ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags7a22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ890139.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn29b gene) Length = 785 Score = 605 bits (305), Expect = e-170 Identities = 379/404 (93%) Strand = Plus / Plus Query: 68 catggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgca 127 |||||||||| | || |||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 88 catggcgcagttaatggacaaggccaaggggttcgtggcggagaagatatcgggggtgca 147 Query: 128 gaagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccac 187 ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 148 gaaaccggaggcggacctgtcggacctgtcggtgcagcacgtcggccgcgacggcgccac 207 Query: 188 cctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagat 247 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 208 cctgtccggccgcctcgacgtgcgcaacccctactcgcacaccatccccatctgcgagat 267 Query: 248 cagctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccggg 307 |||||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 268 cagctactccttcaaaagcgccggccgcgacgtggcctccgggaccatgccggacccggg 327 Query: 308 gtcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgactt 367 ||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||| Sbjct: 328 gtcgctggtggccagcgacaccaccggcctcgacataccggtgaaggtgccgtacgactt 387 Query: 368 ccttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgt 427 ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 388 cctgatgagcctggtgaaggacgccggcaaggactgggacctcgactacgagatgcgcgt 447 Query: 428 aggcctcaccatcgacctncccatcgtcggcaacttcacgctgc 471 ||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 448 cggcctcaccgtcgacctccccatcgtcggcaacttcacgctgc 491
>ref|NM_188551.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 456 Score = 238 bits (120), Expect = 1e-59 Identities = 332/403 (82%) Strand = Plus / Plus Query: 69 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 128 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 1 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 60 Query: 129 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 188 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 61 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 120 Query: 189 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 248 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 121 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 180 Query: 249 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 308 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 181 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 240 Query: 309 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 368 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 241 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 300 Query: 369 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 428 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 301 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 360 Query: 429 ggcctcaccatcgacctncccatcgtcggcaacttcacgctgc 471 ||||||||| ||||||| |||||| ||||||||||||| |||| Sbjct: 361 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgc 403
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 238 bits (120), Expect = 1e-59 Identities = 332/403 (82%) Strand = Plus / Minus Query: 69 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 128 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 6921687 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 6921628 Query: 129 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 188 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 6921627 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 6921568 Query: 189 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 248 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 6921567 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 6921508 Query: 249 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 308 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 6921507 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 6921448 Query: 309 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 368 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 6921447 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 6921388 Query: 369 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 428 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 6921387 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 6921328 Query: 429 ggcctcaccatcgacctncccatcgtcggcaacttcacgctgc 471 ||||||||| ||||||| |||||| ||||||||||||| |||| Sbjct: 6921327 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgc 6921285 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 212 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 267 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 24929240 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 24929295 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 84 gacaaggccaaggggttcgtggcggaga 111 |||| ||||||||||||||||||||||| Sbjct: 24929112 gacagggccaaggggttcgtggcggaga 24929139 Score = 46.1 bits (23), Expect = 0.10 Identities = 31/34 (91%) Strand = Plus / Plus Query: 433 tcaccatcgacctncccatcgtcggcaacttcac 466 ||||||||||||| ||| ||||||||| |||||| Sbjct: 24929585 tcaccatcgacctccccgtcgtcggcagcttcac 24929618
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 238 bits (120), Expect = 1e-59 Identities = 332/403 (82%) Strand = Plus / Minus Query: 69 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 128 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 89411 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 89352 Query: 129 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 188 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 89351 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 89292 Query: 189 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 248 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 89291 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 89232 Query: 249 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 308 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 89231 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 89172 Query: 309 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 368 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 89171 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 89112 Query: 369 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 428 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 89111 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 89052 Query: 429 ggcctcaccatcgacctncccatcgtcggcaacttcacgctgc 471 ||||||||| ||||||| |||||| ||||||||||||| |||| Sbjct: 89051 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgc 89009
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 238 bits (120), Expect = 1e-59 Identities = 332/403 (82%) Strand = Plus / Minus Query: 69 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 128 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 43505 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 43446 Query: 129 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 188 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 43445 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 43386 Query: 189 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 248 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 43385 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 43326 Query: 249 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 308 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 43325 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 43266 Query: 309 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 368 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 43265 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 43206 Query: 369 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 428 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 43205 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 43146 Query: 429 ggcctcaccatcgacctncccatcgtcggcaacttcacgctgc 471 ||||||||| ||||||| |||||| ||||||||||||| |||| Sbjct: 43145 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgc 43103
>dbj|AK063645.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H06, full insert sequence Length = 745 Score = 188 bits (95), Expect = 1e-44 Identities = 247/298 (82%) Strand = Plus / Plus Query: 174 cgcgacggcgccaccctgtccggccgcctcgacgtgcgcaacccctactcacacaccatc 233 |||| |||||||||||| | || ||| | |||||||||||||||||||| ||| ||||| Sbjct: 303 cgcggcggcgccaccctcgcggggcgcgtggacgtgcgcaacccctactcccactccatc 362 Query: 234 cccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccgggacg 293 || ||||||||| | |||||||| || ||||||||||| | || || || || |||||| Sbjct: 363 ccgatctgcgaggtgagctactcgctgaagagcgccgggagggaggtggcgtcggggacg 422 Query: 294 atgccggacccggggtcgctggtggccagcgacaccaccagcctccacatacccgtgaag 353 ||||| |||||||||||||| ||| |||||||||| | || |||| || |||||| Sbjct: 423 atgcccgacccggggtcgctcaccgccggcgacaccacgcggctggacatcccggtgaag 482 Query: 354 gtgccctacgacttccttgtgagcctgatgaaggacgccgggaaggactgggacctcgac 413 ||||| ||||||||||| |||||||| | ||||||||| | |||||||||| ||||| Sbjct: 483 gtgccgtacgacttcctggtgagcctcgccagggacgccggcagggactgggacatcgac 542 Query: 414 tacgagatgcgcgtaggcctcaccatcgacctncccatcgtcggcaacttcacgctgc 471 ||||||||| | || ||||||||| ||||||| |||||| ||||||||||||| |||| Sbjct: 543 tacgagatgagggtcggcctcaccgtcgacctccccatcctcggcaacttcaccctgc 600
>ref|XM_475961.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 456 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 398 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcgg 457 |||||||||| |||||||| || | ||| ||||||||||||||||| ||||||||||| Sbjct: 330 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 389 Query: 458 caacttcac 466 ||||||||| Sbjct: 390 caacttcac 398 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 232 tccccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccggga 291 |||||||||||||| ||| |||| |||||||| |||||||| || || || ||||| | Sbjct: 164 tccccatctgcgagctcacctacaccctcaagtgcgccggcaacgttgtggcgtccggca 223 Query: 292 cgatgccggacccggggt 309 ||||||| || ||||||| Sbjct: 224 cgatgcccgatccggggt 241 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 79 tgatcgacaaggccaaggggttcgtggcggaga 111 |||| |||||||| || |||||||||||||||| Sbjct: 11 tgatggacaaggcgaaagggttcgtggcggaga 43
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 398 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcgg 457 |||||||||| |||||||| || | ||| ||||||||||||||||| ||||||||||| Sbjct: 3606 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 3547 Query: 458 caacttcac 466 ||||||||| Sbjct: 3546 caacttcac 3538 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 232 tccccatctgcgagatcagctactccctcaagagcgccggc 272 |||||||||||||| ||| |||| |||||||| |||||||| Sbjct: 3884 tccccatctgcgagctcacctacaccctcaagtgcgccggc 3844 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 79 tgatcgacaaggccaaggggttcgtggcggaga 111 |||| |||||||| || |||||||||||||||| Sbjct: 4037 tgatggacaaggcgaaagggttcgtggcggaga 4005
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 398 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcgg 457 |||||||||| |||||||| || | ||| ||||||||||||||||| ||||||||||| Sbjct: 28849313 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 28849254 Query: 458 caacttcac 466 ||||||||| Sbjct: 28849253 caacttcac 28849245 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 232 tccccatctgcgagatcagctactccctcaagagcgccggc 272 |||||||||||||| ||| |||| |||||||| |||||||| Sbjct: 28849591 tccccatctgcgagctcacctacaccctcaagtgcgccggc 28849551 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 79 tgatcgacaaggccaaggggttcgtggcggaga 111 |||| |||||||| || |||||||||||||||| Sbjct: 28849744 tgatggacaaggcgaaagggttcgtggcggaga 28849712
>dbj|AK066062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C18, full insert sequence Length = 947 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 398 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcgg 457 |||||||||| |||||||| || | ||| ||||||||||||||||| ||||||||||| Sbjct: 632 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 691 Query: 458 caacttcac 466 ||||||||| Sbjct: 692 caacttcac 700 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 232 tccccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccggga 291 |||||||||||||| ||| |||| |||||||| |||||||| || || || ||||| | Sbjct: 466 tccccatctgcgagctcacctacaccctcaagtgcgccggcaacgttgtggcgtccggca 525 Query: 292 cgatgccggacccggggt 309 ||||||| || ||||||| Sbjct: 526 cgatgcccgatccggggt 543 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 79 tgatcgacaaggccaaggggttcgtggcggaga 111 |||| |||||||| || |||||||||||||||| Sbjct: 313 tgatggacaaggcgaaagggttcgtggcggaga 345
>dbj|AK061818.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B08, full insert sequence Length = 1125 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 398 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcgg 457 |||||||||| |||||||| || | ||| ||||||||||||||||| ||||||||||| Sbjct: 810 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 869 Query: 458 caacttcac 466 ||||||||| Sbjct: 870 caacttcac 878 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 232 tccccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccggga 291 |||||||||||||| ||| |||| |||||||| |||||||| || || || ||||| | Sbjct: 644 tccccatctgcgagctcacctacaccctcaagtgcgccggcaacgttgtggcgtccggca 703 Query: 292 cgatgccggacccggggt 309 ||||||| || ||||||| Sbjct: 704 cgatgcccgatccggggt 721 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 79 tgatcgacaaggccaaggggttcgtggcggaga 111 |||| |||||||| || |||||||||||||||| Sbjct: 491 tgatggacaaggcgaaagggttcgtggcggaga 523
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035N21, complete sequence Length = 128331 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 398 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcgg 457 |||||||||| |||||||| || | ||| ||||||||||||||||| ||||||||||| Sbjct: 24155 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 24214 Query: 458 caacttcac 466 ||||||||| Sbjct: 24215 caacttcac 24223 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 232 tccccatctgcgagatcagctactccctcaagagcgccggc 272 |||||||||||||| ||| |||| |||||||| |||||||| Sbjct: 23877 tccccatctgcgagctcacctacaccctcaagtgcgccggc 23917 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 79 tgatcgacaaggccaaggggttcgtggcggaga 111 |||| |||||||| || |||||||||||||||| Sbjct: 23724 tgatggacaaggcgaaagggttcgtggcggaga 23756
>gb|AY105938.1| Zea mays PCO134925 mRNA sequence Length = 913 Score = 67.9 bits (34), Expect = 3e-08 Identities = 60/69 (86%) Strand = Plus / Plus Query: 398 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcgg 457 |||||||||| ||||||||||| | | || || |||||| ||||||| ||||||||||| Sbjct: 568 ggactgggacatcgactacgagctccaggtcgggctcaccgtcgacctccccatcgtcgg 627 Query: 458 caacttcac 466 ||||||||| Sbjct: 628 caacttcac 636 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 78 ctgatcgacaaggccaaggggttcgtggcggaga 111 ||||| |||||||| ||||||||||| ||||||| Sbjct: 248 ctgatggacaaggcgaaggggttcgtcgcggaga 281
>gb|AY104771.1| Zea mays PCO087563 mRNA sequence Length = 629 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 211 gcaacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcgccg 270 ||||||||||||| ||| |||||||||||||||||||| |||| | |||||||||||| Sbjct: 422 gcaacccctactctcaccgcatccccatctgcgagatcacctacacgttcaagagcgccg 481 Query: 271 gc 272 || Sbjct: 482 gc 483 Score = 42.1 bits (21), Expect = 1.6 Identities = 57/69 (82%) Strand = Plus / Plus Query: 348 gtgaaggtgccctacgacttccttgtgagcctgatgaaggacgccgggaaggactgggac 407 ||||||||||| ||||||||| | ||| ||||||||||| ||| | |||||||||| Sbjct: 559 gtgaaggtgccgtacgacttcatcgtgtcgctgatgaaggatctcggaagggactgggac 618 Query: 408 ctcgactac 416 |||||||| Sbjct: 619 atcgactac 627 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 84 gacaaggccaaggggttcgtggcggaga 111 |||||||||||||| ||||||| ||||| Sbjct: 295 gacaaggccaagggcttcgtggtggaga 322
>ref|NM_192875.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 212 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 267 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 228 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 283 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 84 gacaaggccaaggggttcgtggcggaga 111 |||| ||||||||||||||||||||||| Sbjct: 100 gacagggccaaggggttcgtggcggaga 127 Score = 46.1 bits (23), Expect = 0.10 Identities = 31/34 (91%) Strand = Plus / Plus Query: 433 tcaccatcgacctncccatcgtcggcaacttcac 466 ||||||||||||| ||| ||||||||| |||||| Sbjct: 449 tcaccatcgacctccccgtcgtcggcagcttcac 482
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0006C01 Length = 153865 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 212 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 267 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 1763 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 1818 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 84 gacaaggccaaggggttcgtggcggaga 111 |||| ||||||||||||||||||||||| Sbjct: 1635 gacagggccaaggggttcgtggcggaga 1662 Score = 46.1 bits (23), Expect = 0.10 Identities = 31/34 (91%) Strand = Plus / Plus Query: 433 tcaccatcgacctncccatcgtcggcaacttcac 466 ||||||||||||| ||| ||||||||| |||||| Sbjct: 2108 tcaccatcgacctccccgtcgtcggcagcttcac 2141
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0501G01 Length = 154561 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 212 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 267 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 152360 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 152415 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 84 gacaaggccaaggggttcgtggcggaga 111 |||| ||||||||||||||||||||||| Sbjct: 152232 gacagggccaaggggttcgtggcggaga 152259 Score = 46.1 bits (23), Expect = 0.10 Identities = 31/34 (91%) Strand = Plus / Plus Query: 433 tcaccatcgacctncccatcgtcggcaacttcac 466 ||||||||||||| ||| ||||||||| |||||| Sbjct: 152705 tcaccatcgacctccccgtcgtcggcagcttcac 152738
>gb|AY823547.1| Pennisetum glaucum late embryonic abundant-like protein mRNA, complete cds Length = 670 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/65 (86%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 402 tgggacctcgactacgagatgcgcgtaggcctcaccatcgacctncccatcgtcggcaac 461 |||||| ||||||||||| | | || || |||||||||||| | ||||||||||||||| Sbjct: 466 tgggacatcgactacgagctccaggtggggctcaccatcgac-tccccatcgtcggcaac 524 Query: 462 ttcac 466 ||||| Sbjct: 525 ttcac 529 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Plus Query: 232 tccccatctgcgagatcagctactccctcaagagcgccgg 271 |||||||||||||| ||| |||| |||||||| ||||||| Sbjct: 295 tccccatctgcgaggtcacctacaccctcaagtgcgccgg 334 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 78 ctgatcgacaaggccaaggggttcgtggcgga 109 ||||| ||||||||||||| |||||||||||| Sbjct: 141 ctgatggacaaggccaaggagttcgtggcgga 172 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 aaggtgccctacgacttcct 370 |||||||||||||||||||| Sbjct: 414 aaggtgccctacgacttcct 433
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cgccggccgcgaagtcgcctcc 287 |||||||||||||||||||||| Sbjct: 3114592 cgccggccgcgaagtcgcctcc 3114613
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 gcgcagctgatcgacaaggcc 92 ||||||||||||||||||||| Sbjct: 3159747 gcgcagctgatcgacaaggcc 3159727 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 cggacatgtcggtgcagcacgtcg 171 |||||||| ||||||||||||||| Sbjct: 1982132 cggacatggcggtgcagcacgtcg 1982109
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cgacggcgccaccctgtccggccgc 200 |||||||||||||||| |||||||| Sbjct: 4431096 cgacggcgccaccctggccggccgc 4431072
>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005A05 Length = 162520 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cgacggcgccaccctgtccggccgc 200 |||||||||||||||| |||||||| Sbjct: 25826 cgacggcgccaccctggccggccgc 25802
>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0470C02 Length = 158849 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cgacggcgccaccctgtccggccgc 200 |||||||||||||||| |||||||| Sbjct: 78777 cgacggcgccaccctggccggccgc 78753
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 ctccctcaagagcgccggcc 273 |||||||||||||||||||| Sbjct: 1798942 ctccctcaagagcgccggcc 1798961
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gctgatcgacaaggccaagg 96 |||||||||||||||||||| Sbjct: 1008063 gctgatcgacaaggccaagg 1008044
>gb|AY658486.1| Synthetic construct Peudomonas aeruginosa clone FLH052275.01F PA0028 gene, partial cds Length = 603 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 cgccaccctgtccggccgcctcga 205 ||||||||||| |||||||||||| Sbjct: 469 cgccaccctgttcggccgcctcga 446
>gb|AE009031.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 57 of 256 of the complete sequence Length = 11123 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 agcctgatgaaggacgccgg 394 |||||||||||||||||||| Sbjct: 10062 agcctgatgaaggacgccgg 10081
>ref|XM_838462.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1380) partial mRNA Length = 4464 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 ctccctcaagagcgccggcc 273 |||||||||||||||||||| Sbjct: 399 ctccctcaagagcgccggcc 418
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ggacctcgactacgagatgc 423 |||||||||||||||||||| Sbjct: 267257 ggacctcgactacgagatgc 267276
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 agcctgatgaaggacgccgg 394 |||||||||||||||||||| Sbjct: 62130 agcctgatgaaggacgccgg 62149
>emb|X64730.1|HSGVPGENE Halobacterium salinarium gvp genes involved in gas vesicle synthesis Length = 8630 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cggccgcctcgacgtgcgca 213 |||||||||||||||||||| Sbjct: 7865 cggccgcctcgacgtgcgca 7846
>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence Length = 294829 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ggtgcagcacgtcgggcgcg 177 |||||||||||||||||||| Sbjct: 271051 ggtgcagcacgtcgggcgcg 271032 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ggtgcagcacgtcgggcgcg 177 |||||||||||||||||||| Sbjct: 264132 ggtgcagcacgtcgggcgcg 264113
>emb|X94688.1|HSGVP H.salinarium gvp genes involved in gas vesicle synthesis Length = 8935 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cggccgcctcgacgtgcgca 213 |||||||||||||||||||| Sbjct: 8171 cggccgcctcgacgtgcgca 8152
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gctgatcgacaaggccaagg 96 |||||||||||||||||||| Sbjct: 1061463 gctgatcgacaaggccaagg 1061444
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 agcctgatgaaggacgccgg 394 |||||||||||||||||||| Sbjct: 623742 agcctgatgaaggacgccgg 623761
>gb|AF276230.1|AF276230 Pisum sativum cultivar Torsdag putative heme oxygenase 1 precursor (HO1) gene, complete cds; nuclear gene for chloroplast product Length = 2503 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 aggccaaggggttcgtggcggaga 111 |||||||||||||||||| ||||| Sbjct: 226 aggccaaggggttcgtggaggaga 249
>gb|AF276229.1|AF276229 Pisum sativum cultivar Solara putative heme oxygenase 1 precursor (HO1) gene, complete cds; nuclear gene for chloroplast product Length = 2503 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 aggccaaggggttcgtggcggaga 111 |||||||||||||||||| ||||| Sbjct: 226 aggccaaggggttcgtggaggaga 249
>gb|AF276228.1|AF276228 Pisum sativum cultivar Solara putative heme oxygenase 1 precursor (HO1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1469 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 aggccaaggggttcgtggcggaga 111 |||||||||||||||||| ||||| Sbjct: 526 aggccaaggggttcgtggaggaga 549
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gcacgtcgggcgcgacggcg 183 |||||||||||||||||||| Sbjct: 1886780 gcacgtcgggcgcgacggcg 1886761
>gb|AE004861.1| Pseudomonas aeruginosa PAO1, section 422 of 529 of the complete genome Length = 10466 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccaccctgtccggccgcc 201 |||||||||||||||||||| Sbjct: 3759 cgccaccctgtccggccgcc 3778
>gb|AE004442.1| Pseudomonas aeruginosa PAO1, section 3 of 529 of the complete genome Length = 10141 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 cgccaccctgtccggccgcctcga 205 ||||||||||| |||||||||||| Sbjct: 4754 cgccaccctgttcggccgcctcga 4731
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 tgtgagcctgatgaaggacgccgg 394 ||||| |||||||||||||||||| Sbjct: 3559107 tgtgaacctgatgaaggacgccgg 3559130
>gb|AE005157.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 18 of 32 of the complete genome Length = 13510 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cggccgcctcgacgtgcgca 213 |||||||||||||||||||| Sbjct: 2129 cggccgcctcgacgtgcgca 2110
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ggcgcagctgatcgacaagg 90 |||||||||||||||||||| Sbjct: 1063708 ggcgcagctgatcgacaagg 1063689
>gb|AC005152.1|AC005152 Homo sapiens chromosome 17, clone hRPC.1037_O_7, complete sequence Length = 126150 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 gacttccttgtgagcctgatgaag 386 |||||||||||||| ||||||||| Sbjct: 20072 gacttccttgtgagactgatgaag 20095 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,313,300 Number of Sequences: 3902068 Number of extensions: 2313300 Number of successful extensions: 44227 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43135 Number of HSP's gapped (non-prelim): 1071 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
