ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6m01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 694 0.0
2gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 287 2e-74
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 287 2e-74
4dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 287 2e-74
5dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 287 2e-74
6ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridin... 78 4e-11
7ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridin... 78 4e-11
8emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Co... 78 4e-11
9dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative... 78 4e-11
10gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana... 48 0.037
11gb|CP000249.1| Frankia sp. CcI3, complete genome 46 0.15
12gb|AC150788.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
13gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
14gb|AC147480.13| Mus musculus chromosome 14, clone RP23-429N24, c... 42 2.3
15gb|AC026478.5| Mus musculus strain C57BL6/J chromosome 5 clone R... 42 2.3
16gb|AC165092.3| Mus musculus BAC clone RP23-10M2 from chromosome ... 42 2.3
17emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on ch... 42 2.3
18gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, comp... 42 2.3
19ref|NM_173450.1| Mus musculus RNA pseudouridylate synthase domai... 42 2.3
20dbj|AK043340.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 42 2.3
21dbj|AK035800.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 2.3
22dbj|AK035752.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 2.3
23dbj|AK044767.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 42 2.3
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
25ref|XM_230464.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 2.3
26emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chro... 42 2.3
27ref|XM_635322.1| Dictyostelium discoideum hypothetical protein (... 40 9.0
28ref|NM_186145.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.0
29ref|XM_422070.1| PREDICTED: Gallus gallus ribosomal protein L37a... 40 9.0
30gb|AC132584.5| Mus musculus BAC clone RP24-346B15 from chromosom... 40 9.0
31gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosom... 40 9.0
32gb|AC141108.3| Medicago truncatula clone mth2-22g6, complete seq... 40 9.0
33emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chr... 40 9.0
34ref|XM_794193.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.0
35emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section... 40 9.0
36emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 9.0
37emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7... 40 9.0
38emb|AJ293572.1|SPN293572 Streptococcus pneumoniae pce gene for t... 40 9.0
39emb|AJ272039.1|SPN272039 Streptococcus pneumoniae lytD gene for ... 40 9.0
40ref|NM_001025209.1| Strongylocentrotus purpuratus soluble adenyl... 40 9.0
41gb|AY926532.1| Strongylocentrotus purpuratus soluble adenylyl cy... 40 9.0
42gb|AF126483.2| Homo sapiens chromosome 8 clone GS1-148g17 map 8p... 40 9.0
43gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, comp... 40 9.0
44gb|AC026402.3| Homo sapiens chromosome 4 clone CTB-51E13, comple... 40 9.0
45gb|AC019292.10| Homo sapiens, clone RP11-23J14, complete sequence 40 9.0
46gb|AF307278.1|AF307278 HIV-1 isolate 91ALI311640 from Spain, env... 40 9.0
47gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 9.0
48gb|AE008458.1|AE008458 Streptococcus pneumoniae R6 section 74 of... 40 9.0
49gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 40 9.0
50gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosom... 40 9.0
51gb|AC154432.2| Mus musculus BAC clone RP24-182L14 from chromosom... 40 9.0
52dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
53dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
54gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complet... 40 9.0
55dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.0
56gb|AF278687.1|AF278687 Streptococcus pneumoniae choline binding ... 40 9.0
57gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.0
58gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 9.0
59gb|AC109459.3| Homo sapiens chromosome 5 clone RP11-260E4, compl... 40 9.0
60dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 9.0
61dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
62emb|AL669945.16| Mouse DNA sequence from clone RP23-260K2 on chr... 40 9.0
63dbj|AK070380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
64dbj|AK066322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
65gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Can... 40 9.0
66gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
67gb|U48870.1|BSU48870 Bacillus subtilis signal peptidase II (lsp)... 40 9.0
68dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 9.0 
>dbj|AK072887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148F05, full
            insert sequence
          Length = 1998

 Score =  694 bits (350), Expect = 0.0
 Identities = 583/658 (88%), Gaps = 5/658 (0%)
 Strand = Plus / Plus

                                                                        
Query: 5    ctggncattgtttacgaggnatgagcaccttctcgttgtgaacaaaccggctcatatggt 64
            |||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||
Sbjct: 439  ctggacattgtttatgagg-atgaccatcttctcgttgtgaacaaaccggctcatatggt 497

                                                                        
Query: 65   tgttcacccagcaccagggnaatgcaaatggcaccttagtcaatgctatacttcaccact 124
            ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 498  tgttcacccagcaccagg-aaatgcaaatggcaccttagtcaatgctatacttcaccact 556

                                                                        
Query: 125  gcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgccctg 184
            ||||||||||||| |||||||||||| |||| || ||||||||||||||    |||||||
Sbjct: 557  gcaagatttcaacatttacctgtttagcacgtaattcaattgatgatgaa---tgccctg 613

                                                                        
Query: 185  aatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaagtaa 244
            | ||||||||||||||| | || || |||||  | || |||||||||| ||| |||||||
Sbjct: 614  attcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaagtaa 673

                                                                        
Query: 245  gttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataagggga 304
            ||||||| ||||| |||||| |||| || |||||||| |||||||||||||||||||| |
Sbjct: 674  gttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataagggta 733

                                                                        
Query: 305  caagtggacttcttgttgtagctaaggatgagcattcacatgctcaattagcagaacaat 364
            |||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 734  caagtggactacttgttgtagccaaggatgagcattctcatgcacaattagcagaacaat 793

                                                                        
Query: 365  tcaagctgcatacaataaatagggtatacatcagtcttacttgtggtgtacctagcccaa 424
            |||||||||||||||||   || || |||||||||||||||||||||| ||| |  || |
Sbjct: 794  tcaagctgcatacaatacgcagagtgtacatcagtcttacttgtggtgcaccgaatccga 853

                                                                        
Query: 425  attctgccagaattgaagttcccatatctcgtgatcctaacaaccggatacgcatggttg 484
            |||||| ||| ||||||||||| ||| |||||||||||||||||||||| || ||| |||
Sbjct: 854  attctggcaggattgaagttcctatagctcgtgatcctaacaaccggatccgtatgattg 913

                                                                        
Query: 485  ctgctcctggatcaggccacagatatgcaaagcatgctgctagtaggtataaagtaagag 544
            |  |||||||||||||||| |||||||||   ||||| ||||||||||||||||||||||
Sbjct: 914  ccactcctggatcaggccatagatatgcacgacatgccgctagtaggtataaagtaagag 973

                                                                        
Query: 545  aggtcttctgtggtggtggatctgcactggtagagtggagattggagacagggcgcactc 604
            |||||||   |||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct: 974  aggtctttgctggtggtggatcagcactagtagagtggagattggagacaggacgaactc 1033

                                                                      
Query: 605  accagatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaaacata 662
            ||||||| |||||||||||||| || |||||||  ||||| ||||| |||||||||||
Sbjct: 1034 accagattcgagcacatgcaaagtacctagggattccccttcttggggatgaaacata 1091
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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
             sequence
          Length = 143507

 Score =  287 bits (145), Expect = 2e-74
 Identities = 240/270 (88%), Gaps = 4/270 (1%)
 Strand = Plus / Minus

                                                                         
Query: 62    ggttgttcacccagcaccagggnaatgcaaatggcaccttagtcaatgctatacttcacc 121
             |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 48111 ggttgttcacccagcaccagg-aaatgcaaatggcaccttagtcaatgctatacttcacc 48053

                                                                         
Query: 122   actgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgcc 181
             |||||||||||||||| |||||||||||| |||| || ||||||||||||||    ||||
Sbjct: 48052 actgcaagatttcaacatttacctgtttagcacgtaattcaattgatgatgaa---tgcc 47996

                                                                         
Query: 182   ctgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaag 241
             |||| ||||||||||||||| | || || |||||  | || |||||||||| ||| ||||
Sbjct: 47995 ctgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaag 47936

                                                                         
Query: 242   taagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataagg 301
             |||||||||| ||||| |||||| |||| || |||||||| |||||||||||||||||||
Sbjct: 47935 taagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataagg 47876

                                           
Query: 302   ggacaagtggacttcttgttgtagctaagg 331
             | ||||||||||| ||||||||||| ||||
Sbjct: 47875 gtacaagtggactacttgttgtagccaagg 47846



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                         
Query: 329   aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 388
             ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 47689 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 47630

                                                                         
Query: 389   tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 448
             | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 47629 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 47570

                                                                         
Query: 449   tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 508
             || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 47569 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 47510

                                     
Query: 509   atgcaaagcatgctgctagtaggt 532
             |||||   ||||| ||||||||||
Sbjct: 47509 atgcacgacatgccgctagtaggt 47486



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                         
Query: 529   aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 588
             |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 46928 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 46869

                                  
Query: 589   gagacagggcgcactcaccag 609
             |||||||| || |||||||||
Sbjct: 46868 gagacaggacgaactcaccag 46848



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                         
Query: 5     ctggncattgtttacgaggnatgagcaccttctcgttgtgaacaaaccggctcatatggt 64
             |||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||
Sbjct: 48851 ctggacattgtttatgagg-atgaccatcttctcgttgtgaacaaaccggctcatatggt 48793



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 608   agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaaacata 662
             |||| |||||||||||||| || |||||||  ||||| ||||| |||||||||||
Sbjct: 46568 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaaacata 46514
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  287 bits (145), Expect = 2e-74
 Identities = 240/270 (88%), Gaps = 4/270 (1%)
 Strand = Plus / Minus

                                                                            
Query: 62       ggttgttcacccagcaccagggnaatgcaaatggcaccttagtcaatgctatacttcacc 121
                |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 29967414 ggttgttcacccagcaccagg-aaatgcaaatggcaccttagtcaatgctatacttcacc 29967356

                                                                            
Query: 122      actgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgcc 181
                |||||||||||||||| |||||||||||| |||| || ||||||||||||||    ||||
Sbjct: 29967355 actgcaagatttcaacatttacctgtttagcacgtaattcaattgatgatgaa---tgcc 29967299

                                                                            
Query: 182      ctgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaag 241
                |||| ||||||||||||||| | || || |||||  | || |||||||||| ||| ||||
Sbjct: 29967298 ctgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaag 29967239

                                                                            
Query: 242      taagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataagg 301
                |||||||||| ||||| |||||| |||| || |||||||| |||||||||||||||||||
Sbjct: 29967238 taagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataagg 29967179

                                              
Query: 302      ggacaagtggacttcttgttgtagctaagg 331
                | ||||||||||| ||||||||||| ||||
Sbjct: 29967178 gtacaagtggactacttgttgtagccaagg 29967149



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                            
Query: 329      aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 388
                ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 29966992 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 29966933

                                                                            
Query: 389      tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 448
                | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 29966932 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 29966873

                                                                            
Query: 449      tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 508
                || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 29966872 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 29966813

                                        
Query: 509      atgcaaagcatgctgctagtaggt 532
                |||||   ||||| ||||||||||
Sbjct: 29966812 atgcacgacatgccgctagtaggt 29966789



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                            
Query: 529      aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 588
                |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 29966231 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 29966172

                                     
Query: 589      gagacagggcgcactcaccag 609
                |||||||| || |||||||||
Sbjct: 29966171 gagacaggacgaactcaccag 29966151



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                            
Query: 5        ctggncattgtttacgaggnatgagcaccttctcgttgtgaacaaaccggctcatatggt 64
                |||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||
Sbjct: 29968154 ctggacattgtttatgagg-atgaccatcttctcgttgtgaacaaaccggctcatatggt 29968096



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 608      agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaaacata 662
                |||| |||||||||||||| || |||||||  ||||| ||||| |||||||||||
Sbjct: 29965871 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaaacata 29965817
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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541C02
          Length = 150660

 Score =  287 bits (145), Expect = 2e-74
 Identities = 240/270 (88%), Gaps = 4/270 (1%)
 Strand = Plus / Minus

                                                                         
Query: 62    ggttgttcacccagcaccagggnaatgcaaatggcaccttagtcaatgctatacttcacc 121
             |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 43562 ggttgttcacccagcaccagg-aaatgcaaatggcaccttagtcaatgctatacttcacc 43504

                                                                         
Query: 122   actgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgcc 181
             |||||||||||||||| |||||||||||| |||| || ||||||||||||||    ||||
Sbjct: 43503 actgcaagatttcaacatttacctgtttagcacgtaattcaattgatgatgaa---tgcc 43447

                                                                         
Query: 182   ctgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaag 241
             |||| ||||||||||||||| | || || |||||  | || |||||||||| ||| ||||
Sbjct: 43446 ctgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaag 43387

                                                                         
Query: 242   taagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataagg 301
             |||||||||| ||||| |||||| |||| || |||||||| |||||||||||||||||||
Sbjct: 43386 taagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataagg 43327

                                           
Query: 302   ggacaagtggacttcttgttgtagctaagg 331
             | ||||||||||| ||||||||||| ||||
Sbjct: 43326 gtacaagtggactacttgttgtagccaagg 43297



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                         
Query: 329   aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 388
             ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 43140 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 43081

                                                                         
Query: 389   tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 448
             | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 43080 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 43021

                                                                         
Query: 449   tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 508
             || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 43020 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 42961

                                     
Query: 509   atgcaaagcatgctgctagtaggt 532
             |||||   ||||| ||||||||||
Sbjct: 42960 atgcacgacatgccgctagtaggt 42937



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                         
Query: 529   aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 588
             |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 42379 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 42320

                                  
Query: 589   gagacagggcgcactcaccag 609
             |||||||| || |||||||||
Sbjct: 42319 gagacaggacgaactcaccag 42299



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                         
Query: 5     ctggncattgtttacgaggnatgagcaccttctcgttgtgaacaaaccggctcatatggt 64
             |||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||
Sbjct: 44302 ctggacattgtttatgagg-atgaccatcttctcgttgtgaacaaaccggctcatatggt 44244



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 608   agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaaacata 662
             |||| |||||||||||||| || |||||||  ||||| ||||| |||||||||||
Sbjct: 42019 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaaacata 41965
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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score =  287 bits (145), Expect = 2e-74
 Identities = 240/270 (88%), Gaps = 4/270 (1%)
 Strand = Plus / Minus

                                                                          
Query: 62     ggttgttcacccagcaccagggnaatgcaaatggcaccttagtcaatgctatacttcacc 121
              |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 162927 ggttgttcacccagcaccagg-aaatgcaaatggcaccttagtcaatgctatacttcacc 162869

                                                                          
Query: 122    actgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgcc 181
              |||||||||||||||| |||||||||||| |||| || ||||||||||||||    ||||
Sbjct: 162868 actgcaagatttcaacatttacctgtttagcacgtaattcaattgatgatgaa---tgcc 162812

                                                                          
Query: 182    ctgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaag 241
              |||| ||||||||||||||| | || || |||||  | || |||||||||| ||| ||||
Sbjct: 162811 ctgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaag 162752

                                                                          
Query: 242    taagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataagg 301
              |||||||||| ||||| |||||| |||| || |||||||| |||||||||||||||||||
Sbjct: 162751 taagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataagg 162692

                                            
Query: 302    ggacaagtggacttcttgttgtagctaagg 331
              | ||||||||||| ||||||||||| ||||
Sbjct: 162691 gtacaagtggactacttgttgtagccaagg 162662



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                          
Query: 329    aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 388
              ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 162505 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 162446

                                                                          
Query: 389    tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 448
              | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 162445 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 162386

                                                                          
Query: 449    tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 508
              || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 162385 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 162326

                                      
Query: 509    atgcaaagcatgctgctagtaggt 532
              |||||   ||||| ||||||||||
Sbjct: 162325 atgcacgacatgccgctagtaggt 162302



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                          
Query: 529    aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 588
              |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 161744 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 161685

                                   
Query: 589    gagacagggcgcactcaccag 609
              |||||||| || |||||||||
Sbjct: 161684 gagacaggacgaactcaccag 161664



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                          
Query: 5      ctggncattgtttacgaggnatgagcaccttctcgttgtgaacaaaccggctcatatggt 64
              |||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||
Sbjct: 163667 ctggacattgtttatgagg-atgaccatcttctcgttgtgaacaaaccggctcatatggt 163609



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 608    agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaaacata 662
              |||| |||||||||||||| || |||||||  ||||| ||||| |||||||||||
Sbjct: 161384 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaaacata 161330
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>ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.1 mRNA, complete cds
          Length = 2223

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 274 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 333
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 679 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 738

                                                          
Query: 334 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 380
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 739 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 785
to top
>ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.2 mRNA, complete cds
          Length = 2239

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 274 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 333
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 714 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 773

                                                          
Query: 334 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 380
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 774 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 820



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 91/114 (79%)
 Strand = Plus / Plus

                                                                        
Query: 517  catgctgctagtaggtataaagtaagagaggtcttctgtggtggtggatctgcactggta 576
            |||||||||||||||||||| ||||  ||    |||  ||| ||||| |||||| |||| 
Sbjct: 960  catgctgctagtaggtataaggtaatcgaaacattcgctggaggtggctctgcattggtt 1019

                                                                  
Query: 577  gagtggagattggagacagggcgcactcaccagatccgagcacatgcaaaatat 630
            ||||||||| |||| || || || ||||| ||||| || || ||||| ||||||
Sbjct: 1020 gagtggagactggaaaccggccgtactcatcagatacgtgctcatgctaaatat 1073
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>emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH41ZA09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1616

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 274 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 333
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 713 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 772

                                                          
Query: 334 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 380
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 773 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 819



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 517 catgctgctagtaggtataaagtaa 541
           |||||||||||||||||||| ||||
Sbjct: 959 catgctgctagtaggtataaggtaa 983
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>dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative RNA
           pseudouridylate synthase, complete cds, clone:
           RAFL17-47-D22
          Length = 1546

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 274 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 333
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 671 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 730

                                                          
Query: 334 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 380
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 731 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 777
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>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 329   aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaat 380
             ||||||| ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 90777 aggatgaacattctcatgcccatttagcagaacagttcaagctacacacaat 90828
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 584     gattggagacagggcgcactcaccagatccg 614
               |||||||||| |||||||| |||||||||||
Sbjct: 1719808 gattggagaccgggcgcacccaccagatccg 1719838
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>gb|AC150788.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073C10,
              complete sequence
          Length = 165350

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    gcaactcaattgatgatgatg 175
              |||||||||||||||||||||
Sbjct: 129915 gcaactcaattgatgatgatg 129935
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>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0086E02, complete sequence
          Length = 150474

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 155  gcaactcaattgatgatgatg 175
            |||||||||||||||||||||
Sbjct: 9893 gcaactcaattgatgatgatg 9913
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>gb|AC147480.13| Mus musculus chromosome 14, clone RP23-429N24, complete sequence
          Length = 210000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 92     atggcaccttagtcaatgctatacttcac 120
              ||||||||||||||||||| | |||||||
Sbjct: 117782 atggcaccttagtcaatgccaaacttcac 117810
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>gb|AC026478.5| Mus musculus strain C57BL6/J chromosome 5 clone RP23-135F23, complete
              sequence
          Length = 188103

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 92     atggcaccttagtcaatgctatacttcac 120
              ||||||||||||||||||| | |||||||
Sbjct: 133582 atggcaccttagtcaatgccaaacttcac 133554
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>gb|AC165092.3| Mus musculus BAC clone RP23-10M2 from chromosome 14, complete sequence
          Length = 215949

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 92     atggcaccttagtcaatgctatacttcac 120
              ||||||||||||||||||| | |||||||
Sbjct: 131212 atggcaccttagtcaatgccaaacttcac 131240
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>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains three
              novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide 18 (Myc-regulated) (DDX18) pseudogene, complete
              sequence
          Length = 158357

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 572    tggtagagtggagattggaga 592
              |||||||||||||||||||||
Sbjct: 117293 tggtagagtggagattggaga 117313
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>gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, complete sequence
          Length = 153198

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 417    tagcccaaattctgccagaat 437
              |||||||||||||||||||||
Sbjct: 124179 tagcccaaattctgccagaat 124199
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>ref|NM_173450.1| Mus musculus RNA pseudouridylate synthase domain containing 2
            (Rpusd2), mRNA
          Length = 2702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 592  acagggcgcactcaccagatccgag 616
            ||||| |||||||||||||||||||
Sbjct: 1170 acaggtcgcactcaccagatccgag 1194
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>dbj|AK043340.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730086P06 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 1862

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 592  acagggcgcactcaccagatccgag 616
            ||||| |||||||||||||||||||
Sbjct: 1137 acaggtcgcactcaccagatccgag 1161
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>dbj|AK035800.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630005H21 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 2634

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 592  acagggcgcactcaccagatccgag 616
            ||||| |||||||||||||||||||
Sbjct: 1108 acaggtcgcactcaccagatccgag 1132
to top
>dbj|AK035752.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630001E10 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 2272

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 592  acagggcgcactcaccagatccgag 616
            ||||| |||||||||||||||||||
Sbjct: 1108 acaggtcgcactcaccagatccgag 1132
to top
>dbj|AK044767.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930041C02 product:hypothetical Pseudouridine
            synthase containing protein, full insert sequence
          Length = 2702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 592  acagggcgcactcaccagatccgag 616
            ||||| |||||||||||||||||||
Sbjct: 1170 acaggtcgcactcaccagatccgag 1194
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 155     gcaactcaattgatgatgatg 175
               |||||||||||||||||||||
Sbjct: 3932028 gcaactcaattgatgatgatg 3932048
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>ref|XM_230464.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921503C21;
            CG6187-like (predicted) (LOC311326), mRNA
          Length = 1781

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 592  acagggcgcactcaccagatccgag 616
            ||||| |||||||||||||||||||
Sbjct: 1180 acaggtcgcactcaccagatccgag 1204
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>emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chromosome 2, complete
              sequence
          Length = 189540

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 592    acagggcgcactcaccagatccgag 616
              ||||| |||||||||||||||||||
Sbjct: 173959 acaggtcgcactcaccagatccgag 173935
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>ref|XM_635322.1| Dictyostelium discoideum hypothetical protein (DDB0218348), partial
           mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 tgaatcttcagatgatgatg 202
           ||||||||||||||||||||
Sbjct: 381 tgaatcttcagatgatgatg 362
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>ref|NM_186145.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 357

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 478 atggttgctgctcctggatcaggc 501
           |||||||||||| |||||||||||
Sbjct: 269 atggttgctgctgctggatcaggc 246
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>ref|XM_422070.1| PREDICTED: Gallus gallus ribosomal protein L37a (LOC396031), mRNA
          Length = 3338

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 643 ctgcttggtgatgaaacata 662
           ||||||||||||||||||||
Sbjct: 590 ctgcttggtgatgaaacata 571
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>gb|AC132584.5| Mus musculus BAC clone RP24-346B15 from chromosome 7, complete sequence
          Length = 227856

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   aattctgccagaattgaagt 443
             ||||||||||||||||||||
Sbjct: 97016 aattctgccagaattgaagt 97035
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>gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosome 7, complete sequence
          Length = 217760

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   aattctgccagaattgaagt 443
             ||||||||||||||||||||
Sbjct: 45275 aattctgccagaattgaagt 45294
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>gb|AC141108.3| Medicago truncatula clone mth2-22g6, complete sequence
          Length = 119745

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tgaatcttcagatgatgatg 202
             ||||||||||||||||||||
Sbjct: 29892 tgaatcttcagatgatgatg 29911
to top
>emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chromosome 9 Contains the
             3' end of a novel gene (SHC3) and a novel gene, complete
             sequence
          Length = 113051

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   agattggagacagggcgcac 602
             ||||||||||||||||||||
Sbjct: 36101 agattggagacagggcgcac 36082
to top
>ref|XM_794193.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4329-PA,
            isoform A (LOC594764), partial mRNA
          Length = 2643

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 488  ctcctggatcaggccacaga 507
            ||||||||||||||||||||
Sbjct: 2458 ctcctggatcaggccacaga 2477
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>emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section 9 of 21): from 1602883 to
             1807145
          Length = 204263

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    atggttgttcacccagcacc 79
             ||||||||||||||||||||
Sbjct: 13924 atggttgttcacccagcacc 13943
to top
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 130     atttcaacttttacctgttt 149
               ||||||||||||||||||||
Sbjct: 2646144 atttcaacttttacctgttt 2646163
to top
>emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7H11orf14 gene, D7H11orf15 gene,
              D7H11orf16 gene and C11orf17 gene
          Length = 234169

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    aattctgccagaattgaagt 443
              ||||||||||||||||||||
Sbjct: 164362 aattctgccagaattgaagt 164343
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>emb|AJ293572.1|SPN293572 Streptococcus pneumoniae pce gene for teichoic acid
           phosphorylcholine esterase
          Length = 2355

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 587 tggagacagggcgcactcaccagatccg 614
           ||||||||||||||||||| || |||||
Sbjct: 21  tggagacagggcgcactcatcaaatccg 48
to top
>emb|AJ272039.1|SPN272039 Streptococcus pneumoniae lytD gene for teichoic acid
           phosphorylcholine esterase
          Length = 2486

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 587 tggagacagggcgcactcaccagatccg 614
           ||||||||||||||||||| || |||||
Sbjct: 69  tggagacagggcgcactcatcaaatccg 96
to top
>ref|NM_001025209.1| Strongylocentrotus purpuratus soluble adenylyl cyclase (LOC574069),
            mRNA
          Length = 5938

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  tgaatcttcagatgatgatg 202
            ||||||||||||||||||||
Sbjct: 3942 tgaatcttcagatgatgatg 3961
to top
>gb|AY926532.1| Strongylocentrotus purpuratus soluble adenylyl cyclase mRNA, complete
            cds
          Length = 5938

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  tgaatcttcagatgatgatg 202
            ||||||||||||||||||||
Sbjct: 3942 tgaatcttcagatgatgatg 3961
to top
>gb|AF126483.2| Homo sapiens chromosome 8 clone GS1-148g17 map 8p22-p21, complete
             sequence
          Length = 73160

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aagatttcaacttttacctg 146
             ||||||||||||||||||||
Sbjct: 25221 aagatttcaacttttacctg 25240
to top
>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence
          Length = 200581

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ataggcttgataaggggaca 306
             ||||||||||||||||||||
Sbjct: 58247 ataggcttgataaggggaca 58228
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>gb|AC026402.3| Homo sapiens chromosome 4 clone CTB-51E13, complete sequence
          Length = 176959

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   caggccacagatatgcaaag 516
             ||||||||||||||||||||
Sbjct: 63224 caggccacagatatgcaaag 63205
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>gb|AC019292.10| Homo sapiens, clone RP11-23J14, complete sequence
          Length = 187375

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aagatttcaacttttacctg 146
              ||||||||||||||||||||
Sbjct: 114334 aagatttcaacttttacctg 114315
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>gb|AF307278.1|AF307278 HIV-1 isolate 91ALI311640 from Spain, envelope glycoprotein, V3
           region (env) gene, partial cds
          Length = 264

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 aattagcagaacaattcaag 369
           ||||||||||||||||||||
Sbjct: 233 aattagcagaacaattcaag 252
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     tatttgatgttgaccaattt 228
               ||||||||||||||||||||
Sbjct: 3391479 tatttgatgttgaccaattt 3391498



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     tatttgatgttgaccaattt 228
               ||||||||||||||||||||
Sbjct: 3049892 tatttgatgttgaccaattt 3049911



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     tatttgatgttgaccaattt 228
               ||||||||||||||||||||
Sbjct: 2985146 tatttgatgttgaccaattt 2985165
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>gb|AE008458.1|AE008458 Streptococcus pneumoniae R6 section 74 of 184 of the complete genome
          Length = 12017

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 587  tggagacagggcgcactcaccagatccg 614
            ||||||||||||||||||| || |||||
Sbjct: 9839 tggagacagggcgcactcatcaaatccg 9866
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>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 487    gctcctggatcaggccacag 506
              ||||||||||||||||||||
Sbjct: 140901 gctcctggatcaggccacag 140920
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>gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosome 13, complete sequence
          Length = 185090

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    cacagatatgcaaagcatgc 521
              ||||||||||||||||||||
Sbjct: 103362 cacagatatgcaaagcatgc 103343
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>gb|AC154432.2| Mus musculus BAC clone RP24-182L14 from chromosome 13, complete
             sequence
          Length = 161618

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   cacagatatgcaaagcatgc 521
             ||||||||||||||||||||
Sbjct: 38161 cacagatatgcaaagcatgc 38142
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 487     gctcctggatcaggccacag 506
               ||||||||||||||||||||
Sbjct: 9507417 gctcctggatcaggccacag 9507436
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 478    atggttgctgctcctggatcaggc 501
              |||||||||||| |||||||||||
Sbjct: 414072 atggttgctgctgctggatcaggc 414049
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>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence
          Length = 157417

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   atttcaacttttacctgtttaaca 153
             |||||||||||||| |||||||||
Sbjct: 34963 atttcaacttttacgtgtttaaca 34940
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 587     tggagacagggcgcactcaccagatccg 614
               ||||||| |||||||| |||||||||||
Sbjct: 7377777 tggagaccgggcgcacccaccagatccg 7377804
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>gb|AF278687.1|AF278687 Streptococcus pneumoniae choline binding protein E (cbpE) gene,
           complete cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 587 tggagacagggcgcactcaccagatccg 614
           ||||||||||||||||||| || |||||
Sbjct: 124 tggagacagggcgcactcatcaaatccg 151
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 587     tggagacagggcgcactcaccagatccg 614
               ||||||| |||||||| |||||||||||
Sbjct: 3887248 tggagaccgggcgcacccaccagatccg 3887221
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 587    tggagacagggcgcactcaccagatccg 614
              ||||||||||||||||||| || |||||
Sbjct: 881962 tggagacagggcgcactcatcaaatccg 881989
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>gb|AC109459.3| Homo sapiens chromosome 5 clone RP11-260E4, complete sequence
          Length = 137309

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    ataggcttgataaggggaca 306
              ||||||||||||||||||||
Sbjct: 120718 ataggcttgataaggggaca 120699
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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    attgtgcataggcttgataa 299
              ||||||||||||||||||||
Sbjct: 157341 attgtgcataggcttgataa 157322
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 478   atggttgctgctcctggatcaggc 501
             |||||||||||| |||||||||||
Sbjct: 16236 atggttgctgctgctggatcaggc 16213
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>emb|AL669945.16| Mouse DNA sequence from clone RP23-260K2 on chromosome X, complete
              sequence
          Length = 210523

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     tgcaaatggcaccttagtca 106
              ||||||||||||||||||||
Sbjct: 103342 tgcaaatggcaccttagtca 103361
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>dbj|AK070380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052O04, full
           insert sequence
          Length = 815

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 gctcctggatcaggccacag 506
           ||||||||||||||||||||
Sbjct: 169 gctcctggatcaggccacag 188
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>dbj|AK066322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062A07, full
           insert sequence
          Length = 744

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 gctcctggatcaggccacag 506
           ||||||||||||||||||||
Sbjct: 136 gctcctggatcaggccacag 155
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>gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204618

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    gggacaagtggacttcttgt 320
              ||||||||||||||||||||
Sbjct: 142989 gggacaagtggacttcttgt 143008
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 487     gctcctggatcaggccacag 506
               ||||||||||||||||||||
Sbjct: 9513456 gctcctggatcaggccacag 9513475
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>gb|U48870.1|BSU48870 Bacillus subtilis signal peptidase II (lsp) gene, complete cds,
            isoleucyl-tRNA synthetase (ileS) and pyrR genes, partial
            cds
          Length = 3271

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   atggttgttcacccagcacc 79
            ||||||||||||||||||||
Sbjct: 1949 atggttgttcacccagcacc 1968
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 587     tggagacagggcgcactcaccagatccg 614
               ||||||| |||||||| |||||||||||
Sbjct: 1381791 tggagacggggcgcacccaccagatccg 1381818


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,386,521
Number of Sequences: 3902068
Number of extensions: 5386521
Number of successful extensions: 96060
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95605
Number of HSP's gapped (non-prelim): 445
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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