ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags6m01 |
|---|---|
| Clone Library Name | barley_pub |
>RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 317 Score = 107 bits (267), Expect(2) = 3e-28 Identities = 72/192 (37%), Positives = 98/192 (51%), Gaps = 1/192 (0%) Frame = +1 Query: 82 GNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVRE 261 GN + TLVNA+L+HC G++S Sbjct: 107 GNYDNTLVNALLYHCA-----------------------------------GKLSGI--G 129 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 + RPGIVHR+DK TSGLLVVAK + +HA LA QF H+INR Y ++ G PS ++ Sbjct: 130 GVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPS-LQGHVD 188 Query: 442 VPISRDPNNRIRM-VAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRA 618 P++R NR +M + + G G R H R + ++L+E RLETGRTHQ+R Sbjct: 189 APLARSSVNRQKMAIVSDGRGKRAVTH------YRMITPLKNASLIECRLETGRTHQVRV 242 Query: 619 HAKYLGNPLLGD 654 H +G+ LLGD Sbjct: 243 HMSSIGHSLLGD 254 Score = 37.7 bits (86), Expect(2) = 3e-28 Identities = 17/19 (89%), Positives = 17/19 (89%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 EHLLVVNKPA MVVHPA G Sbjct: 89 EHLLVVNKPAGMVVHPAAG 107
>YBC5_CHLVI (O50310) Hypothetical RNA pseudouridine synthase in bchI 5'region| (EC 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 111 bits (277), Expect(2) = 7e-26 Identities = 72/193 (37%), Positives = 98/193 (50%) Frame = +1 Query: 82 GNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVRE 261 GN GTL NAILHH +G+ + E+ + Sbjct: 102 GNWTGTLANAILHH------------------------------------LGKDADELDK 125 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 +RPGIVHRLDK TSGL+++AK+ + +LA QF + +VY ++ GVP S I+ Sbjct: 126 TEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIK 185 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 I R NR M P G KHA + Y+V E G +L++ L TGRTHQIR H Sbjct: 186 TNIGRSHKNRKVMANFPYEGAE-GKHAITDYQVVEDL--GYFSLMDVTLHTGRTHQIRVH 242 Query: 622 AKYLGNPLLGDET 660 ++LG+ +LGDET Sbjct: 243 LQHLGHSILGDET 255 Score = 25.8 bits (55), Expect(2) = 7e-26 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 + L+V++K A MVVHPA G Sbjct: 84 DDLMVIDKEAGMVVHPAFG 102
>YMDA_CHLAU (Q45826) Hypothetical RNA pseudouridine synthase in mdh 5'region| (EC 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (ORFA) (Fragment) Length = 253 Score = 107 bits (267), Expect = 3e-23 Identities = 55/129 (42%), Positives = 83/129 (64%) Frame = +1 Query: 268 VRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVP 447 +RPGIVHRLD+ TSGLLV+A+ + + L +Q + + ++Y +L G P P + I+ P Sbjct: 76 LRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRP-PETGTIDAP 134 Query: 448 ISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAK 627 I RDP +R+RM P + A + Y++ + F G +L+E +LETGRTHQIR H + Sbjct: 135 IGRDPRDRLRMAVVPD-----GRPARTHYRLLDTF--GDYSLLEVQLETGRTHQIRVHLR 187 Query: 628 YLGNPLLGD 654 +LG P++GD Sbjct: 188 HLGYPIVGD 196 Score = 32.7 bits (73), Expect = 1.00 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = +3 Query: 33 LLVVNKPAHMVVHPAPG 83 + V+NKPA MVVHPAPG Sbjct: 37 IAVINKPAGMVVHPAPG 53
>YLYB_BACSU (Q45480) Hypothetical RNA pseudouridine synthase ylyB (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 303 Score = 105 bits (261), Expect = 2e-22 Identities = 59/130 (45%), Positives = 78/130 (60%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 ++RPGIVHR+DK TSGLL+VAK++ +H L Q T+ R Y ++ G+ S + I+ Sbjct: 128 VMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDA 187 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PI RD +R M R K+A + + V E F LVE +LETGRTHQIR H Sbjct: 188 PIGRDKKDRQSMTVT-----RDGKNAVTHFHVLEGF--QDFTLVECQLETGRTHQIRVHM 240 Query: 625 KYLGNPLLGD 654 KY+G PL GD Sbjct: 241 KYIGFPLAGD 250 Score = 33.9 bits (76), Expect = 0.45 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +3 Query: 12 LFTRXEHLLVVNKPAHMVVHPAPG 83 ++ + +LVVNKP MVVHPAPG Sbjct: 82 IYYEDQDVLVVNKPRGMVVHPAPG 105
>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 92.0 bits (227), Expect(2) = 2e-20 Identities = 62/193 (32%), Positives = 89/193 (46%) Frame = +1 Query: 82 GNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVRE 261 GNA+GT++NA+L+H I EV Sbjct: 108 GNASGTVLNALLYHYP---------------------------------AIAEVP----- 129 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 R GIVHRLDK T+GL+V+AK + +L + I R Y ++ CG+ + ++ Sbjct: 130 ---RAGIVHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIACGIMT-KGGMVD 185 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 P++R P R M H K A + Y++ E F + RLETGRTHQIR H Sbjct: 186 QPMARHPTKRTHMAV-----HPMGKPAVTHYRIMERF--RNYTRLRLRLETGRTHQIRVH 238 Query: 622 AKYLGNPLLGDET 660 ++ +PLLGD+T Sbjct: 239 MAHIAHPLLGDQT 251 Score = 26.9 bits (58), Expect(2) = 2e-20 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 + +LV+NKP VVHP G Sbjct: 90 DDILVINKPKDFVVHPGAG 108
>RLUD_RALSO (Q8XYX8) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 358 Score = 98.2 bits (243), Expect = 2e-20 Identities = 59/131 (45%), Positives = 80/131 (61%), Gaps = 3/131 (2%) Frame = +1 Query: 271 RPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPI 450 R GIVHRLDK TSGL+VVA+ + L Q + T+ R Y++L G +P + I+ PI Sbjct: 163 RAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG-ETPEAGTIDAPI 221 Query: 451 SRDPNNRIRM-VAAPGSGHRYAKHAASRYKVREVFCGGGS--ALVEWRLETGRTHQIRAH 621 RDP +R RM + SG K A + +K +V G + +LV+ +LETGRTHQIR H Sbjct: 222 GRDPRDRTRMAIIETASG----KPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVH 277 Query: 622 AKYLGNPLLGD 654 + G+PLLGD Sbjct: 278 FESEGHPLLGD 288 Score = 31.2 bits (69), Expect = 2.9 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = +3 Query: 33 LLVVNKPAHMVVHPAPG 83 LLV+NKPA +VVHPA G Sbjct: 125 LLVINKPAGLVVHPAAG 141
>Y1758_AQUAE (O67638) Hypothetical RNA pseudouridine synthase aq_1758 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 316 Score = 89.0 bits (219), Expect(2) = 5e-20 Identities = 62/193 (32%), Positives = 91/193 (47%) Frame = +1 Query: 82 GNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVRE 261 G +GTLVNA+L+H K + +IG V Sbjct: 107 GYTSGTLVNALLYHIKDLS------------------------------SIGGVE----- 131 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 RPGIVHRLDK T+G++V+AK+ +H L QF+ + Y L G+ + I+ Sbjct: 132 ---RPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYGAID 188 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 PI+R P +R R + K A + Y V + + L++ ++ TGRTHQIR H Sbjct: 189 TPIARHPVDRKRFWV-----RKEGKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVH 243 Query: 622 AKYLGNPLLGDET 660 +G+P+LGD T Sbjct: 244 FASIGHPVLGDRT 256 Score = 28.5 bits (62), Expect(2) = 5e-20 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 E + VV KP +VVHP+PG Sbjct: 89 EDIAVVEKPCGLVVHPSPG 107
>Y1629_SYNY3 (P74346) Hypothetical RNA pseudouridine synthase slr1629 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 96.3 bits (238), Expect = 7e-20 Identities = 52/130 (40%), Positives = 77/130 (59%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + RPGIVHRLDK T+G +VVAK E + L Q K T R+Y + G P + + Sbjct: 146 VQRPGIVHRLDKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNL 205 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 P+ R P +R +M P + + A + +++ E G + +E++LETGRTHQIR H+ Sbjct: 206 PVGRHPGDRQKMGIVP--VEKGGREAVTHWRLLERI--GNHSWLEFQLETGRTHQIRVHS 261 Query: 625 KYLGNPLLGD 654 K +G+PL+GD Sbjct: 262 KQMGHPLVGD 271 Score = 33.5 bits (75), Expect = 0.58 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 E L+++NKPA +VVHP PG Sbjct: 105 EQLIIINKPAGLVVHPGPG 123
>Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_0682 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 94.4 bits (233), Expect = 3e-19 Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 4/132 (3%) Frame = +1 Query: 271 RPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPI 450 R GIVHRLDK TSG +V+AK+ +H L+EQ K + R YI+L +E + Sbjct: 128 RYGIVHRLDKDTSGGIVIAKNNFTHVCLSEQLKTKMMGRYYIALLSTPLKEEKMSVECYL 187 Query: 451 SRDPNNRIRMVAAPGSGHRYAKHAASRYKVRE----VFCGGGSALVEWRLETGRTHQIRA 618 +R+PNNR++M+A + AK SRY E + G L+ +L TGRTHQIRA Sbjct: 188 TRNPNNRLKMIAL-----KAAKKEKSRYSKSEFTSLLTSQNGMDLIGAKLFTGRTHQIRA 242 Query: 619 HAKYLGNPLLGD 654 H +YL ++GD Sbjct: 243 HLEYLNRHIIGD 254
>RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 344 Score = 92.8 bits (229), Expect = 8e-19 Identities = 56/130 (43%), Positives = 73/130 (56%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GLLVVAK + LA Q + T+ R Y++L G + ++ Sbjct: 154 VPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGV-VDA 212 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PI R P +R RM + K A + Y+V E F S L+ LETGRTHQIR H Sbjct: 213 PIGRHPIHRTRMAVV-----QNGKPARTHYRVLEKFT--ASTLLHCSLETGRTHQIRVHL 265 Query: 625 KYLGNPLLGD 654 +G+PL GD Sbjct: 266 LSIGHPLAGD 275 Score = 32.3 bits (72), Expect = 1.3 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPGXCKWH 98 +HL++++KPA +VVHP G WH Sbjct: 116 DHLIIIDKPAGLVVHPGNG--NWH 137
>RLUD_BORBU (P70870) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 326 Score = 92.8 bits (229), Expect = 8e-19 Identities = 58/144 (40%), Positives = 82/144 (56%) Frame = +1 Query: 226 FTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLT 405 + I + E +RPGIVHRLDK TSG+L+ AK+ + LA+QFK N+VYI++ Sbjct: 121 YHIKSLKINFNEEKIRPGIVHRLDKDTSGVLICAKNISTLRFLAQQFKDKRTNKVYIAIV 180 Query: 406 CGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWR 585 G + IE I RD +NR + + G K A + Y++ F G +L+ + Sbjct: 181 KGNFNSFFGSIESFIDRDKHNRKKFSVSKDRG----KKALTEYRLLLNF--GEYSLLALK 234 Query: 586 LETGRTHQIRAHAKYLGNPLLGDE 657 +TGRTHQ+R H KYL P+LGDE Sbjct: 235 PKTGRTHQLRVHMKYLNFPILGDE 258
>RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 374 Score = 92.8 bits (229), Expect = 8e-19 Identities = 56/130 (43%), Positives = 74/130 (56%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 I R GIVHRLDK TSGL+VVAK + L Q + T+ R+Y ++ G+ P +IE Sbjct: 150 IPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGI-VPFDGKIET 208 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 I RDP+NR++M G K A + KV E + + +E LETGRTHQIR H Sbjct: 209 QIGRDPHNRLKMAVVKFGG----KPAVTHVKVLERYL--AHSYIECSLETGRTHQIRVHM 262 Query: 625 KYLGNPLLGD 654 + +PL GD Sbjct: 263 REANHPLAGD 272 Score = 29.6 bits (65), Expect = 8.4 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = +3 Query: 33 LLVVNKPAHMVVHPAPG 83 ++VVNKPA +VVHPA G Sbjct: 114 VIVVNKPAGLVVHPAAG 130
>Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP0745 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 92.0 bits (227), Expect = 1e-18 Identities = 49/128 (38%), Positives = 75/128 (58%) Frame = +1 Query: 271 RPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPI 450 R GIVHRLDK TSG +V+AK+ +H L+EQ K + R YI+L +E + Sbjct: 128 RYGIVHRLDKDTSGGIVIAKNNFTHVHLSEQLKTKMMGRYYIALLSTPLKEEKMSVECYL 187 Query: 451 SRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 +R+PNNR++M+A ++++ S + + + L+ +L TGRTHQIRAH +Y Sbjct: 188 TRNPNNRLKMIALKAVKKEKSRYSKSEF-ISLLTSQNNLNLIGAKLFTGRTHQIRAHLEY 246 Query: 631 LGNPLLGD 654 L ++GD Sbjct: 247 LNRHIIGD 254
>RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 374 Score = 90.5 bits (223), Expect = 4e-18 Identities = 54/130 (41%), Positives = 73/130 (56%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK TSGL+VVAK + L Q + T+ R+Y ++ G+ P +IE Sbjct: 150 VPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVANGI-VPFDGKIET 208 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 I RDP+NR++M G K A + KV E + + +E LETGRTHQIR H Sbjct: 209 QIGRDPHNRLKMAVVKFGG----KPAVTHVKVLERYL--THSYIECSLETGRTHQIRVHM 262 Query: 625 KYLGNPLLGD 654 + +PL D Sbjct: 263 REANHPLAAD 272 Score = 29.6 bits (65), Expect = 8.4 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = +3 Query: 33 LLVVNKPAHMVVHPAPG 83 ++VVNKPA +VVHPA G Sbjct: 114 VIVVNKPAGLVVHPAAG 130
>RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 320 Score = 89.7 bits (221), Expect = 7e-18 Identities = 53/130 (40%), Positives = 74/130 (56%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK +H +L Q + +++R+Y ++ GV + + I+ Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVIT-SGGTIDA 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PI R R +M K A S Y+V E F V +LETGRTHQIR H Sbjct: 187 PIGRHGVQRQKMAVVDA-----GKVAVSHYRVLERFRAHTHTRV--KLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGD 654 ++G PL+GD Sbjct: 240 SHIGYPLVGD 249 Score = 33.5 bits (75), Expect = 0.58 Identities = 13/19 (68%), Positives = 17/19 (89%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 EH+LV++KPA +VVHPA G Sbjct: 90 EHILVIDKPAGLVVHPAAG 108
>RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 89.7 bits (221), Expect = 7e-18 Identities = 49/131 (37%), Positives = 74/131 (56%) Frame = +1 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 A+ R G+VHRLDK TSG++VVA+ + L EQ ++R Y+++ G + + Sbjct: 134 AVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGA-LVSGGTAD 192 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 PI R P +R++M + A + Y++RE F +E RLETGRTHQIR H Sbjct: 193 APIDRHPRDRLKMAVRDD-----GRDAVTHYRLRERF--RAHTALECRLETGRTHQIRVH 245 Query: 622 AKYLGNPLLGD 654 +L +P++GD Sbjct: 246 MAHLKSPIVGD 256 Score = 30.4 bits (67), Expect = 4.9 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 +H+LV++KPA +VVHP G Sbjct: 97 DHVLVIDKPAGLVVHPGAG 115
>Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1567 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 89.4 bits (220), Expect = 9e-18 Identities = 50/128 (39%), Positives = 71/128 (55%) Frame = +1 Query: 271 RPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPI 450 R GIVHRLD GTSG++VVA E ++ L FK T+++ Y +L G P P+S I+ PI Sbjct: 131 RQGIVHRLDVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYHALVQGHPDPSSGTIDAPI 190 Query: 451 SRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 R + + + +H+ + Y E F ++L++ LETGRTHQIR H Sbjct: 191 GRHRGHEWKFAIT-----KNGRHSLTHYDTLEAFV--AASLLDVHLETGRTHQIRVHFAA 243 Query: 631 LGNPLLGD 654 L +P GD Sbjct: 244 LHHPCCGD 251
>Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1540/MT1592 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 89.4 bits (220), Expect = 9e-18 Identities = 50/128 (39%), Positives = 71/128 (55%) Frame = +1 Query: 271 RPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPI 450 R GIVHRLD GTSG++VVA E ++ L FK T+++ Y +L G P P+S I+ PI Sbjct: 131 RQGIVHRLDVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYHALVQGHPDPSSGTIDAPI 190 Query: 451 SRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 R + + + +H+ + Y E F ++L++ LETGRTHQIR H Sbjct: 191 GRHRGHEWKFAIT-----KNGRHSLTHYDTLEAFV--AASLLDVHLETGRTHQIRVHFAA 243 Query: 631 LGNPLLGD 654 L +P GD Sbjct: 244 LHHPCCGD 251
>RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 88.2 bits (217), Expect = 2e-17 Identities = 48/131 (36%), Positives = 73/131 (55%) Frame = +1 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 ++ R G+VHRLDK TSG++VVA+ + L EQ ++R Y+++ G + Sbjct: 134 SVPRAGVVHRLDKDTSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGA-LVSGGTAN 192 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 PI R P +R++M + A + Y++RE F +E RLETGRTHQIR H Sbjct: 193 APIDRHPRDRLKMAVRDD-----GRDAVTHYRLRERF--RAHTALECRLETGRTHQIRVH 245 Query: 622 AKYLGNPLLGD 654 +L +P++GD Sbjct: 246 MAHLKSPIVGD 256
>RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 87.4 bits (215), Expect = 3e-17 Identities = 53/131 (40%), Positives = 72/131 (54%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L E +L I R Y ++ G + + Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGT-VNE 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PISR P R M S H K A + Y++ E F + RLETGRTHQIR H Sbjct: 187 PISRHPTKRTHM-----SVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGDE 657 ++ +PL+GD+ Sbjct: 240 AHITHPLVGDQ 250
>RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 87.4 bits (215), Expect = 3e-17 Identities = 53/131 (40%), Positives = 72/131 (54%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L E +L I R Y ++ G + + Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGT-VNE 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PISR P R M S H K A + Y++ E F + RLETGRTHQIR H Sbjct: 187 PISRHPTKRTHM-----SVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGDE 657 ++ +PL+GD+ Sbjct: 240 AHITHPLVGDQ 250
>RLUD_XYLFA (Q9PET9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 86.7 bits (213), Expect = 6e-17 Identities = 48/131 (36%), Positives = 73/131 (55%) Frame = +1 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 A+ R G+VHRLDK TSG++VVA+ + L EQ ++R Y+++ + + Sbjct: 134 AVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSA-LVSGGTVN 192 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 I R P +R+RM + K A + Y++RE F +E RL+TGRTHQIR H Sbjct: 193 AAIERHPRDRLRMAVSD-----TGKEAVTHYRLRERF--RAHTALECRLDTGRTHQIRVH 245 Query: 622 AKYLGNPLLGD 654 +L +P++GD Sbjct: 246 MAHLRHPIVGD 256 Score = 31.2 bits (69), Expect = 2.9 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 EH+ V+NKPA +VVHP G Sbjct: 97 EHVFVLNKPAGLVVHPGAG 115
>RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 86.7 bits (213), Expect = 6e-17 Identities = 51/131 (38%), Positives = 71/131 (54%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L E + I R Y ++ G + R++ Sbjct: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTA-GGRVDE 187 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PISR R M H K A + Y++ E F + RLETGRTHQIR H Sbjct: 188 PISRHSTKRTHMAV-----HPMGKPATTHYRIMEHF--RAHTRLRLRLETGRTHQIRVHM 240 Query: 625 KYLGNPLLGDE 657 ++ +PL+GD+ Sbjct: 241 SHINHPLVGDQ 251
>RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 86.7 bits (213), Expect = 6e-17 Identities = 53/130 (40%), Positives = 69/130 (53%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L + + R Y ++ G + I+ Sbjct: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGM-IDK 187 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PI R R M +P KHA + Y+V E F + RLETGRTHQIR H Sbjct: 188 PIGRHSTKRTLMSVSP-----MGKHAVTHYRVAEHF--REHTRLRLRLETGRTHQIRVHM 240 Query: 625 KYLGNPLLGD 654 YL +PLLGD Sbjct: 241 AYLQHPLLGD 250
>RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 86.3 bits (212), Expect = 8e-17 Identities = 53/130 (40%), Positives = 69/130 (53%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L + I R Y ++ G + +++ Sbjct: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIGRMTAGG-KVDQ 187 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PI R R M AP K A + Y+V E F + RLETGRTHQIR H Sbjct: 188 PIGRHSTKRTLMAVAP-----LGKPAVTHYRVAEHF--REHTRIRLRLETGRTHQIRVHM 240 Query: 625 KYLGNPLLGD 654 YL +PLLGD Sbjct: 241 SYLQHPLLGD 250
>RLUD_XYLFT (Q87AR7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 85.9 bits (211), Expect = 1e-16 Identities = 48/131 (36%), Positives = 73/131 (55%) Frame = +1 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 A+ R G+VHRLDK TSG++VVA+ + L EQ ++R Y+++ + + Sbjct: 134 AVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSA-LVSGGTVN 192 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 I R P +R+RM + K A + Y++RE F +E RL+TGRTHQIR H Sbjct: 193 AAIERHPRDRLRMEVSD-----TGKEAVTHYRLRERF--RAHTALECRLDTGRTHQIRVH 245 Query: 622 AKYLGNPLLGD 654 +L +P++GD Sbjct: 246 MAHLRHPIVGD 256 Score = 32.0 bits (71), Expect = 1.7 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 EH+ V+NKPA +VVHP G Sbjct: 97 EHVFVINKPAGLVVHPGAG 115
>RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 85.9 bits (211), Expect = 1e-16 Identities = 48/131 (36%), Positives = 72/131 (54%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GI+HRLDK T+GL+VVAK+ + L + I R Y ++ G+ + +++ Sbjct: 129 VPRAGIIHRLDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAIASGIMT-QGGKVDE 187 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 P++R P R M H K A + Y++ E F + RLETGRTHQIR H Sbjct: 188 PMARHPTKRTAMAV-----HPMGKPAITHYRIMERF--RNYTRLRLRLETGRTHQIRVHM 240 Query: 625 KYLGNPLLGDE 657 ++ +PLLGD+ Sbjct: 241 AHIAHPLLGDQ 251
>RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 84.7 bits (208), Expect = 2e-16 Identities = 51/130 (39%), Positives = 70/130 (53%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L E + I R Y ++ G + ++ Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDE 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PISR P R M H K A + Y++ E F + RLETGRTHQIR H Sbjct: 187 PISRHPTKRTHMAV-----HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGD 654 ++ +PL+GD Sbjct: 240 AHITHPLVGD 249
>RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 84.7 bits (208), Expect = 2e-16 Identities = 51/130 (39%), Positives = 70/130 (53%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L E + I R Y ++ G + ++ Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDE 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PISR P R M H K A + Y++ E F + RLETGRTHQIR H Sbjct: 187 PISRHPTKRTHMAV-----HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGD 654 ++ +PL+GD Sbjct: 240 AHITHPLVGD 249
>RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 84.7 bits (208), Expect = 2e-16 Identities = 51/130 (39%), Positives = 70/130 (53%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L E + I R Y ++ G + ++ Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDE 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PISR P R M H K A + Y++ E F + RLETGRTHQIR H Sbjct: 187 PISRHPTKRTHMAV-----HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGD 654 ++ +PL+GD Sbjct: 240 AHITHPLVGD 249
>RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 84.7 bits (208), Expect = 2e-16 Identities = 51/130 (39%), Positives = 70/130 (53%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L E + I R Y ++ G + ++ Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDE 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 PISR P R M H K A + Y++ E F + RLETGRTHQIR H Sbjct: 187 PISRHPTKRTHMAV-----HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGD 654 ++ +PL+GD Sbjct: 240 AHITHPLVGD 249
>RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 84.0 bits (206), Expect = 4e-16 Identities = 54/135 (40%), Positives = 72/135 (53%) Frame = +1 Query: 250 EVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNS 429 EV E + R GIVHRLDK T+GL+VVAK + +L + I R Y ++ G + Sbjct: 125 EVAE-VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIGRMTAGG 183 Query: 430 ARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQ 609 +++ PI R R M +P K A + ++V E F + RLETGRTHQ Sbjct: 184 -KVDKPIGRHATKRTLMAVSP-----MGKPAVTHFRVAEHF--REHTRIRLRLETGRTHQ 235 Query: 610 IRAHAKYLGNPLLGD 654 IR H YL +PLLGD Sbjct: 236 IRVHMSYLQHPLLGD 250
>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 302 Score = 83.6 bits (205), Expect = 5e-16 Identities = 50/124 (40%), Positives = 66/124 (53%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD+ TSG +V AK +HA L +Q + T+ R Y ++ G I PI RD Sbjct: 134 VHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRTKKGTINPPIGRDR 193 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 ++ R +PG + A + +KV +LVE LETGRTHQIR H LG+P Sbjct: 194 SHPTRRRVSPG-----GQTAVTHFKVMASNAKERLSLVELELETGRTHQIRVHLASLGHP 248 Query: 643 LLGD 654 L GD Sbjct: 249 LTGD 252
>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 82.8 bits (203), Expect = 8e-16 Identities = 48/132 (36%), Positives = 71/132 (53%) Frame = +1 Query: 265 IVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEV 444 + R GIVHRLDK T+GL+VVAK + +L + I R Y ++ G+ + ++ Sbjct: 128 VPRAGIVHRLDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGT-VDQ 186 Query: 445 PISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHA 624 P++R R M H K A + Y++ E + + RLETGRTHQIR H Sbjct: 187 PMARHATKRTLMAV-----HPMGKPAVTHYRIMENY--RNYTRLRLRLETGRTHQIRVHM 239 Query: 625 KYLGNPLLGDET 660 ++ +PLLGD+T Sbjct: 240 AHIAHPLLGDQT 251
>RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 312 Score = 73.9 bits (180), Expect(2) = 1e-15 Identities = 62/191 (32%), Positives = 81/191 (42%) Frame = +1 Query: 82 GNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVRE 261 GN +GT++NA+L+H K S + Sbjct: 109 GNKSGTILNALLYHYKNS-----------------------------------------K 127 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 + R GIVHRLDK TSGL+V+AK+ S+ L K I R Y + G I Sbjct: 128 DLPRAGIVHRLDKDTSGLMVIAKNIFSYNHLLLLLKEKKIIREYEGIVHGKMIAGGT-IN 186 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 PI R N R M+ H K + + YKV F + RLETGRTHQIR H Sbjct: 187 KPIMRHYNRRTCMMV-----HHLGKPSVTHYKVLSRF--KFHTHIAIRLETGRTHQIRVH 239 Query: 622 AKYLGNPLLGD 654 ++ PL+GD Sbjct: 240 MLHIKYPLVGD 250 Score = 28.5 bits (62), Expect(2) = 1e-15 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 33 LLVVNKPAHMVVHPAPG 83 +L++NKPA +VVHP G Sbjct: 93 ILIINKPAGLVVHPGSG 109
>RLUD_BUCBP (Q89AD9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 317 Score = 77.8 bits (190), Expect(2) = 2e-15 Identities = 62/193 (32%), Positives = 89/193 (46%) Frame = +1 Query: 82 GNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVRE 261 GN +GTL+NA+LH + STF Sbjct: 110 GNTSGTLLNALLH--RDSTFF--------------------------------------- 128 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 I R GIVHRLDK T+GL+V+AK+ S+ L +Q K + R Y ++ G + I Sbjct: 129 NIPRAGIVHRLDKDTTGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYG-KVISGGTIV 187 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 I R+P R M+ ++ K A + Y++ + F ++ LETGRTHQIR H Sbjct: 188 KSIIRNPIKRTTMIV-----NKCGKRAITHYRILKRFT--HHTHLKIILETGRTHQIRTH 240 Query: 622 AKYLGNPLLGDET 660 Y+ PL+GD+T Sbjct: 241 MLYINFPLVGDKT 253 Score = 24.3 bits (51), Expect(2) = 2e-15 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 27 EHLLVVNKPAHMVVHPAPG 83 + +LV+NK + VVHP G Sbjct: 92 DDILVINKQDNFVVHPGAG 110
>RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 80.1 bits (196), Expect = 5e-15 Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 4/141 (2%) Frame = +1 Query: 247 SEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPN 426 S ++E +VHRLD TSGL+V AK++ + A L +QF+ ++VY + G + Sbjct: 48 SRLQEQYPEIQVVHRLDMSTSGLMVFAKNKRAEAALKKQFQYRLTHKVYYARVWGHVEAD 107 Query: 427 SARIEVPISRD-PNNRIRMVAAPGSGHRYAKHAASRYKV--REVFCGGGSALVEWRLE-T 594 S I++P+ D PN ++ V H + K + + ++V REV G + L T Sbjct: 108 SGMIDLPLICDWPNRPMQKVC-----HEHGKPSQTAFQVAKREVHANGAQTTIMRLLPVT 162 Query: 595 GRTHQIRAHAKYLGNPLLGDE 657 GR+HQ+R H + LG+P++GDE Sbjct: 163 GRSHQLRVHMQALGHPIVGDE 183
>Y505_ZYMMO (O66114) Hypothetical RNA pseudouridine synthase ZMO0505 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 219 Score = 79.3 bits (194), Expect = 9e-15 Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 6/133 (4%) Frame = +1 Query: 274 PGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPIS 453 P IVHRLD+ TSG L++A++ H +L+E F + + Y ++ GVP N I++P+ Sbjct: 51 PSIVHRLDRDTSGCLLLARNPKMHRRLSEAFSQGQVKKCYWAILEGVPEKNEGIIDLPLL 110 Query: 454 RDPNNRIRMVAAPGSGHRY-----AKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRA 618 + +++P SG R K A + +++ + G +LV +R ETGRTHQ+R Sbjct: 111 K--------ISSPKSGWRIVADDKGKRAVTHWEI--LAKNKGRSLVAFRPETGRTHQLRV 160 Query: 619 HAKY-LGNPLLGD 654 HA LG P++GD Sbjct: 161 HAATGLGLPIVGD 173
>RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 315 Score = 77.4 bits (189), Expect = 4e-14 Identities = 53/131 (40%), Positives = 68/131 (51%) Frame = +1 Query: 262 AIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIE 441 +I R GI+HRLDK TSGL+V+AK S+ +L K I R Y + G + + Sbjct: 128 SIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKG-NMISGGIVN 186 Query: 442 VPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH 621 PI R P RI M K + + YK+ F V +RLETGRTHQIR H Sbjct: 187 YPIMRHPFKRICMTT-----DSLGKKSITHYKIINRF--KFHTHVSFRLETGRTHQIRVH 239 Query: 622 AKYLGNPLLGD 654 ++G PLLGD Sbjct: 240 MLHIGYPLLGD 250
>RLUD_BLOFL (P59838) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 321 Score = 77.0 bits (188), Expect = 5e-14 Identities = 47/127 (37%), Positives = 68/127 (53%) Frame = +1 Query: 277 GIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISR 456 GIV RLDK T+GL+++AK ++ L FKL + + Y ++ G + N+ + P+ R Sbjct: 136 GIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGVVNQPMRR 195 Query: 457 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 636 R M S H K A + Y V E F + V L+TGRTHQIR H Y+ Sbjct: 196 HFAKRTFM-----SVHYTGKSAVTYYSVVEEF--KAHSRVRINLKTGRTHQIRVHMAYIN 248 Query: 637 NPLLGDE 657 +PL+GD+ Sbjct: 249 HPLVGDQ 255
>RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 74.7 bits (182), Expect = 2e-13 Identities = 45/125 (36%), Positives = 68/125 (54%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD TSG++VVA + + +L QF+ + Y++ G PSP +++P+ D Sbjct: 59 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 118 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 NR + +G K A + Y V E F +A V + TGR+HQ+R H LG+P Sbjct: 119 PNRPKQKVCYETG----KPAQTEYNVVE-FAADNTARVVLKPITGRSHQLRVHMLALGHP 173 Query: 643 LLGDE 657 +LGD+ Sbjct: 174 ILGDQ 178
>Y209_MYCGE (P47451) Hypothetical RNA pseudouridine synthase MG209 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 73.9 bits (180), Expect = 4e-13 Identities = 44/125 (35%), Positives = 70/125 (56%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG +VV K++ S L Q + T+ R Y++L + + I P++R Sbjct: 126 LVHRLDRDTSGAIVVCKNQASLLNLQNQLQNRTLKRYYVALVHFPFNALTGSINAPLARV 185 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 NN++ A + AK A +++KV + +AL+ L TGRTHQIR H K++ + Sbjct: 186 NNNKVMFKIAQTA---KAKQAITKFKV--INQNEKAALISLELLTGRTHQIRVHLKFIQH 240 Query: 640 PLLGD 654 P+ D Sbjct: 241 PVYND 245
>RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 73.9 bits (180), Expect = 4e-13 Identities = 45/124 (36%), Positives = 67/124 (54%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD TSG++VVA + + +L QF+ + Y++ G PSP +++P+ D Sbjct: 59 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 118 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 NR + +G K A + Y V E F +A V + TGR+HQ+R H LG+P Sbjct: 119 PNRPKQKVCYETG----KPAQTEYNVVE-FAADNTARVVLKPITGRSHQLRVHMLALGHP 173 Query: 643 LLGD 654 +LGD Sbjct: 174 ILGD 177
>RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 73.6 bits (179), Expect = 5e-13 Identities = 44/124 (35%), Positives = 68/124 (54%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD TSG++VVA + + +L QF+ + Y++ G PSP +++P+ D Sbjct: 59 VHRLDMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDW 118 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 NR + +G K A + Y+V E + +A V + TGR+HQ+R H LG+P Sbjct: 119 PNRPKQKVCYETG----KPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHP 173 Query: 643 LLGD 654 +LGD Sbjct: 174 ILGD 177
>RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 73.2 bits (178), Expect = 7e-13 Identities = 44/124 (35%), Positives = 68/124 (54%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD TSG++VVA + + +L QF+ + Y++ G PSP +++P+ D Sbjct: 59 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 118 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 NR + +G K A + Y+V E + +A V + TGR+HQ+R H LG+P Sbjct: 119 PNRPKQKVCYETG----KPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHP 173 Query: 643 LLGD 654 +LGD Sbjct: 174 ILGD 177
>RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 73.2 bits (178), Expect = 7e-13 Identities = 44/124 (35%), Positives = 68/124 (54%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD TSG++VVA + + +L QF+ + Y++ G PSP +++P+ D Sbjct: 59 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 118 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 NR + +G K A + Y+V E + +A V + TGR+HQ+R H LG+P Sbjct: 119 PNRPKQKVCYETG----KPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHP 173 Query: 643 LLGD 654 +LGD Sbjct: 174 ILGD 177
>RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 73.2 bits (178), Expect = 7e-13 Identities = 44/124 (35%), Positives = 68/124 (54%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD TSG++VVA + + +L QF+ + Y++ G PSP +++P+ D Sbjct: 59 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 118 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 NR + +G K A + Y+V E + +A V + TGR+HQ+R H LG+P Sbjct: 119 PNRPKQKVCYETG----KPAQTEYEVVE-YAADNTARVVLKPITGRSHQLRVHMLALGHP 173 Query: 643 LLGD 654 +LGD Sbjct: 174 ILGD 177
>RLUC_RICCN (Q92IS6) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 303 Score = 73.2 bits (178), Expect = 7e-13 Identities = 45/126 (35%), Positives = 66/126 (52%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLDK TSGLL++AK+ S +L FK + + Y ++T G P N + I + Sbjct: 135 LVHRLDKKTSGLLLIAKNYLSSVKLHNAFKEKLVVKTYFAVTYGKPIKNVGEVRSNIEKS 194 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 + ++ K A + YKV + L+E+ TGR HQ+R HAK LG Sbjct: 195 KGSTPKITDIDSEN---GKLAITYYKVLKSL-DNNLFLIEFTPVTGRMHQLRLHAKLLGC 250 Query: 640 PLLGDE 657 P+LGD+ Sbjct: 251 PILGDD 256
>YJBO_BACSU (O31613) Hypothetical RNA pseudouridine synthase yjbO (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 283 Score = 73.2 bits (178), Expect = 7e-13 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +V RLD+ TSG+++VAK +H+ L+ K + R Y ++ G + ++ PI R Sbjct: 116 LVTRLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRH 175 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS-ALVEWRLETGRTHQIRAHAKYLG 636 P++ I P G + H V C V +LETGRTHQIR H YLG Sbjct: 176 PDSIIERTVTP-DGQKAVTHF-------YVTCANDDMTSVALQLETGRTHQIRVHMSYLG 227 Query: 637 NPLLGD 654 +PL GD Sbjct: 228 HPLCGD 233
>RLUC_VIBCH (Q9KQH0) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 72.4 bits (176), Expect = 1e-12 Identities = 42/126 (33%), Positives = 68/126 (53%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHR+D+ TSG+L+VAK + L QF+ T+ + Y +L G + P+ ++ Sbjct: 141 LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKN 200 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 N I V G K + +R+++ E F + LV+ TGRTHQIR H +Y+G+ Sbjct: 201 EVNSIVRVNPNG------KPSETRFRILEKF--AEATLVQASPVTGRTHQIRVHTQYMGH 252 Query: 640 PLLGDE 657 P+ D+ Sbjct: 253 PIAWDD 258
>RLUC_VIBPA (Q87N15) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 72.0 bits (175), Expect = 1e-12 Identities = 42/126 (33%), Positives = 68/126 (53%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHR+D+ TSG+L+VAK + L QF+ T+ + Y +L G + + P+ ++ Sbjct: 140 LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVKKFYFALVMGQWKSSCKVVNAPLLKN 199 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 N I V G K + +R+K+ E F + L++ TGRTHQIR H +Y G+ Sbjct: 200 EVNSIVRVNPNG------KPSETRFKILEKF--EQATLIQASPITGRTHQIRVHTQYTGH 251 Query: 640 PLLGDE 657 P+ D+ Sbjct: 252 PIAWDD 257
>RLUC_VIBVU (Q8D8G1) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 71.6 bits (174), Expect = 2e-12 Identities = 44/126 (34%), Positives = 68/126 (53%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHR+D+ TSG+L+VAK + L QF+ T+ + Y +L G + + P+ ++ Sbjct: 140 LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYFALVMGEWKNSCKVVNAPLLKN 199 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 N I V G K + +R+KV E F + LV+ TGRTHQIR H +Y G+ Sbjct: 200 EVNSIVRVNPNG------KPSETRFKVIEKF--PQATLVQASPITGRTHQIRVHTQYSGH 251 Query: 640 PLLGDE 657 P+ D+ Sbjct: 252 PIAWDD 257
>RLUA_VIBCH (Q9KP71) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 245 Score = 71.6 bits (174), Expect = 2e-12 Identities = 41/126 (32%), Positives = 69/126 (54%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD TSGL++ AK +H + L +QF+ +++Y + GV N + +P+ D Sbjct: 59 VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD 118 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 NR + G + + +RY+V V + +V TGR+HQ+R H + LG+ Sbjct: 119 WPNRPKQKVCFEEG----RDSLTRYQV--VKREEKTTVVRLIPITGRSHQLRVHMQSLGH 172 Query: 640 PLLGDE 657 P++GD+ Sbjct: 173 PIVGDD 178
>Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG209 homolog (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (H10_orf309) Length = 309 Score = 71.2 bits (173), Expect = 3e-12 Identities = 41/125 (32%), Positives = 70/125 (56%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG++++AK++ S L +Q + + R Y++L S I P+ R Sbjct: 126 LVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISAPLERV 185 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 NN++ G+ AK+A +++ V +AL++ L TGRTHQIR H +++ + Sbjct: 186 GNNKVMWKV--GNSSNKAKNAFTKFTVLNQ--NEKAALIKCELLTGRTHQIRVHLQFIKH 241 Query: 640 PLLGD 654 P+ D Sbjct: 242 PVYND 246
>RLUC_RICPR (Q9ZDR7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 303 Score = 70.9 bits (172), Expect = 3e-12 Identities = 46/126 (36%), Positives = 69/126 (54%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLDK TSGLL++AK+ S +L FK + + Y ++T G P N ++ I + Sbjct: 135 LVHRLDKETSGLLLIAKNYLSSVKLHNAFKEKLVIKKYFAITYGRPVKNVGTVKSNIGKS 194 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 R+ +A S K A + YK+ + L+E+ TGR HQ+R HA+ LG Sbjct: 195 -KRRLSKIANIDSDD--GKLAITYYKLLKSL-NNNLFLIEFMPVTGRMHQLRLHAQLLGC 250 Query: 640 PLLGDE 657 P+LGD+ Sbjct: 251 PILGDD 256
>RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 70.5 bits (171), Expect = 4e-12 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 2/128 (1%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD TSGL+V+AK++ + + L +QF+ +++Y + G I++P+ D Sbjct: 59 VVHRLDMSTSGLMVLAKNKRAESALKKQFQFRLTHKIYYARVWGHVEQEEGEIDLPLICD 118 Query: 460 -PNNRIRMVA-APGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYL 633 PN ++ V G + A R + + G + +V TGR+HQ+R H + L Sbjct: 119 WPNRPLQKVCFEDGKPSKTLFQVAKREEQED---GTKTTIVRLLPITGRSHQLRVHMQAL 175 Query: 634 GNPLLGDE 657 G+P++GDE Sbjct: 176 GHPIVGDE 183
>RLUC_YERPE (Q8ZFU1) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 320 Score = 70.1 bits (170), Expect = 6e-12 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ +L ++ + Y++L G + I+ P+ ++ Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKN 198 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 R+ V++ G K + +R+K+ E F + LV+ TGRTHQIR HA + Sbjct: 199 IMQSGERVVKVSSEG------KPSETRFKIEERF--EHATLVKASPVTGRTHQIRVHALH 250 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 251 AGHPIAFDD 259
>YK27_CAEEL (O16686) Hypothetical protein K07E8.7 in chromosome IV| Length = 432 Score = 68.2 bits (165), Expect = 2e-11 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Frame = +1 Query: 223 QFTIGEVSSEVREAIVRPG--IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYI 396 Q+ I V ++R R G ++HRLD+ TSG+L+ AK+ + + K ++ YI Sbjct: 173 QYAIHTVLGQLRVNEGRTGLRVLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYI 232 Query: 397 SLTCGVPSPNSARIEVPISRDPNNR-IRMVAAPGSGHRYAKHAASRYKVREVFCGGGSAL 573 GV E PI + I+ V G K A SR+ R+++ G ++ Sbjct: 233 CKVDGVFPDEEQVCEQPIGPLVISMGIQCVRPDG------KDAKSRF--RKLWSDGTQSV 284 Query: 574 VEWRLETGRTHQIRAHAKYLGNPLLGDE 657 V+ +ETGRTHQIR H+++LG+P+ GD+ Sbjct: 285 VQVHIETGRTHQIRVHSQFLGHPIAGDQ 312
>RLUC_BUCAI (P57430) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 314 Score = 66.6 bits (161), Expect = 6e-11 Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISR- 456 +VHR+D+ TSG+L++AK S L EQ + I + YI+L G+ + +I P+ + Sbjct: 138 LVHRIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALVHGLWPDHIKKISEPLLKI 197 Query: 457 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 636 N+ +MV G K + + +++++ F S L+ +TGRTHQIR HA + G Sbjct: 198 QFKNKQKMVLIDKKG----KPSETYFQIKKKF--SSSTLLSIIPKTGRTHQIRVHALHAG 251 Query: 637 NPLLGDE 657 +P+ D+ Sbjct: 252 HPIFFDK 258
>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 66.2 bits (160), Expect = 8e-11 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ + + + Y++L G + ++ P+ ++ Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+KV E + + LV TGRTHQIR H +Y Sbjct: 199 ILQSGERIVRVSQEG------KPSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQY 250 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 251 AGHPIAFDD 259
>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 66.2 bits (160), Expect = 8e-11 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ + + + Y++L G + ++ P+ ++ Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKN 198 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+KV E + + LV TGRTHQIR H +Y Sbjct: 199 ILQSGERIVRVSQEG------KPSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQY 250 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 251 AGHPIAFDD 259
>RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 66.2 bits (160), Expect = 8e-11 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ + + + Y++L G + ++ P+ ++ Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKN 198 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+KV E + + LV TGRTHQIR H +Y Sbjct: 199 ILQSGERIVRVSQEG------KPSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQY 250 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 251 AGHPIAFDD 259
>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 66.2 bits (160), Expect = 8e-11 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ + + + Y++L G + ++ P+ ++ Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+KV E + + LV TGRTHQIR H +Y Sbjct: 199 ILQSGERIVRVSQEG------KPSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQY 250 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 251 AGHPIAFDD 259
>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 66.2 bits (160), Expect = 8e-11 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ + + + Y++L G + ++ P+ ++ Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+KV E + + LV TGRTHQIR H +Y Sbjct: 199 ILQSGERIVRVSQEG------KPSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQY 250 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 251 AGHPIAFDD 259
>RLUC_HAEIN (P44433) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 322 Score = 65.9 bits (159), Expect = 1e-10 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L++AK + L EQ ++ T+ + Y++L G + I+ + ++ Sbjct: 144 LVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQSHIKVIQASLLKN 203 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+ + E + + LV+ TGRTHQIR H +Y Sbjct: 204 ELSSGERIVRVSEQG------KPSETRFSIEERYI--NATLVKASPVTGRTHQIRVHTQY 255 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 256 AGHPIALDD 264
>RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 326 Score = 65.9 bits (159), Expect = 1e-10 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ + T+ + Y++L G + ++ P+ ++ Sbjct: 145 LVHRLDRDTSGILLVAKKRSALRSLHEQLREKTVQKDYLALVRGQWQSHCKVVKAPLLKN 204 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+ + E + + LV+ TGRTHQIR H +Y Sbjct: 205 ELSSGERIVRVSEQG------KPSETRFSIEERY--EYATLVKASPVTGRTHQIRVHTQY 256 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 257 AGHPIALDD 265
>RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 65.1 bits (157), Expect = 2e-10 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLD+ TSG+L+VAK + L EQ + + + Y++L G ++ P+ ++ Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSYVKSVQAPLLKN 198 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+KV E + + LV TGRTHQIR H +Y Sbjct: 199 ILQSGERIVRVSQEG------KPSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQY 250 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 251 AGHPIAFDD 259
>RIB2_YEAST (Q12362) DRAP deaminase| Length = 591 Score = 64.7 bits (156), Expect = 2e-10 Identities = 39/123 (31%), Positives = 65/123 (52%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 +RLDK TSGL+ +AK ++ +Q K + + Y++ G ++ P+ R N Sbjct: 208 NRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIGIVEVDKPV-RSVN 266 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPL 645 ++ + A AKHA + ++ V G +++V+ + TGRTHQIR H +YLG P+ Sbjct: 267 PKVALNAVCEMSDENAKHAKTVFQ--RVSYDGQTSIVKCKPLTGRTHQIRVHLQYLGFPI 324 Query: 646 LGD 654 D Sbjct: 325 AND 327
>RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 206 Score = 63.9 bits (154), Expect = 4e-10 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD TSG++VVA + + +L QF+ + YI+ G + + I++P+ D Sbjct: 47 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKTYIARVWGHLAQDEGLIDLPLICDW 106 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKV--REVFCGGGSALVEWRLETGRTHQIRAHAKYLG 636 NR + +G K A + Y+V R+ GS V+ TGR+HQ+R H +G Sbjct: 107 PNRPKQKVCYETG----KSAQTEYQVISRD---DDGSTRVKLSPITGRSHQLRVHMLAMG 159 Query: 637 NPLLGD 654 +P+LGD Sbjct: 160 HPILGD 165
>RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 320 Score = 63.2 bits (152), Expect = 7e-10 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHR+D+ TSG+L+VAK + L EQ + + + Y++L G + I+ P+ ++ Sbjct: 142 LVHRIDRDTSGILLVAKKRSALRALHEQLREKVVQKDYLALVRGQWQAHINVIKAPLLKN 201 Query: 460 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 RI V+ G K + +R+ + E + + L++ TGRTHQIR H +Y Sbjct: 202 ELQSGERIVKVSEQG------KPSETRFSIEERY--PNATLIKASPITGRTHQIRVHTQY 253 Query: 631 LGNPLLGDE 657 G+P+ D+ Sbjct: 254 AGHPIACDD 262
>RLUC_BUCAP (Q8K9J8) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 314 Score = 62.4 bits (150), Expect = 1e-09 Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 1/127 (0%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHR+D+ TSG+L++AK S L +Q + + + YI+L G+ + ++ P+ + Sbjct: 138 LVHRIDRDTSGVLMLAKKRRSLLSLHKQIREKKVQKKYIALVHGLWPLSLRKVSEPLLKT 197 Query: 460 P-NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 636 N+ R + G K A + +K+++ + + LV +TGRTHQIR H + G Sbjct: 198 HLKNKQRKILINKEG----KPAETYFKIKKQYL--FTTLVSITPKTGRTHQIRVHTLHAG 251 Query: 637 NPLLGDE 657 +P+L D+ Sbjct: 252 HPILFDK 258
>RLUC_PSEAE (Q9HZM9) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 318 Score = 62.0 bits (149), Expect = 2e-09 Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Frame = +1 Query: 238 EVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTI-NRVYISLTCGV 414 EV ++R +VHRLD+ TSGLL++AK L E + I ++ Y +L G Sbjct: 127 EVFRQLRPDAKDIELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGH 186 Query: 415 PSPNSARIEVPISRDP-NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLE 591 + P+ ++ + RMV G K A + ++V F G + LVE R Sbjct: 187 WPAGKKNVRAPLLKNNLRSGERMVEVNVEG----KDALTEFRVLRRF-GDFATLVEARPI 241 Query: 592 TGRTHQIRAHAKYLGNPLLGD 654 TGRTHQIR HAK+ G+ + GD Sbjct: 242 TGRTHQIRVHAKHAGHAIAGD 262
>Y042_HAEIN (P43930) Hypothetical RNA pseudouridine synthase HI0042 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 224 Score = 61.2 bits (147), Expect = 3e-09 Identities = 39/125 (31%), Positives = 64/125 (51%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 459 +VHRLDK TSGLL++A + S A+ + F H I++ Y++L+ P I + + Sbjct: 47 LVHRLDKVTSGLLILALNAESAAEFSRLFSEHKIHKTYLALSNQKPKKKQGLIIGDMKKA 106 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 ++ + A +R++ V C L + +TG+THQ+R K LG+ Sbjct: 107 REGAWKLCQTKDN------PAITRFE--SVSCEPNLRLFILKPQTGKTHQLRVAMKSLGS 158 Query: 640 PLLGD 654 P+LGD Sbjct: 159 PILGD 163
>YD36C_YEAST (Q12069) Hypothetical 53.4 kDa protein in PRP9-NAT1 intergenic| region Length = 462 Score = 60.5 bits (145), Expect = 4e-09 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISR-DP 462 +RLD+ TSGL+ +AK + +Q K + + Y++ G +E P+ +P Sbjct: 235 NRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIEP 294 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 R+ + A + AKHA + + + G +++V+ + TGR+HQIR H +YLG+P Sbjct: 295 --RLALNAVCQMDEKGAKHAKTVFN--RISYDGKTSIVKCKPLTGRSHQIRVHLQYLGHP 350 Query: 643 LLGD 654 + D Sbjct: 351 IAND 354
>RLUA_HAEDU (P59831) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 222 Score = 58.9 bits (141), Expect = 1e-08 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPN---SARIEVPISR 456 HRLD TSG++++A + + +L QF+ + YI+L G + I P+ Sbjct: 61 HRLDMATSGIILLALSKVAEKELKRQFRDREPKKHYIALLWGKLGDRVGQTGEINFPLIC 120 Query: 457 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 636 D NR R G K A + Y+V E + V++ TGR+HQ+R H+ LG Sbjct: 121 DWENRPRQKICYERG----KKATTHYEVLE-HLANNTTRVKFTPITGRSHQLRVHSLALG 175 Query: 637 NPLLGDE 657 +P++GD+ Sbjct: 176 HPIIGDK 182
>Y1592_SYNY3 (P72970) Hypothetical RNA pseudouridine synthase slr1592 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 291 Score = 58.2 bits (139), Expect = 2e-08 Identities = 38/124 (30%), Positives = 56/124 (45%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 +HRL GTSGLL++ + +L+ QF+ H ++Y ++ P I + P Sbjct: 108 LHRLGTGTSGLLLLGRSTLGRRELSRQFREHICRKIYRTVIGPCDLPEKFECHQAIGKIP 167 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 642 ++ + A S H + R R +E + TGR HQIR H LG P Sbjct: 168 YPQLGYIYA-ASSHGKPAQSYGRILAR----SPEKTWLEVEIRTGRPHQIRIHLASLGYP 222 Query: 643 LLGD 654 LLGD Sbjct: 223 LLGD 226
>TRUC_HAEDU (P59840) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 243 Score = 58.2 bits (139), Expect = 2e-08 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 +HRLD+ TSG+L+ A + ++EQF+ H + + Y+++ G + I+ P+ Sbjct: 51 IHRLDRPTSGVLLFALNSEMARLMSEQFEQHKVEKEYLAIVRGYIA-EKGEIDYPLKVIL 109 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRL-----ETGRTHQIRAHAK 627 + + P + + + KV + G A + L +TGR HQ+R H K Sbjct: 110 DKIADKFSQPKAAQQAVTFYQNLAKVEMPYSTGKYATTRYSLVALSPKTGRKHQLRRHMK 169 Query: 628 YLGNPLLGD 654 +L +P++GD Sbjct: 170 HLFHPIMGD 178
>RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 219 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/124 (31%), Positives = 61/124 (49%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD TSGL++ A + + +L QF+ + Y +L G + + +P+ D Sbjct: 61 HRLDMSTSGLILFALSKVADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWE 120 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPL 645 NR R G K A + Y+V + + V+ TGR+HQ+R H LG+P+ Sbjct: 121 NRPRQKICFERG----KPALTLYEVLARY-PNNTTRVKLTPITGRSHQLRLHMLALGHPI 175 Query: 646 LGDE 657 LGD+ Sbjct: 176 LGDK 179
>RLUC_BUCBP (Q89AH2) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 55.5 bits (132), Expect = 1e-07 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPI--- 450 +VHRLD+ TSG+L++AK L EQ + I + Y++L GV I P+ Sbjct: 139 LVHRLDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWPDILKSISKPLLKT 198 Query: 451 SRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 630 S N I + G K + + + +++ + + L+ TGRTHQIR H + Sbjct: 199 SSRKNKNIVKIDPKG------KESITHFNIKKKYT--KNTLISITPITGRTHQIRVHLLH 250 Query: 631 LGNPLLGD 654 L P++ D Sbjct: 251 LNYPIVLD 258
>Y956_HELPY (O25610) Hypothetical RNA pseudouridine synthase HP0956 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 242 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHS-HAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISR 456 ++HRLDK TSG++++ K+ H + + FK + + Y++LT G+ I PI Sbjct: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILT 146 Query: 457 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 636 + A + + A + ++ L++ ++TGRTHQIR H K++ Sbjct: 147 -----FKTTKAFSKISKKGQEAVTIITPLKII--NKKTLLKVGIKTGRTHQIRVHLKHIN 199 Query: 637 NPLLGD 654 +P++GD Sbjct: 200 HPIIGD 205
>RLUA_HAEIN (P44782) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 219 Score = 54.3 bits (129), Expect = 3e-07 Identities = 38/124 (30%), Positives = 61/124 (49%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD TSG++V A + + +L QF+ + Y ++ G + + +P+ D Sbjct: 61 HRLDMATSGIIVFALSKAADRELKRQFREREPKKHYQAIVWGHLENDYGEVNLPMICDWE 120 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPL 645 NR R G K A ++++V S V+ TGR+HQ+R H LG+P+ Sbjct: 121 NRPRQRLDFVLG----KRAVTKFEVL-ARLPNNSTRVKLTPVTGRSHQLRLHMLALGHPI 175 Query: 646 LGDE 657 LGD+ Sbjct: 176 LGDK 179
>Y956_HELPJ (Q9ZKP5) Hypothetical RNA pseudouridine synthase jhp_0890 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 242 Score = 54.3 bits (129), Expect = 3e-07 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHS-HAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISR 456 ++HRLDK TSG++++ K+ H + + FK + + Y+++ G+ I PI Sbjct: 88 LLHRLDKETSGVILLVKENSEFHLKAKKAFKDRAVKKEYLAIVQGIIE-EEREINAPILT 146 Query: 457 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 636 I+ A + + A + ++ L++ ++TGRTHQIR H K++ Sbjct: 147 -----IKTTKAFSKISKKGQEAVTIITPLKII--NKKTLLKVGIKTGRTHQIRVHLKHIN 199 Query: 637 NPLLGD 654 +P++GD Sbjct: 200 HPIIGD 205
>PUS6_YEAST (P53294) Pseudouridylate synthase 6 (EC 5.4.99.-) (Pseudouridine| synthase 6) (tRNA pseudouridine 31 synthase) (PSI31 synthase) (Uracil hydrolyase) Length = 404 Score = 51.2 bits (121), Expect = 3e-06 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 14/137 (10%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCG--------VPSPNSARI- 438 +RLDK TSGLL++AK+ S ++ + + + ++Y++ G + + N+A Sbjct: 165 YRLDKITSGLLILAKNSQSAGEIQKSIRSRDMIKIYLARVKGRFPHSELILDNENAAETT 224 Query: 439 -----EVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRT 603 +V + P I G +K A +++ F +V + TGRT Sbjct: 225 FEDTSKVTVEMTPIYSIDPKRQFPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRT 284 Query: 604 HQIRAHAKYLGNPLLGD 654 HQIR H LG+P++ D Sbjct: 285 HQIRIHLARLGHPIVND 301
>TRUC_ECOL6 (Q8FEF9) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 51.2 bits (121), Expect = 3e-06 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P++ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLAEELD 109 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 627 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 628 YLGNPLLGD 654 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>Y370_MYCGE (P47610) Hypothetical RNA pseudouridine synthase MG370 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 323 Score = 50.8 bits (120), Expect = 4e-06 Identities = 36/128 (28%), Positives = 60/128 (46%) Frame = +1 Query: 274 PGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPIS 453 P HR+D+ TSG+++ AK + +L + FK + + + Y L G N ++ Sbjct: 141 PQFAHRIDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFG--QFNHLGLQTAYW 198 Query: 454 RDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYL 633 + NN +V AK ++ ++ +L+ RL +GRTHQIRA Sbjct: 199 KKDNNN-GIVTVKWKPFPEAKKISTFFENSSYIAQKDMSLITIRLISGRTHQIRACLNLF 257 Query: 634 GNPLLGDE 657 N L+GD+ Sbjct: 258 SNQLVGDK 265
>TRUC_SHIFL (P0AA42) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELD 109 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 627 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 628 YLGNPLLGD 654 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_ECOLI (P0AA41) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELD 109 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 627 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 628 YLGNPLLGD 654 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_ECO57 (Q8X6T6) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELD 109 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 627 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 628 YLGNPLLGD 654 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>YA32_SCHPO (Q09709) Hypothetical protein C18B11.02c in chromosome I| Length = 394 Score = 50.1 bits (118), Expect = 6e-06 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRV----YISLTCGVPSPNSARI--EVP 447 +RLD+ TSGL+ +K + AE+ ++H I++ Y++ G PNS + + P Sbjct: 153 NRLDRLTSGLMFFSKSPKA----AEEMRVHMISKSLKKEYVARVIG-EFPNSGEVICDAP 207 Query: 448 ISRDPNNRIRMVAAPGSG----HRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIR 615 + + AP G H K A++ +K + G ++LV + TGRTHQ+R Sbjct: 208 L---------LTVAPTLGLNRIHPDGKEASTVFK--RIAFDGHTSLVLCKPLTGRTHQLR 256 Query: 616 AHAKYLGNPLLGD 654 H +YLG P+ D Sbjct: 257 VHLQYLGYPIAND 269
>TRUC_YERPE (Q8ZH72) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 257 Score = 49.7 bits (117), Expect = 8e-06 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 11/137 (8%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSA-----RIEVP 447 VHRLD+ TSG+L++A L+ QF+ H I + Y ++ G E+ Sbjct: 50 VHRLDRPTSGVLLMALSSDVARMLSLQFEQHQIQKTYHAVVRGYVLEGGTVDYAMAEELD 109 Query: 448 ISRDPNNRIRMVAAPGSGHRYAKH------AASRYKVREVFCGGGSALVEWRLETGRTHQ 609 D + P H A A RY+ +LV + ETGR HQ Sbjct: 110 KIADKFAKSDKAPQPSVSHYEALAQVEVPLAIGRYETARY------SLVALKPETGRKHQ 163 Query: 610 IRAHAKYLGNPLLGDET 660 +R H ++ +P++GD T Sbjct: 164 LRRHMAHIRHPIIGDST 180
>TRUC_SALTY (Q8ZMD5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 49.7 bits (117), Expect = 8e-06 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD+ TSG+L++ + +LA+QF+ H I + Y ++ G + A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGW-LMDDAVLDYPLVEERD 109 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 627 A + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 628 YLGNPLLGD 654 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_SALTI (Q8Z439) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 49.3 bits (116), Expect = 1e-05 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD+ TSG+L++ + +LA+QF+ H I + Y ++ G + A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGW-LIDDAVLDYPLVEERD 109 Query: 466 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 627 A + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 628 YLGNPLLGD 654 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 376 Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD+ TSG+L++A L++QF+ H + + Y ++ G + I+ ++ + Sbjct: 164 VHRLDRPTSGVLLLALSSEVARALSQQFESHQMQKTYHAVVRGYVLDDGV-IDYALTEEL 222 Query: 463 NNRIRMVAAPGSGHRYA-KHAASRYKVREVFCGG-----GSALVEWRLETGRTHQIRAHA 624 + P + A H S + G +L+E + +TGR HQ+R H Sbjct: 223 DKIADKFTNPDKAPQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHM 282 Query: 625 KYLGNPLLGD 654 ++ +P++GD Sbjct: 283 SHIHHPIIGD 292
>TRUC_VIBPA (Q87MD4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 246 Score = 47.8 bits (112), Expect = 3e-05 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 10/134 (7%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCG-VPSPNSARIEVPISRD 459 +HRLD+ TSG+LV A +Q+ F H + + Y ++ G + + + D Sbjct: 54 LHRLDRPTSGVLVFALSSEVASQVMPMFAEHKMEKTYHAIVRGWIEEEGVLDYALKVELD 113 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVR---EVFCGGGS------ALVEWRLETGRTHQI 612 ++ S + A+ A + YK EV G L+E + +TGR HQ+ Sbjct: 114 -----KIADKFASQEKEAQEAVTAYKPLAKVEVPYSTGKFPTTRYCLMEMKPKTGRKHQL 168 Query: 613 RAHAKYLGNPLLGD 654 R H +L +P++GD Sbjct: 169 RRHMAHLRHPIVGD 182
>TRUC_VIBCH (Q9KTL4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 244 Score = 47.4 bits (111), Expect = 4e-05 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 +HRLD+ TSG+LV A +++ F H + + Y ++ G + ++ P+ + Sbjct: 50 LHRLDRPTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEANV-LDYPLKEEL 108 Query: 463 NNRIRMVAAPGSGHRYAKHAASRY----KVREVFCGGGSA-----LVEWRLETGRTHQIR 615 + A + A+ A + Y KV G A L+E + +TGR HQ+R Sbjct: 109 DKIADKFAKQD---KEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLR 165 Query: 616 AHAKYLGNPLLGDET 660 H +L +P++GD T Sbjct: 166 RHMAHLRHPIVGDTT 180
>TRUC_PASMU (Q9CNF3) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 243 Score = 46.2 bits (108), Expect = 9e-05 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 9/133 (6%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 +HRLD+ TSG+L+ A L QF+ + + Y+++ G RI+ P+ Sbjct: 51 IHRLDRPTSGVLLFALSSEVANLLCLQFENKQVQKSYLAIVRGY-LVGEGRIDYPLKVQL 109 Query: 463 NNRIRMVAAPGSGHRYAKHAASRY----KVREVFCGGGSALVEWRL-----ETGRTHQIR 615 + A + + A + Y KV +C + L TGR HQ+R Sbjct: 110 DKIADKFA---QDDKAPQEAVTDYLGLAKVEMPYCVKKYPTTRYSLVRLIPHTGRKHQLR 166 Query: 616 AHAKYLGNPLLGD 654 H K+L +P+LGD Sbjct: 167 RHMKHLFHPILGD 179
>TRUC_VIBVU (Q8DBG5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 245 Score = 44.7 bits (104), Expect = 3e-04 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCG-VPSPNSARIEVPISRD 459 +HRLD+ TSG+LV A +Q+ F +++ Y ++ G + + + D Sbjct: 50 LHRLDRPTSGVLVFALSSEVASQVMPMFAGQEMSKTYHAIVRGWIEEEGELDYALKVELD 109 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKV---------REVFCGGGSALVEWRLETGRTHQI 612 ++ S + A+ A + YK F L+E + +TGR HQ+ Sbjct: 110 -----KIADKFASQEKEAQDAITLYKPLAKVEVPYSTSKFPTTRYGLMELKPKTGRKHQL 164 Query: 613 RAHAKYLGNPLLGDET 660 R H +L +P++GD T Sbjct: 165 RRHMAHLRHPIVGDTT 180
>TRUC_HAEIN (P44197) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 239 Score = 44.3 bits (103), Expect = 3e-04 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPI---- 450 +HRLD+ TSG+L+ A + EQF+ + + Y+++ G RI+ P+ Sbjct: 50 IHRLDRPTSGVLLFALSSEIANLMCEQFEQKYVQKSYLAVVRGY-LQGKERIDYPLKIQL 108 Query: 451 ----------SRDPNNRI------RMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEW 582 ++P I ++V P RY +RY +LV+ Sbjct: 109 DKIADKFSQEDKEPQEAITDYEGLKIVEMPYPAGRY---QTARY-----------SLVKL 154 Query: 583 RLETGRTHQIRAHAKYLGNPLLGD 654 TGR H +R H K++ +P+ GD Sbjct: 155 IPHTGRKHXLRXHMKHVFHPIXGD 178
>Y714_MYCCT (P45614) Hypothetical RNA pseudouridine synthase MCAP_0714 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (ORF2) Length = 302 Score = 43.5 bits (101), Expect = 6e-04 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKL-HTINRVYISLTCGVPSPNSARIEVPISRD 459 VHRLDK TSGL++ AK++ S L FK IN+ Y +LT + N ++V + Sbjct: 137 VHRLDKLTSGLVIYAKNKISSIILTNAFKTKDQINKYYYALTSYDWNLNDF-LQVNGYIN 195 Query: 460 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 639 N+ + K+ + +K+ L+ +L TG+ HQIR+ + N Sbjct: 196 YNSNTQKADFSLVEKNNYKYCQTEFKL------VNKNLILVKLITGKKHQIRSVLSFYNN 249 Query: 640 PLLGD 654 P+L D Sbjct: 250 PILND 254
>Y548_MYCPN (P75230) Hypothetical RNA pseudouridine synthase MG370 homolog (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (G12_orf326) Length = 326 Score = 41.2 bits (95), Expect = 0.003 Identities = 34/127 (26%), Positives = 58/127 (45%) Frame = +1 Query: 274 PGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPIS 453 P HR+D+ T GL++ AK + +L F+ + + + Y L G P + + Sbjct: 140 PRFAHRIDRNTCGLVIGAKTNQALQELEAVFRHNLLMKQYQGLVFG-PFNFKGTQKAYWA 198 Query: 454 RDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYL 633 +D + V A + AK + ++ + +L+ RL +G+THQIRA L Sbjct: 199 KDAYQALVTVKAKPFPN--AKPITTIFENSKYLTKLDLSLLTIRLVSGKTHQIRACLNLL 256 Query: 634 GNPLLGD 654 L+GD Sbjct: 257 NTQLVGD 263
>Y347_HELPY (O25114) Hypothetical RNA pseudouridine synthase HP0347 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 298 Score = 38.5 bits (88), Expect = 0.018 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 465 HRLD TSGL++ K S L F + + Y++L G+ S +I+ PI N Sbjct: 116 HRLDYETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVE-KSMKIDKPILTPQN 174 Query: 466 NR----IRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYL 633 + IR +P K + + + +L++ TGRTHQIR H + Sbjct: 175 IQKDLHIRSKISP-----LGKQSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSV 229 Query: 634 GNPLLGD 654 + ++G+ Sbjct: 230 DHRIVGE 236
>Y347_HELPJ (Q9ZMA1) Hypothetical RNA pseudouridine synthase jhp_0321 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 293 Score = 37.4 bits (85), Expect = 0.040 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Frame = +1 Query: 286 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPN---SARIEVPISR 456 HRLD TSGL++ K S L F + + Y++L G+ + + I P + Sbjct: 116 HRLDYETSGLVLAGKTLQSTKDLKALFMQKKVKKTYLALAHGLVDKSIIINKPILTPQNI 175 Query: 457 DPNNRIRMVAAP-GSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYL 633 + RIR +P G S ++ +L++ TGRTHQIR H + Sbjct: 176 QKDLRIRSQISPLGKPSITLVEPLSYNPFLDI------SLLKITPLTGRTHQIRLHLSSV 229 Query: 634 GNPLLGD 654 + ++G+ Sbjct: 230 DHRIVGE 236
>PUS5_CANAL (Q5A0Y2) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 247 Score = 35.8 bits (81), Expect = 0.12 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLH---TINRVYISLTC--GVPSPNSARIEV 444 +V RLD+ +G LVVA+++ ++ + F + R Y+ L +P I+ Sbjct: 53 LVQRLDRFVTGGLVVARNKKWADKVRKSFFQEGTLRLTRRYVGLIALDQIPESTQGTIDF 112 Query: 445 PISR-----DPNNRIRMVAAPGSGHRYAKHAASRYKVR---EVFCGGGSALVEWRLETGR 600 PI N+ R + + Y ++R ++ VF G + LETGR Sbjct: 113 PIQALEKDYRGKNKSRELFTYSAVTHYKLIPSARRTIKGVFPVFQQGPILPIILELETGR 172 Query: 601 THQIRAH-AKYLGNPLLGDE 657 +QIR H + G PLL D+ Sbjct: 173 KNQIRDHIIQKFGVPLLNDD 192
>PUS5_DEBHA (Q6BNX8) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 339 Score = 33.1 bits (74), Expect = 0.76 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Frame = +1 Query: 280 IVHRLDKGTSGLLVVAKDEHSHA---QLAEQFKLHTINRVYISLTCGVPSPNS 429 +VHRLDK SG L++A+ ++++A + Q ++ R YI L VP PN+ Sbjct: 79 VVHRLDKYVSGGLIIARGKNANAFRKSFSNQNTNLSVKRKYIGL---VPIPNT 128
>PUS5_ASHGO (Q750S3) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 260 Score = 32.0 bits (71), Expect = 1.7 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 1/126 (0%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 462 VHRLD+ +G ++V++++ + A + L NR + P + R ++R+ Sbjct: 64 VHRLDEPVTGGVLVSRNKRAAAMFSRSLALGG-NRGF---------PLTRRYVALLAREA 113 Query: 463 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH-AKYLGN 639 P G + YK E + LV +L+TGR HQIR A+ G Sbjct: 114 KG------LPSEGRITMGDMITDYKRLE------NDLVLLQLQTGRKHQIRKQMAQVFGQ 161 Query: 640 PLLGDE 657 P++ D+ Sbjct: 162 PVVNDK 167
>YTZF_BACSU (O32068) Hypothetical RNA pseudouridine synthase ytzF (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 157 Score = 32.0 bits (71), Expect = 1.7 Identities = 29/120 (24%), Positives = 52/120 (43%) Frame = +1 Query: 289 RLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPNN 468 RLDK T G L++ D QLA + +S VP ++ ISR+ + Sbjct: 19 RLDKDTEGFLLLTND----GQLAHRL---------LSPKKHVPKTYEVHLKSQISREDIS 65 Query: 469 RIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLL 648 + G++ K A + K + G+ ++ + G+ HQ++ AK +GN ++ Sbjct: 66 DLETGVYIEGGYK-TKPAKAEIKTND----SGNTVIYLTITEGKYHQVKQMAKAVGNEVV 120
>MTR_HAEIN (P44614) Tryptophan-specific transport protein (Tryptophan| permease) Length = 418 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 383 IGYTSVLLVVYLAQILPELKFPYLVILTTGYAWL 484 +G T LV +L +L L+FPY ++ GYA L Sbjct: 323 LGRTKTTLVTFLPPLLLSLQFPYGFVIAIGYAGL 356
>TOLB_RALSO (Q8Y1F5) Protein tolB precursor| Length = 432 Score = 30.8 bits (68), Expect = 3.8 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 418 SPNSARIEVPISRDPNNRIRMVAAPGSGHR 507 SP+ R+ V +SRD N +I V A GSG R Sbjct: 250 SPDGRRVAVALSRDGNTQIYQVNADGSGLR 279
>LRTM4_MOUSE (Q80XG9) Leucine-rich repeat transmembrane neuronal protein 4| precursor Length = 590 Score = 30.8 bits (68), Expect = 3.8 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -2 Query: 625 LHVLGSGECALSPISTLPVQIHHHRRPLLLYTY*QHALHICGLIQEQQP 479 + V GSG C + + +I HH +PL Y+Y Q + C Q QP Sbjct: 498 ISVNGSGPCTYTISGSRECEIPHHVKPLPYYSYDQPVIGYC---QAHQP 543
>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1292 Score = 29.6 bits (65), Expect = 8.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 307 SGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPNNRI 474 S L+ A H++ A ++H + +ISLT GVP S + P+ P I Sbjct: 960 SKLITPAPSSLPHSRRALSPEMHAVTSEWISLTVGVPGRRSLALTPPLPPLPEASI 1015
>PUS5_YEAST (Q06244) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 254 Score = 29.6 bits (65), Expect = 8.4 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Frame = +1 Query: 283 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKL-----HTINRVYISLTCGVPSPNSARIEVP 447 VHRLD +G +++AK + + + + + + R Y+++ +S R P Sbjct: 67 VHRLDHCVTGGMLIAKTKDGSVKFSRFLQKGGNNGYKLQRKYVAIV-----ESSGRFNKP 121 Query: 448 ISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH-A 624 N + P + K +EV + +L TG+ HQIR H + Sbjct: 122 ------NNYEIKYGPKYNFLISHGGREITKFKEV----DENCIVLQLVTGKKHQIRNHVS 171 Query: 625 KYLGNPLLGDE 657 + L P+L D+ Sbjct: 172 QILNQPILNDK 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,470,144 Number of Sequences: 219361 Number of extensions: 1925419 Number of successful extensions: 5154 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 4773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5047 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
