           insert sequence
          Length = 1548

 Score =  541 bits (273), Expect = e-150
 Identities = 480/549 (87%)
 Strand = Plus / Plus

                                                                       
Query: 119 aaagaagcagcattatatgagcagcagctgtcaaagattggtgaagttagagctgctcta 178
           |||||||| ||| | | |||||||| ||| || ||||||||||||||||||||||| |||
Sbjct: 183 aaagaagcggcactgtttgagcagcggctatccaagattggtgaagttagagctgcccta 242

                                                                       
Query: 179 ggacaactatctggaaaatctgcactgtattgctcagatggttcaattgcgaggtacctg 238
           ||||||||||| |||||| |||| || ||||||||||||| ||| |||||||||||||||
Sbjct: 243 ggacaactatcaggaaaagctgcgctatattgctcagatgcttcgattgcgaggtacctg 302

                                                                       
Query: 239 atagcaaggaactgggatgtgaggaaggctaccaaaatgcttacaaaaaccttgaaatgg 298
            |||| ||||||||||| |||| |||||| || |||||||| |  |||||||||||||||
Sbjct: 303 gtagcgaggaactgggaagtgaagaaggccacgaaaatgctgaagaaaaccttgaaatgg 362

                                                                       
Query: 299 cgttcagagtataagccagatgagatacgttgggatgagatatcgggtgaagccatgact 358
           |||||||||||||||||||||||||| ||||||||||||||| |    |||||    |||
Sbjct: 363 cgttcagagtataagccagatgagatccgttgggatgagatagcaaacgaagctgcaact 422

                                                                       
Query: 359 ggaaaaatttaccgaagtgatcattttgacaagagtggacggagtattcttgtcatgaga 418
           |||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaaaaatctaccgaactgattactttgacaagagtggacggagtattcttgtcatgaga 482

                                                                       
Query: 419 cctggatgccagaataccaagaagtccaaaggacagatcaggtatttggtatactgtatg 478
           ||||||   ||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 483 cctggagttcagaataccaagaaggccaaggggcagatcagatatttggtatactgtatg 542

                                                                       
Query: 479 gagaatgcaattctaaatcttccagctggacaggatcagatggtttggctcattgatttt 538
           |||||||||||||| ||||||||   ||  |||  |||||||||||||||||||||||||
Sbjct: 543 gagaatgcaattctgaatcttccgcatgaccagagtcagatggtttggctcattgatttt 602

                                                                       
Query: 539 gctggcttcagcttgcctaatgtatcacttctagtgacaaagttaacagcggatgtccta 598
           ||||| |||   ||  ||||  |||||||||  ||||||||||| ||||| |||||||||
Sbjct: 603 gctggattctcattatctaacatatcacttcatgtgacaaagttgacagcagatgtccta 662

                                                                       
Query: 599 caaggtcattatcctgaaagattgggtgtggcaattctttataacgctcccaagtttttt 658
           |||||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct: 663 caaggtcactatcctgaaagattgggtgttgcaattctttacaatgctcctaagtttttt 722

                    
Query: 659 gagtctttc 667
           |||||||||
Sbjct: 723 gagtctttc 731

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>dbj|AK062267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A02, full
           insert sequence
          Length = 1165

 Score =  541 bits (273), Expect = e-150
 Identities = 480/549 (87%)
 Strand = Plus / Plus

                                                                       
Query: 119 aaagaagcagcattatatgagcagcagctgtcaaagattggtgaagttagagctgctcta 178
           |||||||| ||| | | |||||||| ||| || ||||||||||||||||||||||| |||
Sbjct: 179 aaagaagcggcactgtttgagcagcggctatccaagattggtgaagttagagctgcccta 238

                                                                       
Query: 179 ggacaactatctggaaaatctgcactgtattgctcagatggttcaattgcgaggtacctg 238
           ||||||||||| |||||| |||| || ||||||||||||| ||| |||||||||||||||
Sbjct: 239 ggacaactatcaggaaaagctgcgctatattgctcagatgcttcgattgcgaggtacctg 298

                                                                       
Query: 239 atagcaaggaactgggatgtgaggaaggctaccaaaatgcttacaaaaaccttgaaatgg 298
            |||| ||||||||||| |||| |||||| || |||||||| |  |||||||||||||||
Sbjct: 299 gtagcgaggaactgggaagtgaagaaggccacgaaaatgctgaagaaaaccttgaaatgg 358

                                                                       
Query: 299 cgttcagagtataagccagatgagatacgttgggatgagatatcgggtgaagccatgact 358
           |||||||||||||||||||||||||| ||||||||||||||| |    |||||    |||
Sbjct: 359 cgttcagagtataagccagatgagatccgttgggatgagatagcaaacgaagctgcaact 418

                                                                       
Query: 359 ggaaaaatttaccgaagtgatcattttgacaagagtggacggagtattcttgtcatgaga 418
           |||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggaaaaatctaccgaactgattactttgacaagagtggacggagtattcttgtcatgaga 478

                                                                       
Query: 419 cctggatgccagaataccaagaagtccaaaggacagatcaggtatttggtatactgtatg 478
           ||||||   ||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 479 cctggagttcagaataccaagaaggccaaggggcagatcagatatttggtatactgtatg 538

                                                                       
Query: 479 gagaatgcaattctaaatcttccagctggacaggatcagatggtttggctcattgatttt 538
           |||||||||||||| ||||||||   ||  |||  |||||||||||||||||||||||||
Sbjct: 539 gagaatgcaattctgaatcttccgcatgaccagagtcagatggtttggctcattgatttt 598

                                                                       
Query: 539 gctggcttcagcttgcctaatgtatcacttctagtgacaaagttaacagcggatgtccta 598
           ||||| |||   ||  ||||  |||||||||  ||||||||||| ||||| |||||||||
Sbjct: 599 gctggattctcattatctaacatatcacttcatgtgacaaagttgacagcagatgtccta 658

                                                                       
Query: 599 caaggtcattatcctgaaagattgggtgtggcaattctttataacgctcccaagtttttt 658
           |||||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct: 659 caaggtcactatcctgaaagattgggtgttgcaattctttacaatgctcctaagtttttt 718

                    
Query: 659 gagtctttc 667
           |||||||||
Sbjct: 719 gagtctttc 727

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>gb|AY110185.1| Zea mays CL32627_1 mRNA sequence
          Length = 1224

 Score =  262 bits (132), Expect = 1e-66
 Identities = 289/343 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  aaatggcgttcagagtataagccagatgagatacgttgggatgagatatcgggtgaagcc 352
            |||||||||||||| |||||||||||||| || ||||||||||| ||||| | |||||| 
Sbjct: 1200 aaatggcgttcagaatataagccagatgaaatccgttgggatgacatatctgatgaagcg 1141

                                                                        
Query: 353  atgactggaaaaatttaccgaagtgatcattttgacaagagtggacggagtattcttgtc 412
             | |||||      |||||||| |||| | ||||||||||  || |||||||| ||||||
Sbjct: 1140 gtaactggnnnnncttaccgaactgattactttgacaagatcgggcggagtatccttgtc 1081

                                                                        
Query: 413  atgagacctggatgccagaataccaagaagtccaaaggacagatcaggtatttggtatac 472
            |||||||||||||||||||||||||||||  |||| || ||  ||| ||| ||||| |||
Sbjct: 1080 atgagacctggatgccagaataccaagaatgccaatgggcaagtcaagtacttggtgtac 1021

                                                                        
Query: 473  tgtatggagaatgcaattctaaatcttccagctggacaggatcagatggtttggctcatt 532
            |||||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||
Sbjct: 1020 tgtatggagaatgcaattctaaatctgccacatggtcaggatcagatggtttggctcatt 961

                                                                        
Query: 533  gattttgctggcttcagcttgcctaatgtatcacttctagtgacaaagttaacagcggat 592
            ||||||||||| ||||  ||    ||  | ||| |||  ||||||||| | || || |||
Sbjct: 960  gattttgctggtttcaatttaggcaacttgtcaattcaggtgacaaagatgacggcagat 901

                                                       
Query: 593  gtcctacaaggtcattatcctgaaagattgggtgtggcaattc 635
            ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 900  gtcctacaaggccattatcctgaaaggttgggtgtggcaattc 858

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>gb|AY108023.1| Zea mays PCO134970 mRNA sequence
          Length = 457

 Score =  256 bits (129), Expect = 8e-65
 Identities = 237/273 (86%)
 Strand = Plus / Plus

                                                                       
Query: 107 aatggccatgcgaaagaagcagcattatatgagcagcagctgtcaaagattggtgaagtt 166
           |||| ||||| |||||||||||||   |||||| |||||||||  ||||||||| |||||
Sbjct: 184 aatgtccatgggaaagaagcagcaccgtatgaggagcagctgttcaagattggtaaagtt 243

                                                                       
Query: 167 agagctgctctaggacaactatctggaaaatctgcactgtattgctcagatggttcaatt 226
           ||| |||  ||||||||||||||||||||||| || || ||||||||||||| |||||||
Sbjct: 244 agaactgacctaggacaactatctggaaaatcagctctatattgctcagatgcttcaatt 303

                                                                       
Query: 227 gcgaggtacctgatagcaaggaactgggatgtgaggaaggctaccaaaatgcttacaaaa 286
           || ||||||||||||||||||||||||||  | ||||||||||| |||||||| |  |||
Sbjct: 304 gcaaggtacctgatagcaaggaactgggacataaggaaggctactaaaatgctgaagaaa 363

                                                                       
Query: 287 accttgaaatggcgttcagagtataagccagatgagatacgttgggatgagatatcgggt 346
           ||||| |||||||||||||| |||||||||||||| || ||||||||||| ||||| | |
Sbjct: 364 accttaaaatggcgttcagaatataagccagatgaaatccgttgggatgacatatctgat 423

                                            
Query: 347 gaagccatgactggaaaaatttaccgaagtgat 379
           |||||  | |||||||||| |||||||| ||||
Sbjct: 424 gaagcggtaactggaaaaacttaccgaactgat 456

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  248 bits (125), Expect = 2e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                            
Query: 427      ccagaataccaagaagtccaaaggacagatcaggtatttggtatactgtatggagaatgc 486
                |||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 31624713 ccagaataccaagaaggccaaggggcagatcagatatttggtatactgtatggagaatgc 31624654

                                                                            
Query: 487      aattctaaatcttccagctggacaggatcagatggtttggctcattgattttgctggctt 546
                |||||| ||||||||   ||  |||  |||||||||||||||||||||||||||||| ||
Sbjct: 31624653 aattctgaatcttccgcatgaccagagtcagatggtttggctcattgattttgctggatt 31624594

                                                                            
Query: 547      cagcttgcctaatgtatcacttctagtgacaaagttaacagcggatgtcctacaaggtca 606
                |   ||  ||||  |||||||||  ||||||||||| ||||| |||||||||||||||||
Sbjct: 31624593 ctcattatctaacatatcacttcatgtgacaaagttgacagcagatgtcctacaaggtca 31624534

                                                                            
Query: 607      ttatcctgaaagattgggtgtggcaattctttataacgctcccaagttttttgagtcttt 666
                 |||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct: 31624533 ctatcctgaaagattgggtgttgcaattctttacaatgctcctaagttttttgagtcttt 31624474

                 
Query: 667      c 667
                |
Sbjct: 31624473 c 31624473



 Score =  222 bits (112), Expect = 1e-54
 Identities = 163/180 (90%)
 Strand = Plus / Minus

                                                                            
Query: 153      agattggtgaagttagagctgctctaggacaactatctggaaaatctgcactgtattgct 212
                |||||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||
Sbjct: 31625236 agattggtgaagttagagctgccctaggacaactatcaggaaaagctgcgctatattgct 31625177

                                                                            
Query: 213      cagatggttcaattgcgaggtacctgatagcaaggaactgggatgtgaggaaggctacca 272
                |||||| ||| ||||||||||||||| |||| ||||||||||| |||| |||||| || |
Sbjct: 31625176 cagatgcttcgattgcgaggtacctggtagcgaggaactgggaagtgaagaaggccacga 31625117

                                                                            
Query: 273      aaatgcttacaaaaaccttgaaatggcgttcagagtataagccagatgagatacgttggg 332
                ||||||| |  ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 31625116 aaatgctgaagaaaaccttgaaatggcgttcagagtataagccagatgagatccgttggg 31625057



 Score =  105 bits (53), Expect = 2e-19
 Identities = 65/69 (94%)
 Strand = Plus / Minus

                                                                            
Query: 356      actggaaaaatttaccgaagtgatcattttgacaagagtggacggagtattcttgtcatg 415
                ||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct: 31624882 actggaaaaatctaccgaactgattactttgacaagagtggacggagtattcttgtcatg 31624823

                         
Query: 416      agacctgga 424
                |||||||||
Sbjct: 31624822 agacctgga 31624814



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 436      caagaagtccaaaggacaga 455
                ||||||||||||||||||||
Sbjct: 16926431 caagaagtccaaaggacaga 16926412

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>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0431B06
          Length = 154796

 Score =  248 bits (125), Expect = 2e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                          
Query: 427    ccagaataccaagaagtccaaaggacagatcaggtatttggtatactgtatggagaatgc 486
              |||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 115273 ccagaataccaagaaggccaaggggcagatcagatatttggtatactgtatggagaatgc 115214

                                                                          
Query: 487    aattctaaatcttccagctggacaggatcagatggtttggctcattgattttgctggctt 546
              |||||| ||||||||   ||  |||  |||||||||||||||||||||||||||||| ||
Sbjct: 115213 aattctgaatcttccgcatgaccagagtcagatggtttggctcattgattttgctggatt 115154

                                                                          
Query: 547    cagcttgcctaatgtatcacttctagtgacaaagttaacagcggatgtcctacaaggtca 606
              |   ||  ||||  |||||||||  ||||||||||| ||||| |||||||||||||||||
Sbjct: 115153 ctcattatctaacatatcacttcatgtgacaaagttgacagcagatgtcctacaaggtca 115094

                                                                          
Query: 607    ttatcctgaaagattgggtgtggcaattctttataacgctcccaagttttttgagtcttt 666
               |||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct: 115093 ctatcctgaaagattgggtgttgcaattctttacaatgctcctaagttttttgagtcttt 115034

               
Query: 667    c 667
              |
Sbjct: 115033 c 115033



 Score =  222 bits (112), Expect = 1e-54
 Identities = 163/180 (90%)
 Strand = Plus / Minus

                                                                          
Query: 153    agattggtgaagttagagctgctctaggacaactatctggaaaatctgcactgtattgct 212
              |||||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||
Sbjct: 115796 agattggtgaagttagagctgccctaggacaactatcaggaaaagctgcgctatattgct 115737

                                                                          
Query: 213    cagatggttcaattgcgaggtacctgatagcaaggaactgggatgtgaggaaggctacca 272
              |||||| ||| ||||||||||||||| |||| ||||||||||| |||| |||||| || |
Sbjct: 115736 cagatgcttcgattgcgaggtacctggtagcgaggaactgggaagtgaagaaggccacga 115677

                                                                          
Query: 273    aaatgcttacaaaaaccttgaaatggcgttcagagtataagccagatgagatacgttggg 332
              ||||||| |  ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 115676 aaatgctgaagaaaaccttgaaatggcgttcagagtataagccagatgagatccgttggg 115617



 Score =  105 bits (53), Expect = 2e-19
 Identities = 65/69 (94%)
 Strand = Plus / Minus

                                                                          
Query: 356    actggaaaaatttaccgaagtgatcattttgacaagagtggacggagtattcttgtcatg 415
              ||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct: 115442 actggaaaaatctaccgaactgattactttgacaagagtggacggagtattcttgtcatg 115383

                       
Query: 416    agacctgga 424
              |||||||||
Sbjct: 115382 agacctgga 115374

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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1288_G09
          Length = 109672

 Score =  248 bits (125), Expect = 2e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                        
Query: 427  ccagaataccaagaagtccaaaggacagatcaggtatttggtatactgtatggagaatgc 486
            |||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 4500 ccagaataccaagaaggccaaggggcagatcagatatttggtatactgtatggagaatgc 4441

                                                                        
Query: 487  aattctaaatcttccagctggacaggatcagatggtttggctcattgattttgctggctt 546
            |||||| ||||||||   ||  |||  |||||||||||||||||||||||||||||| ||
Sbjct: 4440 aattctgaatcttccgcatgaccagagtcagatggtttggctcattgattttgctggatt 4381

                                                                        
Query: 547  cagcttgcctaatgtatcacttctagtgacaaagttaacagcggatgtcctacaaggtca 606
            |   ||  ||||  |||||||||  ||||||||||| ||||| |||||||||||||||||
Sbjct: 4380 ctcattatctaacatatcacttcatgtgacaaagttgacagcagatgtcctacaaggtca 4321

                                                                        
Query: 607  ttatcctgaaagattgggtgtggcaattctttataacgctcccaagttttttgagtcttt 666
             |||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct: 4320 ctatcctgaaagattgggtgttgcaattctttacaatgctcctaagttttttgagtcttt 4261

             
Query: 667  c 667
            |
Sbjct: 4260 c 4260



 Score =  222 bits (112), Expect = 1e-54
 Identities = 163/180 (90%)
 Strand = Plus / Minus

                                                                        
Query: 153  agattggtgaagttagagctgctctaggacaactatctggaaaatctgcactgtattgct 212
            |||||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||
Sbjct: 5023 agattggtgaagttagagctgccctaggacaactatcaggaaaagctgcgctatattgct 4964

                                                                        
Query: 213  cagatggttcaattgcgaggtacctgatagcaaggaactgggatgtgaggaaggctacca 272
            |||||| ||| ||||||||||||||| |||| ||||||||||| |||| |||||| || |
Sbjct: 4963 cagatgcttcgattgcgaggtacctggtagcgaggaactgggaagtgaagaaggccacga 4904

                                                                        
Query: 273  aaatgcttacaaaaaccttgaaatggcgttcagagtataagccagatgagatacgttggg 332
            ||||||| |  ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4903 aaatgctgaagaaaaccttgaaatggcgttcagagtataagccagatgagatccgttggg 4844



 Score =  105 bits (53), Expect = 2e-19
 Identities = 65/69 (94%)
 Strand = Plus / Minus

                                                                        
Query: 356  actggaaaaatttaccgaagtgatcattttgacaagagtggacggagtattcttgtcatg 415
            ||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct: 4669 actggaaaaatctaccgaactgattactttgacaagagtggacggagtattcttgtcatg 4610

                     
Query: 416  agacctgga 424
            |||||||||
Sbjct: 4609 agacctgga 4601

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>gb|AC104126.2| Homo sapiens chromosome 5 clone RP11-526F3, complete sequence
          Length = 187914

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   aatgcttacaaaaaccttgaaa 295
             ||||||||||||||||||||||
Sbjct: 99344 aatgcttacaaaaaccttgaaa 99365

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>gb|AC117748.13| Mus musculus chromosome 5, clone RP24-317A24, complete sequence
          Length = 180438

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 426    gccagaataccaagaagtcca 446
              |||||||||||||||||||||
Sbjct: 112237 gccagaataccaagaagtcca 112217

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 529     cattgattttgctggcttcag 549
               |||||||||||||||||||||
Sbjct: 5776724 cattgattttgctggcttcag 5776744

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 529    cattgattttgctggcttcag 549
              |||||||||||||||||||||
Sbjct: 509964 cattgattttgctggcttcag 509944

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 38      ccttccccgcctcgccgtcga 58
               |||||||||||||||||||||
Sbjct: 9424538 ccttccccgcctcgccgtcga 9424558

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>gb|AC010857.8| Homo sapiens chromosome 8, clone RP11-301G7, complete sequence
          Length = 155064

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 422   ggatgccagaataccaagaag 442
             |||||||||||||||||||||
Sbjct: 86603 ggatgccagaataccaagaag 86583

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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     ccttccccgcctcgccgtcga 58
              |||||||||||||||||||||
Sbjct: 121938 ccttccccgcctcgccgtcga 121958

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 38      ccttccccgcctcgccgtcga 58
               |||||||||||||||||||||
Sbjct: 9422659 ccttccccgcctcgccgtcga 9422679

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>gb|AY261362.1| African swine fever virus isolate Mkuzi 1979, complete genome
          Length = 192714

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 34     tccgccttccccgcctcgccg 54
              |||||||||||||||||||||
Sbjct: 123790 tccgccttccccgcctcgccg 123770

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>emb|AL807744.7| Mouse DNA sequence from clone RP23-174C4 on chromosome X, complete
             sequence
          Length = 163576

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   gctaccaaaatgcttacaaaa 286
             |||||||||||||||||||||
Sbjct: 72644 gctaccaaaatgcttacaaaa 72664

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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 177     taggacaactatctggaaaat 197
               |||||||||||||||||||||
Sbjct: 1752694 taggacaactatctggaaaat 1752674

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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 426     gccagaataccaagaagtcc 445
               ||||||||||||||||||||
Sbjct: 3249954 gccagaataccaagaagtcc 3249973

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>ref|XM_525524.1| PREDICTED: Pan troglodytes similar to Hypothetical protein FLJ21125
            (LOC470140), mRNA
          Length = 6756

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 245  aggaactgggatgtgaggaaggct 268
            |||| |||||||||||||||||||
Sbjct: 2825 aggagctgggatgtgaggaaggct 2848

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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 640     taacgctcccaagttttttgagtc 663
               ||||||||||||||||||| ||||
Sbjct: 1337955 taacgctcccaagttttttaagtc 1337978

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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 426     gccagaataccaagaagtcc 445
               ||||||||||||||||||||
Sbjct: 3250124 gccagaataccaagaagtcc 3250143

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>gb|AC128597.3| Rattus norvegicus  BAC CH230-62C6 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 198520

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    gctggacaggatcagatggt 522
              ||||||||||||||||||||
Sbjct: 144631 gctggacaggatcagatggt 144650

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>gb|AC112406.5| Rattus norvegicus 11 BAC CH230-329D3 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 182245

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  gctggacaggatcagatggt 522
            ||||||||||||||||||||
Sbjct: 4983 gctggacaggatcagatggt 5002

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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 51     gccgtcgacaagggaatagcaaaacaga 78
              |||| ||||||||||| |||||||||||
Sbjct: 186374 gccggcgacaagggaacagcaaaacaga 186401

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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 51    gccgtcgacaagggaatagcaaaacaga 78
             |||| ||||||||||| |||||||||||
Sbjct: 98452 gccggcgacaagggaacagcaaaacaga 98479

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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 51    gccgtcgacaagggaatagcaaaacaga 78
             |||| ||||||||||| |||||||||||
Sbjct: 19830 gccggcgacaagggaacagcaaaacaga 19857

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>emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in linkage group 20
             Contains the gene for a novel protein similar to
             vertebrate dermatopontin (DPT), the atp1b1a gene for
             ATPase, Na+/K+ transporting, beta 1a polypeptide, the gene
             for a novel protein containing a homocysteine
             S-methyltransferase domain, the bivm gene for basic,
             immunoglobulin-like variable motif containing, the 5' end
             of the gene for a novel zinc finger protein (wu:fc06h02),
             the ndpkz4 gene for nucleoside diphosphate kinase-Z4 and
             the gene for a novel protein containing an inosine-uridine
             preferring nucleoside hydrolase doamin, complete sequence
          Length = 162005

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   gtcatgagacctggatgcca 429
             ||||||||||||||||||||
Sbjct: 74300 gtcatgagacctggatgcca 74319

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>emb|AL691490.1|SPBPB8B6 S.pombe chromosome II BAC pB8B6
          Length = 20000

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  ggagaatgcaattctaaatc 497
            ||||||||||||||||||||
Sbjct: 5622 ggagaatgcaattctaaatc 5641

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>gb|AC093550.3| Drosophila melanogaster 3L BAC RP98-24K7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 184523

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aaacagaattatgagctcag 91
             ||||||||||||||||||||
Sbjct: 57245 aaacagaattatgagctcag 57264

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>emb|BX321902.9| Zebrafish DNA sequence from clone DKEYP-6E8 in linkage group 6,
             complete sequence
          Length = 73408

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   gtcatgagacctggatgcca 429
             ||||||||||||||||||||
Sbjct: 16995 gtcatgagacctggatgcca 16976

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>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20,
             complete sequence
          Length = 139421

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   caagaagtccaaaggacaga 455
             ||||||||||||||||||||
Sbjct: 94818 caagaagtccaaaggacaga 94799

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>emb|CR386056.1| Gallus gallus finished cDNA, clone ChEST216a13
          Length = 943

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 475 tatggagaatgcaattctaa 494
           ||||||||||||||||||||
Sbjct: 457 tatggagaatgcaattctaa 476

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 436      caagaagtccaaaggacaga 455
                ||||||||||||||||||||
Sbjct: 14915040 caagaagtccaaaggacaga 14915021

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>gb|AC098617.5| Homo sapiens BAC clone RP11-56I1 from 2, complete sequence
          Length = 142812

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    atgcaattctaaatcttcca 502
              ||||||||||||||||||||
Sbjct: 120504 atgcaattctaaatcttcca 120485

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>gb|AC113346.2| Homo sapiens chromosome 5 clone CTD-2532K18, complete sequence
          Length = 175075

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 612   ctgaaagattgggtgtggca 631
             ||||||||||||||||||||
Sbjct: 53597 ctgaaagattgggtgtggca 53578

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>emb|BX005104.7| Zebrafish DNA sequence from clone DKEY-191D13 in linkage group 6,
              complete sequence
          Length = 152217

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 410    gtcatgagacctggatgcca 429
              ||||||||||||||||||||
Sbjct: 103370 gtcatgagacctggatgcca 103389

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>dbj|AP004132.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1089_A02
          Length = 117908

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   caagaagtccaaaggacaga 455
             ||||||||||||||||||||
Sbjct: 68536 caagaagtccaaaggacaga 68517

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>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0036H07
          Length = 149797

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    caagaagtccaaaggacaga 455
              ||||||||||||||||||||
Sbjct: 127488 caagaagtccaaaggacaga 127469

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>gb|AE003549.4| Drosophila melanogaster chromosome 3L, section 36 of 83 of the complete
             sequence
          Length = 295143

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aaacagaattatgagctcag 91
             ||||||||||||||||||||
Sbjct: 45403 aaacagaattatgagctcag 45422

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 436      caagaagtccaaaggacaga 455
                ||||||||||||||||||||
Sbjct: 14923281 caagaagtccaaaggacaga 14923262

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>emb|AL671963.9| Mouse DNA sequence from clone RP23-35L3 on chromosome X, complete
              sequence
          Length = 200688

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 113    catgcgaaagaagcagcattatat 136
              |||||||||||||||||| |||||
Sbjct: 119191 catgcgaaagaagcagcagtatat 119214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,653,251
Number of Sequences: 3902068
Number of extensions: 5653251
Number of successful extensions: 108957
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108534
Number of HSP's gapped (non-prelim): 417
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result