ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6m03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G09, full insert sequence Length = 995 Score = 147 bits (74), Expect = 2e-32 Identities = 167/198 (84%) Strand = Plus / Plus Query: 1 gacaagttgttggatgacaccagcatcacgcacctcttctccattaccaagtacaccggc 60 ||||||||| |||| | || ||| |||||||| | ||| | || |||||||||| ||| Sbjct: 273 gacaagttgctggaccatacgagcgtcacgcacttgttcccgatcaccaagtacatcggt 332 Query: 61 ttgcttgccaccggcctcacagctgatgcgaggtccttggtctcccaagcaagaaatgaa 120 |||| ||||| ||||||||||||||||| |||||||| |||| ||||||||| ||||| Sbjct: 333 ctgctcgccactggcctcacagctgatgcaaggtccttagtctaccaagcaaggaatgag 392 Query: 121 gcagccgagttccgtaaaaaatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||| || |||||| |||||||| ||||||||||| || || ||||||||||||||| Sbjct: 393 gcagctgaattccgtttcaaatggggctatgagatgcccgtagacgtattagcaaaatgg 452 Query: 181 attgcagacaaagcacaa 198 || ||||||||||||||| Sbjct: 453 atagcagacaaagcacaa 470
>gb|AY104377.1| Zea mays PCO108605 mRNA sequence Length = 1142 Score = 145 bits (73), Expect = 6e-32 Identities = 130/149 (87%) Strand = Plus / Plus Query: 46 accaagtacaccggcttgcttgccaccggcctcacagctgatgcgaggtccttggtctcc 105 ||||||||| ||| ||||||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 307 accaagtacgtcggattgcttgccactggcctcacagctgatgcaaggtcattggtttcc 366 Query: 106 caagcaagaaatgaagcagccgagttccgtaaaaaatggggatatgagatgcctgtggat 165 |||||||| || |||||||| ||||| ||| |||||||| ||||||||||| || ||| Sbjct: 367 caagcaaggaacgaagcagctgagtttcgtttcaaatggggctatgagatgccagttgat 426 Query: 166 gtattagcaaaatggattgcagacaaagc 194 || ||||||||||||||||| |||||||| Sbjct: 427 gtgttagcaaaatggattgctgacaaagc 455
>ref|XM_470540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 741 Score = 139 bits (70), Expect = 4e-30 Identities = 166/198 (83%) Strand = Plus / Plus Query: 1 gacaagttgttggatgacaccagcatcacgcacctcttctccattaccaagtacaccggc 60 ||||||||| |||| | || ||| |||||||| | ||| | || |||||||||| ||| Sbjct: 172 gacaagttgctggaccatacgagcgtcacgcacttgttcccgatcaccaagtacatcggt 231 Query: 61 ttgcttgccaccggcctcacagctgatgcgaggtccttggtctcccaagcaagaaatgaa 120 |||| ||||| ||||||||||||||||| |||||||| |||| ||||||||| ||||| Sbjct: 232 ctgctcgccactggcctcacagctgatgcaaggtccttagtctaccaagcaaggaatgag 291 Query: 121 gcagccgagttccgtaaaaaatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||| || |||||| |||||||| || |||||||| || || ||||||||||||||| Sbjct: 292 gcagctgaattccgtttcaaatggggctacgagatgcccgtagacgtattagcaaaatgg 351 Query: 181 attgcagacaaagcacaa 198 || ||||||||||||||| Sbjct: 352 atagcagacaaagcacaa 369
>dbj|AK101031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150K05, full insert sequence Length = 1048 Score = 139 bits (70), Expect = 4e-30 Identities = 166/198 (83%) Strand = Plus / Plus Query: 1 gacaagttgttggatgacaccagcatcacgcacctcttctccattaccaagtacaccggc 60 ||||||||| |||| | || ||| |||||||| | ||| | || |||||||||| ||| Sbjct: 285 gacaagttgctggaccatacgagcgtcacgcacttgttcccgatcaccaagtacatcggt 344 Query: 61 ttgcttgccaccggcctcacagctgatgcgaggtccttggtctcccaagcaagaaatgaa 120 |||| ||||| ||||||||||||||||| |||||||| |||| ||||||||| ||||| Sbjct: 345 ctgctcgccactggcctcacagctgatgcaaggtccttagtctaccaagcaaggaatgag 404 Query: 121 gcagccgagttccgtaaaaaatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||| || |||||| |||||||| || |||||||| || || ||||||||||||||| Sbjct: 405 gcagctgaattccgtttcaaatggggctacgagatgcccgtagacgtattagcaaaatgg 464 Query: 181 attgcagacaaagcacaa 198 || ||||||||||||||| Sbjct: 465 atagcagacaaagcacaa 482
>dbj|AK060026.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C02, full insert sequence Length = 1043 Score = 139 bits (70), Expect = 4e-30 Identities = 166/198 (83%) Strand = Plus / Plus Query: 1 gacaagttgttggatgacaccagcatcacgcacctcttctccattaccaagtacaccggc 60 ||||||||| |||| | || ||| |||||||| | ||| | || |||||||||| ||| Sbjct: 273 gacaagttgctggaccatacgagcgtcacgcacttgttcccgatcaccaagtacatcggt 332 Query: 61 ttgcttgccaccggcctcacagctgatgcgaggtccttggtctcccaagcaagaaatgaa 120 |||| ||||| ||||||||||||||||| |||||||| |||| ||||||||| ||||| Sbjct: 333 ctgctcgccactggcctcacagctgatgcaaggtccttagtctaccaagcaaggaatgag 392 Query: 121 gcagccgagttccgtaaaaaatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||| || |||||| |||||||| || |||||||| || || ||||||||||||||| Sbjct: 393 gcagctgaattccgtttcaaatggggctacgagatgcccgtagacgtattagcaaaatgg 452 Query: 181 attgcagacaaagcacaa 198 || ||||||||||||||| Sbjct: 453 atagcagacaaagcacaa 470
>dbj|AK059929.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A07, full insert sequence Length = 1042 Score = 139 bits (70), Expect = 4e-30 Identities = 166/198 (83%) Strand = Plus / Plus Query: 1 gacaagttgttggatgacaccagcatcacgcacctcttctccattaccaagtacaccggc 60 ||||||||| |||| | || ||| |||||||| | ||| | || |||||||||| ||| Sbjct: 286 gacaagttgctggaccatacgagcgtcacgcacttgttcccgatcaccaagtacatcggt 345 Query: 61 ttgcttgccaccggcctcacagctgatgcgaggtccttggtctcccaagcaagaaatgaa 120 |||| ||||| ||||||||||||||||| |||||||| |||| ||||||||| ||||| Sbjct: 346 ctgctcgccactggcctcacagctgatgcaaggtccttagtctaccaagcaaggaatgag 405 Query: 121 gcagccgagttccgtaaaaaatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||| || |||||| |||||||| || |||||||| || || ||||||||||||||| Sbjct: 406 gcagctgaattccgtttcaaatggggctacgagatgcccgtagacgtattagcaaaatgg 465 Query: 181 attgcagacaaagcacaa 198 || ||||||||||||||| Sbjct: 466 atagcagacaaagcacaa 483
>dbj|AB026558.1| Oryza sativa (japonica cultivar-group) OsPAA1 mRNA for alpha 1 subunit of 20S proteasome, complete cds Length = 1010 Score = 139 bits (70), Expect = 4e-30 Identities = 166/198 (83%) Strand = Plus / Plus Query: 1 gacaagttgttggatgacaccagcatcacgcacctcttctccattaccaagtacaccggc 60 ||||||||| |||| | || ||| |||||||| | ||| | || |||||||||| ||| Sbjct: 251 gacaagttgctggaccatacgagcgtcacgcacttgttcccgatcaccaagtacatcggt 310 Query: 61 ttgcttgccaccggcctcacagctgatgcgaggtccttggtctcccaagcaagaaatgaa 120 |||| ||||| ||||||||||||||||| |||||||| |||| ||||||||| ||||| Sbjct: 311 ctgctcgccactggcctcacagctgatgcaaggtccttagtctaccaagcaaggaatgag 370 Query: 121 gcagccgagttccgtaaaaaatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||| || |||||| |||||||| || |||||||| || || ||||||||||||||| Sbjct: 371 gcagctgaattccgtttcaaatggggctacgagatgcccgtagacgtattagcaaaatgg 430 Query: 181 attgcagacaaagcacaa 198 || ||||||||||||||| Sbjct: 431 atagcagacaaagcacaa 448
>emb|AJ293343.1|ZMA293343 Zea mays mRNA for maize 20S proteasome alpha subunit (paa gene) Length = 1040 Score = 121 bits (61), Expect = 9e-25 Identities = 127/149 (85%) Strand = Plus / Plus Query: 46 accaagtacaccggcttgcttgccaccggcctcacagctgatgcgaggtccttggtctcc 105 ||||||||| ||| ||||||||||| ||||| |||||||||| ||||| ||||| ||| Sbjct: 298 accaagtacgtcggattgcttgccactggccttacagctgatggtaggtcattggtttcc 357 Query: 106 caagcaagaaatgaagcagccgagttccgtaaaaaatggggatatgagatgcctgtggat 165 |||||||| || |||||||| ||||| ||| |||||||| || |||||||| || ||| Sbjct: 358 caagcaaggaacgaagcagctgagtttcgtttcaaatggggctacgagatgccagttgat 417 Query: 166 gtattagcaaaatggattgcagacaaagc 194 || ||||||||||||||||| |||||||| Sbjct: 418 gtgttagcaaaatggattgctgacaaagc 446
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 7e-13 Identities = 86/101 (85%) Strand = Plus / Minus Query: 80 cagctgatgcgaggtccttggtctcccaagcaagaaatgaagcagccgagttccgtaaaa 139 |||||||||| |||||||| |||| ||||||||| ||||| ||||| || |||||| | Sbjct: 4193453 cagctgatgcaaggtccttagtctaccaagcaaggaatgaggcagctgaattccgtttca 4193394 Query: 140 aatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||||| || |||||||| || || ||||||||||||||| Sbjct: 4193393 aatggggctacgagatgcccgtagacgtattagcaaaatgg 4193353
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 7e-13 Identities = 86/101 (85%) Strand = Plus / Minus Query: 80 cagctgatgcgaggtccttggtctcccaagcaagaaatgaagcagccgagttccgtaaaa 139 |||||||||| |||||||| |||| ||||||||| ||||| ||||| || |||||| | Sbjct: 4193562 cagctgatgcaaggtccttagtctaccaagcaaggaatgaggcagctgaattccgtttca 4193503 Query: 140 aatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||||| || |||||||| || || ||||||||||||||| Sbjct: 4193502 aatggggctacgagatgcccgtagacgtattagcaaaatgg 4193462
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 81.8 bits (41), Expect = 7e-13 Identities = 86/101 (85%) Strand = Plus / Minus Query: 80 cagctgatgcgaggtccttggtctcccaagcaagaaatgaagcagccgagttccgtaaaa 139 |||||||||| |||||||| |||| ||||||||| ||||| ||||| || |||||| | Sbjct: 94090 cagctgatgcaaggtccttagtctaccaagcaaggaatgaggcagctgaattccgtttca 94031 Query: 140 aatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||||| || |||||||| || || ||||||||||||||| Sbjct: 94030 aatggggctacgagatgcccgtagacgtattagcaaaatgg 93990
>gb|AF034572.1|AF034572 Glycine max proteasome IOTA subunit mRNA, complete cds Length = 994 Score = 81.8 bits (41), Expect = 7e-13 Identities = 80/93 (86%) Strand = Plus / Plus Query: 106 caagcaagaaatgaagcagccgagttccgtaaaaaatggggatatgagatgcctgtggat 165 |||||||||||||||||||| ||||| || | || ||||||||||||||||| ||| Sbjct: 391 caagcaagaaatgaagcagctgagtttcgctttacatatggatatgagatgcctgtagat 450 Query: 166 gtattagcaaaatggattgcagacaaagcacaa 198 |||||||| |||||||||||||| ||| ||||| Sbjct: 451 gtattagctaaatggattgcagataaatcacaa 483
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 81.8 bits (41), Expect = 7e-13 Identities = 86/101 (85%) Strand = Plus / Minus Query: 80 cagctgatgcgaggtccttggtctcccaagcaagaaatgaagcagccgagttccgtaaaa 139 |||||||||| |||||||| |||| ||||||||| ||||| ||||| || |||||| | Sbjct: 22068 cagctgatgcaaggtccttagtctaccaagcaaggaatgaggcagctgaattccgtttca 22009 Query: 140 aatggggatatgagatgcctgtggatgtattagcaaaatgg 180 ||||||| || |||||||| || || ||||||||||||||| Sbjct: 22008 aatggggctacgagatgcccgtagacgtattagcaaaatgg 21968
>gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete sequence Length = 120437 Score = 61.9 bits (31), Expect = 7e-07 Identities = 64/75 (85%) Strand = Plus / Minus Query: 106 caagcaagaaatgaagcagccgagttccgtaaaaaatggggatatgagatgcctgtggat 165 |||||||||||||||||||| ||||| || | |||| |||||||||||||| |||||| Sbjct: 46358 caagcaagaaatgaagcagctgagtttcgccataaatttggatatgagatgccggtggat 46299 Query: 166 gtattagcaaaatgg 180 || || || |||||| Sbjct: 46298 gtgttggctaaatgg 46284
>emb|Y16644.1|NTY16644 Nicotiana tabacum mRNA for proteasome A-type subunit Length = 1035 Score = 46.1 bits (23), Expect = 0.041 Identities = 41/47 (87%) Strand = Plus / Plus Query: 145 ggatatgagatgcctgtggatgtattagcaaaatggattgcagacaa 191 |||||||| ||||| ||||||||| | | ||||||||||||||||| Sbjct: 384 ggatatgaaatgccagtggatgtactgtctaaatggattgcagacaa 430
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 44.1 bits (22), Expect = 0.16 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 cttgcttgccaccggcctcaca 81 |||||||||||||||||||||| Sbjct: 223306 cttgcttgccaccggcctcaca 223327
>emb|X89429.1|PADNAGRIS Podospora anserina grisea gene, wild-type and copy of a long-lived mutant Length = 3417 Score = 44.1 bits (22), Expect = 0.16 Identities = 22/22 (100%) Strand = Plus / Plus Query: 18 caccagcatcacgcacctcttc 39 |||||||||||||||||||||| Sbjct: 1706 caccagcatcacgcacctcttc 1727
>emb|Z73908.1|CEF53B2 Caenorhabditis elegans Cosmid F53B2, complete sequence Length = 33478 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 attgcagacaaagcacaaata 201 ||||||||||||||||||||| Sbjct: 18174 attgcagacaaagcacaaata 18194
>ref|NM_069999.2| Caenorhabditis elegans F53B2.5 (F53B2.5) mRNA, complete cds Length = 1347 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 attgcagacaaagcacaaata 201 ||||||||||||||||||||| Sbjct: 536 attgcagacaaagcacaaata 516
>emb|Z72548.1|SCYGL026C S.cerevisiae chromosome VII reading frame ORF YGL026c Length = 2620 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 tggtctcccaagcaagaaatgaag 121 ||||||||||||| |||||||||| Sbjct: 2139 tggtctcccaagctagaaatgaag 2116
>emb|V01343.1|SCTRP5B Part of the yeast gene for tryptophan synthetase. A copy of the insertion element IS2 is inserted after cloning in E.coli by duplicating a 5 base pair sequence. This is the wildtype TRP5 gene before insertion of IS2 Length = 798 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 tggtctcccaagcaagaaatgaag 121 ||||||||||||| |||||||||| Sbjct: 534 tggtctcccaagctagaaatgaag 557
>emb|V01342.1|SCTRP5A Yeast gene (trp5) for tryptophan synthetase Length = 2992 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 tggtctcccaagcaagaaatgaag 121 ||||||||||||| |||||||||| Sbjct: 752 tggtctcccaagctagaaatgaag 775
>gb|DQ331977.1| Synthetic construct Saccharomyces cerevisiae clone FLH202464.01X TRP5 gene, complete sequence Length = 2124 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 tggtctcccaagcaagaaatgaag 121 ||||||||||||| |||||||||| Sbjct: 254 tggtctcccaagctagaaatgaag 277
>gb|J02562.1|SYNTRIS22 yeast (s.cerevisiae) trp5 gene and chimeric is2 element: 3'end Length = 709 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 tggtctcccaagcaagaaatgaag 121 ||||||||||||| |||||||||| Sbjct: 445 tggtctcccaagctagaaatgaag 468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,770,596 Number of Sequences: 3902068 Number of extensions: 1770596 Number of successful extensions: 129721 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129611 Number of HSP's gapped (non-prelim): 110 length of query: 201 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 179 effective length of database: 17,147,199,772 effective search space: 3069348759188 effective search space used: 3069348759188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
